[INFO] cloning repository https://github.com/genhub-bio/gen
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/genhub-bio/gen" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 55f8a9dd2c0f89115e504ed00ffe970774b20b98
[INFO] testing genhub-bio/gen against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-0-tc1/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-0-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/genhub-bio/gen
[INFO] finished tweaking git repo https://github.com/genhub-bio/gen
[INFO] tweaked toml for git repo https://github.com/genhub-bio/gen written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/genhub-bio/gen on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/genhub-bio/gen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d
[INFO] running `Command { std: "docker" "start" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
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[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling unicode-segmentation v1.13.3
[INFO] [stderr]    Compiling aws-lc-rs v1.18.1
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling crossbeam-channel v0.5.17
[INFO] [stderr]    Compiling rustls-pki-types v1.15.1
[INFO] [stderr]    Compiling bstr v1.13.1
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling flate2 v1.1.10
[INFO] [stderr]    Compiling noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling const-random-macro v0.1.16
[INFO] [stderr]    Compiling noodles-core v0.18.0
[INFO] [stderr]    Compiling castaway v0.2.4
[INFO] [stderr]    Compiling strum_macros v0.28.0
[INFO] [stderr]    Compiling hashbrown v0.16.1
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling untrusted v0.9.0
[INFO] [stderr]    Compiling compact_str v0.9.1
[INFO] [stderr]    Compiling darling_macro v0.24.1
[INFO] [stderr]    Compiling darling v0.24.1
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling kasuari v0.4.12
[INFO] [stderr]    Compiling const-random v0.1.18
[INFO] [stderr]    Compiling unicode-truncate v2.0.1
[INFO] [stderr]    Compiling http-body v1.1.0
[INFO] [stderr]    Compiling lru v0.18.5
[INFO] [stderr]    Compiling httparse v1.10.1
[INFO] [stderr]    Compiling critical-section v1.2.0
[INFO] [stderr]    Compiling rustls v0.23.46
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling dlv-list v0.5.2
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling noodles-csi v0.51.0
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling try-lock v0.2.5
[INFO] [stderr]    Compiling tower-service v0.3.3
[INFO] [stderr]    Compiling want v0.3.2
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling ordered-multimap v0.7.3
[INFO] [stderr]    Compiling strum v0.28.0
[INFO] [stderr]    Compiling ratatui-core v0.1.2
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling tracing-core v0.1.36
[INFO] [stderr]    Compiling errno v0.3.14
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling signal-hook v0.3.18
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]    Compiling atomic-waker v1.1.2
[INFO] [stderr]    Compiling instability v0.3.14
[INFO] [stderr]    Compiling hyper v1.12.0
[INFO] [stderr]    Compiling convert_case v0.10.0
[INFO] [stderr]    Compiling libdoltlite-sys v0.38.21
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling signal-hook-registry v1.4.8
[INFO] [stderr]    Compiling rust-ini v0.21.3
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling quick-xml v0.42.0
[INFO] [stderr]    Compiling sync_wrapper v1.0.2
[INFO] [stderr]    Compiling tower-layer v0.3.3
[INFO] [stderr]    Compiling scopeguard v1.2.0
[INFO] [stderr]    Compiling capnp v0.24.1
[INFO] [stderr]    Compiling ipnet v2.12.2
[INFO] [stderr]    Compiling hyper-util v0.1.21
[INFO] [stderr]    Compiling lock_api v0.4.14
[INFO] [stderr]    Compiling tower v0.5.3
[INFO] [stderr]    Compiling reqsign-aws-core v3.2.0
[INFO] [stderr]    Compiling capnpc v0.24.1
[INFO] [stderr]    Compiling derive_more-impl v2.1.1
[INFO] [stderr]    Compiling noodles-tabix v0.57.0
[INFO] [stderr]    Compiling webpki-roots v1.0.9
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling num_threads v0.1.7
[INFO] [stderr]    Compiling num-conv v0.2.2
[INFO] [stderr]    Compiling openssl-probe v0.2.1
[INFO] [stderr]    Compiling litrs v1.0.0
[INFO] [stderr]    Compiling time-core v0.1.9
[INFO] [stderr]    Compiling deranged v0.5.8
[INFO] [stderr]    Compiling powerfmt v0.2.1
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling gen-capnp-schemas v0.4.0 (/opt/rustwide/workdir/gen-capnp-schemas)
[INFO] [stderr]    Compiling document-features v0.2.12
