[INFO] fetching crate librna-sys 0.3.2...
[INFO] testing librna-sys-0.3.2 against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate librna-sys 0.3.2 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate librna-sys 0.3.2
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate librna-sys 0.3.2
[INFO] tweaked toml for crates.io crate librna-sys 0.3.2 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate librna-sys 0.3.2 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate librna-sys 0.3.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unicode-ident v1.0.6
[INFO] [stderr]   Downloaded pyo3-macros v0.29.0
[INFO] [stderr]   Downloaded either v1.6.1
[INFO] [stderr]   Downloaded shlex v1.1.0
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.29.0
[INFO] [stderr]   Downloaded pkg-config v0.3.30
[INFO] [stderr]   Downloaded target-lexicon v0.13.4
[INFO] [stderr]   Downloaded libloading v0.7.3
[INFO] [stderr]   Downloaded glob v0.3.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.29.0
[INFO] [stderr]   Downloaded log v0.4.17
[INFO] [stderr]   Downloaded clang-sys v1.3.1
[INFO] [stderr]   Downloaded pyo3-build-config v0.29.0
[INFO] [stderr]   Downloaded memchr v2.5.0
[INFO] [stderr]   Downloaded nom v7.1.1
[INFO] [stderr]   Downloaded portable-atomic v1.7.0
[INFO] [stderr]   Downloaded regex v1.5.5
[INFO] [stderr]   Downloaded regex-syntax v0.6.25
[INFO] [stderr]   Downloaded pyo3 v0.29.0
[INFO] [stderr]   Downloaded libc v0.2.158
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e
[INFO] running `Command { std: "docker" "start" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling prettyplease v0.2.22
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling libloading v0.7.3
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling clang-sys v1.3.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling syn v2.0.77
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]    Compiling regex v1.5.5
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling librna-sys v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr] warning: librna-sys@0.3.2: pkg_config failed (
[INFO] [stderr] warning: librna-sys@0.3.2: Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead.
[INFO] [stderr] warning: librna-sys@0.3.2: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include
[INFO] [stderr] warning: librna-sys@0.3.2: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib
[INFO] [stderr] warning: librna-sys@0.3.2: libRNA.a not found!
[INFO] [stderr] warning: librna-sys@0.3.2: Fallback mode for local builds is not yet implemented.
[INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.2 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_RELEASE_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/release/build/librna-sys-8ff5e4e05f471ef9/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=src/wrapper.h
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBRNA_LIB_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=RNALIB2_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:warning=pkg_config failed (
[INFO] [stderr]   pkg-config exited with status code 1
[INFO] [stderr]   > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --static --libs --cflags RNAlib2 RNAlib2 >= 2.5.0
[INFO] [stderr] 
[INFO] [stderr]   The system library `RNAlib2` required by crate `librna-sys` was not found.
[INFO] [stderr]   The file `RNAlib2.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory.
[INFO] [stderr]   The PKG_CONFIG_PATH environment variable is not set.
[INFO] [stderr] 
[INFO] [stderr]   HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `RNAlib2.pc`.
[INFO] [stderr]   ).
[INFO] [stderr]   cargo:warning=Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead.
[INFO] [stderr]   cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include
[INFO] [stderr]   cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib
[INFO] [stderr]   cargo:warning=libRNA.a not found!
[INFO] [stderr]   cargo:warning=Fallback mode for local builds is not yet implemented.
[INFO] [stderr]   cargo:rustc-link-lib=static=RNA
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   cargo:rustc-link-lib=gsl
[INFO] [stderr]   cargo:rustc-link-lib=mpfr
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=gmp
[INFO] [stderr]   cargo:include=/usr/include
[INFO] [stderr]   cargo:include=/usr/include/ViennaRNA
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (511) panicked at src/build.rs:97:10:
[INFO] [stderr]   Unable to generate bindings: ClangDiagnostic("src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found\n")
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x571e3c3b3f61 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stderr]      1:     0x571e3c3ca21a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stderr]      2:     0x571e3c3b90bc - <std[70759c8f55707aa4]::sys::stdio::unix::Stderr as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stderr]      3:     0x571e3c392416 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stderr]      4:     0x571e3c3ae771 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stderr]      5:     0x571e3c3aea9b - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stderr]      6:     0x571e3c3924c2 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stderr]      7:     0x571e3c38b059 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stderr]      8:     0x571e3c392cdd - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stderr]      9:     0x571e3c3caa3c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stderr]     10:     0x571e3c3ca812 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stderr]     11:     0x571e3bef602b - <core[df12db4294e9bfd3]::result::Result<bindgen[1928cf6beae41ba2]::Bindings, bindgen[1928cf6beae41ba2]::BindgenError>>::expect
[INFO] [stderr]     12:     0x571e3bef5c3b - build_script_build[b94f741ee1e9b859]::main
[INFO] [stderr]     13:     0x571e3bef8673 - <fn() as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]     14:     0x571e3bef3cf6 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<fn(), ()>
[INFO] [stderr]     15:     0x571e3bef43e9 - std[70759c8f55707aa4]::rt::lang_start::<()>::{closure#0}
[INFO] [stderr]     16:     0x571e3c3ada99 - std[70759c8f55707aa4]::rt::lang_start_internal
[INFO] [stderr]     17:     0x571e3bef39b1 - std[70759c8f55707aa4]::rt::lang_start::<()>
[INFO] [stderr]     18:     0x571e3bef8a55 - main
[INFO] [stderr]     19:     0x708c32af5601 - <unknown>
[INFO] [stderr]     20:     0x708c32af5718 - __libc_start_main
[INFO] [stderr]     21:     0x571e3bef2575 - _start
[INFO] [stderr]     22:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e", kill_on_drop: false }`
[INFO] [stdout] 5a414eca8d9e2a77ab589133cfa0fb4307b63188ea86fac2420a6ab85be5106e
