[INFO] fetching crate fastqrab 0.9.1...
[INFO] testing fastqrab-0.9.1 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate fastqrab 0.9.1 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate fastqrab 0.9.1
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate fastqrab 0.9.1
[INFO] tweaked toml for crates.io crate fastqrab 0.9.1 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate fastqrab 0.9.1 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fastqrab 0.9.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `lints.clippy.if-not-else` is deprecated in favor of `lints.clippy.if_not_else` and will not work in a future edition
[INFO] [stderr] warning: Cargo.toml: duplicate lint `if-not-else` in `[lints.clippy]`, conflicts with `if_not_else` and will not work in a future edition
[INFO] [stderr] warning: `fastqrab` (manifest) generated 2 warnings
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba
[INFO] running `Command { std: "docker" "start" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `lints.clippy.if-not-else` is deprecated in favor of `lints.clippy.if_not_else` and will not work in a future edition
[INFO] [stderr] warning: Cargo.toml: duplicate lint `if-not-else` in `[lints.clippy]`, conflicts with `if_not_else` and will not work in a future edition
[INFO] [stderr] warning: `fastqrab` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling serde_core v1.0.228
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[INFO] [stderr]    Compiling lexical-core v1.0.6
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[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling toml_edit v0.24.1+spec-1.1.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling ordered-float v5.2.0
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[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling schemars v1.2.1
[INFO] [stderr]    Compiling toml-pretty-deser v0.3.6
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling noodles-sam v0.83.0
[INFO] [stderr]    Compiling spin v0.9.8
[INFO] [stderr]    Compiling hamming-resonate v0.4.0
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling crypto-common v0.1.7
[INFO] [stderr]    Compiling typed_floats_macros v1.0.7
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[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]    Compiling futures-core v0.3.32
[INFO] [stderr]    Compiling futures-sink v0.3.32
[INFO] [stderr]    Compiling flume v0.11.1
[INFO] [stderr]    Compiling nix v0.31.2
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling noodles-bam v0.87.0
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling bzip2 v0.5.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling typed_floats v1.0.7
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling core_affinity v0.8.3
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.48
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling gimli v0.32.3
[INFO] [stderr]    Compiling env_home v0.1.0
[INFO] [stderr]    Compiling mutants v0.0.3
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling addr2line v0.25.1
[INFO] [stderr]    Compiling which v7.0.3
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling ex v0.1.3
[INFO] [stderr]    Compiling noodles v0.108.0
[INFO] [stderr]    Compiling gzp v2.0.2
[INFO] [stderr]    Compiling rand v0.9.4
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling serde_spanned v1.1.0
[INFO] [stderr]    Compiling rustc-demangle v0.1.27
[INFO] [stderr]    Compiling scalable_cuckoo_filter v0.5.1
[INFO] [stderr]    Compiling enum_dispatch v0.3.13
[INFO] [stderr]    Compiling toml v0.9.12+spec-1.1.0
[INFO] [stderr]    Compiling uuid v1.23.0
[INFO] [stderr]    Compiling clap v4.6.0
[INFO] [stderr]    Compiling sysinfo v0.37.2
[INFO] [stderr]    Compiling fastqrab-dna v0.9.1
[INFO] [stderr]    Compiling fastqrab-config v0.9.1
[INFO] [stderr]    Compiling backtrace v0.3.76
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling disjoint v0.8.0
[INFO] [stderr]    Compiling union-find-rs v0.2.1
[INFO] [stderr]    Compiling fasteval v0.2.4
[INFO] [stderr]    Compiling rustc-hash v2.1.2
[INFO] [stderr]    Compiling human-panic v2.0.6
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling mimalloc v0.1.51
[INFO] [stderr]    Compiling ctrlc v3.5.2
[INFO] [stderr]    Compiling clap_complete v4.6.0
[INFO] [stderr]    Compiling json_value_merge v2.0.1
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling allocation-counter v0.8.1
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling niffler v3.0.0
[INFO] [stderr]    Compiling fastqrab-io v0.9.1
[INFO] [stderr]    Compiling fastqrab-steps v0.9.1
[INFO] [stderr]    Compiling fastqrab v0.9.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 8m 05s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.31.2, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `lints.clippy.if-not-else` is deprecated in favor of `lints.clippy.if_not_else` and will not work in a future edition
[INFO] [stderr] warning: Cargo.toml: duplicate lint `if-not-else` in `[lints.clippy]`, conflicts with `if_not_else` and will not work in a future edition
[INFO] [stderr] warning: `fastqrab` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling zerocopy v0.8.47
[INFO] [stderr]    Compiling zerocopy-derive v0.8.47
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling rand v0.9.4
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling scalable_cuckoo_filter v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling fastqrab-dna v0.9.1
[INFO] [stderr]    Compiling fastqrab-config v0.9.1
[INFO] [stderr]    Compiling fastqrab-io v0.9.1
[INFO] [stderr]    Compiling fastqrab-steps v0.9.1
[INFO] [stderr]    Compiling fastqrab v0.9.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 4m 10s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.31.2, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `lints.clippy.if-not-else` is deprecated in favor of `lints.clippy.if_not_else` and will not work in a future edition
[INFO] [stderr] warning: Cargo.toml: duplicate lint `if-not-else` in `[lints.clippy]`, conflicts with `if_not_else` and will not work in a future edition
[INFO] [stderr] warning: `fastqrab` (manifest) generated 2 warnings
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.54s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.31.2, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/fastqrab/bf31be6b766e12bd/out/fastqrab-bf31be6b766e12bd)
[INFO] [stdout] 
[INFO] [stdout] running 16 tests
[INFO] [stdout] test cli::verify::test::test_calculate_size_difference_percent ... ok
[INFO] [stdout] test interactive::tests::test_inject_steps_prepends_head_and_sample_and_appends_inspect ... ok
[INFO] [stdout] test interactive::tests::test_make_paths_absolute_converts_relative_paths ... ok
[INFO] [stdout] test interactive::tests::test_interactive_config_defaults ... ok
[INFO] [stdout] test interactive::tests::test_make_paths_absolute_handles_array_paths ... ok
[INFO] [stdout] test interactive::tests::test_make_paths_absolute_leaves_absolute_paths_unchanged ... ok
[INFO] [stdout] test cli::verify::test::test_strip_backtrace ... FAILED
[INFO] [stdout] test interactive::tests::test_modify_output_sets_none_format ... ok
[INFO] [stdout] test interactive::tests::test_modify_toml_for_interactive_combines_all_modifications ... ok
[INFO] [stdout] test interactive::tests::test_modify_output_enables_report_json_when_report_step_present ... ok
[INFO] [stdout] test cli::verify::test::test_decompress_file ... ok
[INFO] [stdout] test interactive::tests::test_process_toml_interactive_fails_on_invalid_toml ... ok
[INFO] [stdout] test interactive::tests::test_interactive_config_custom_values ... ok
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stdout] test interactive::tests::test_process_toml_interactive_fails_on_invalid_utf8 ... ok
[INFO] [stdout] test interactive::tests::test_inject_steps_creates_steps_when_none_exist ... ok
[INFO] [stdout] test pipeline::tests::test_bits_needed_to_represent ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- cli::verify::test::test_strip_backtrace stdout ----
[INFO] [stdout] running 3 tests
[INFO] [stdout] test pipeline::tests::test_checked_f64_to_u16 ... ok
[INFO] [stdout] test cli::verify::test::test_calculate_size_difference_percent ... ok
[INFO] [stdout] test cli::verify::test::test_decompress_file ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- cli::verify::test::test_decompress_file stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'cli::verify::test::test_decompress_file' (1426326) panicked at fastqrab/src/cli/verify.rs:1008:9:
[INFO] [stdout] explicit panic
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     cli::verify::test::test_decompress_file
[INFO] [stdout] 
[INFO] [stdout] thread 'cli::verify::test::test_strip_backtrace' (3975) panicked at src/cli/verify.rs:1394:14:
[INFO] [stdout] Failed to write actual stderr to file: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x587ada7871e1 - <<std[617be2ca0a6fd877]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x587ada79c84a - core[a373ad73a504971]::fmt::write
[INFO] [stdout]    2:     0x587ada78b93c - <alloc[2e1b2a31b91974c5]::vec::Vec<u8> as core[a373ad73a504971]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x587ada7624c6 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x587ada77f1f9 - std[617be2ca0a6fd877]::panicking::default_hook
[INFO] [stdout]    5:     0x587ada6912f0 - test[aada8e7e76ba119b]::test_main_inner::{closure#0}
[INFO] [stdout]    6:     0x587ada77f3b2 - std[617be2ca0a6fd877]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x587ada762572 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x587ada75aab9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace::<std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x587ada76328d - __rustc[ea4f61d10b84890b]::rust_begin_unwind
[INFO] [stdout]   10:     0x587ada79cf7c - core[a373ad73a504971]::panicking::panic_fmt
[INFO] [stdout]   11:     0x587ada79cd52 - core[a373ad73a504971]::result::unwrap_failed
[INFO] [stdout]   12:     0x587ada67d6cd - <fastqrab[3227172173e3ca5]::cli::verify::test::test_strip_backtrace::{closure#0} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x587ada68473b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::<core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>>
[INFO] [stdout]   14:     0x587ada691915 - test[aada8e7e76ba119b]::run_test::{closure#0}
[INFO] [stdout]   15:     0x587ada68b204 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace::<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x587ada6949a2 - <std[617be2ca0a6fd877]::thread::lifecycle::spawn_unchecked<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x587ada7864ff - <std[617be2ca0a6fd877]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7fec5804bdfa - <unknown>
[INFO] [stdout]   19:     0x7fec580df3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     cli::verify::test::test_strip_backtrace
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 15 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba", kill_on_drop: false }`
[INFO] [stdout] a16abbbfad93e426b4cf0d8f2102483e5b2216361709ab16c080255b649a90ba