[INFO] [stderr]    Compiling rustls-native-certs v0.8.4
[INFO] [stderr]    Compiling reqsign-aws-v4 v3.3.1
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling derive_more v2.1.1
[INFO] [stderr]    Compiling parking_lot v0.12.5
[INFO] [stderr]    Compiling time v0.3.55
[INFO] [stderr]    Compiling tower-http v0.6.11
[INFO] [stderr]    Compiling signal-hook-mio v0.2.5
[INFO] [stderr]    Compiling noodles-gff v0.52.0
[INFO] [stderr]    Compiling http-body-util v0.1.5
[INFO] [stderr]    Compiling reqsign-file-read-tokio v3.0.7
[INFO] [stderr]    Compiling chacha20 v0.10.2
[INFO] [stderr]    Compiling hashlink v0.12.2
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling fallible-iterator v0.3.0
[INFO] [stderr]    Compiling fastrand v2.5.0
[INFO] [stderr]    Compiling fallible-streaming-iterator v0.1.9
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling noodles-gtf v0.47.0
[INFO] [stderr]    Compiling rand v0.10.3
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling crossterm v0.29.0
[INFO] [stderr]    Compiling noodles-vcf v0.81.0
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]    Compiling noodles-bed v0.28.0
[INFO] [stderr]    Compiling noodles-fasta v0.56.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling pem v4.0.0
[INFO] [stderr]    Compiling line-clipping v0.3.8
[INFO] [stderr]    Compiling aho-corasick v1.1.5
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling spin v0.10.1
[INFO] [stderr]    Compiling pure-rust-locales v0.8.2
[INFO] [stderr]    Compiling crc-fast v1.10.0
[INFO] [stderr] error: could not compile `regex-syntax` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.99.0-beta.8-x86_64-unknown-linux-gnu/bin/rustc --crate-name regex_syntax --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/regex-syntax-0.8.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=s -C panic=abort -C linker-plugin-lto -C codegen-units=1 --cfg 'feature="default"' --cfg 'feature="std"' --cfg 'feature="unicode"' --cfg 'feature="unicode-age"' --cfg 'feature="unicode-bool"' --cfg 'feature="unicode-case"' --cfg 'feature="unicode-gencat"' --cfg 'feature="unicode-perl"' --cfg 'feature="unicode-script"' --cfg 'feature="unicode-segment"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "default", "std", "unicode", "unicode-age", "unicode-bool", "unicode-case", "unicode-gencat", "unicode-perl", "unicode-script", "unicode-segment"))' -C metadata=4244ca960bbbbdee -C extra-filename=-746a6bd7db30875a --out-dir /opt/rustwide/target/release/deps -C strip=symbols -L dependency=/opt/rustwide/target/release/deps --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] warning: libdoltlite-sys@0.38.21: cc: fatal error: Killed signal terminated program cc1
[INFO] [stderr] warning: libdoltlite-sys@0.38.21: compilation terminated.
[INFO] [stderr] error: failed to run custom build command for `libdoltlite-sys v0.38.21`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_RELEASE_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/release/build/libdoltlite-sys-65716e05f45491b7/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBSQLITE3_SYS_USE_PKG_CONFIG
[INFO] [stderr]   cargo:include=/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/libdoltlite-sys-0.38.21/doltlite
[INFO] [stderr]   cargo:rerun-if-changed=doltlite/doltlite.c
[INFO] [stderr]   cargo:rerun-if-changed=patches
[INFO] [stderr]   cargo:rerun-if-changed=doltlite/remote
[INFO] [stderr]   cargo:rerun-if-env-changed=SQLITE_MAX_VARIABLE_NUMBER
[INFO] [stderr]   cargo:rerun-if-env-changed=SQLITE_MAX_EXPR_DEPTH
[INFO] [stderr]   cargo:rerun-if-env-changed=SQLITE_MAX_COLUMN
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBSQLITE3_FLAGS
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_FORCE_DISABLE
[INFO] [stderr]   CC_FORCE_DISABLE = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_x86_64-unknown-linux-gnu
[INFO] [stderr]   CC_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_x86_64_unknown_linux_gnu
[INFO] [stderr]   CC_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_CC
[INFO] [stderr]   HOST_CC = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC
[INFO] [stderr]   CC = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT
[INFO] [stderr]   cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS
[INFO] [stderr]   CFLAGS = None
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_CFLAGS
[INFO] [stderr]   HOST_CFLAGS = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS_x86_64_unknown_linux_gnu
[INFO] [stderr]   CFLAGS_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS_x86_64-unknown-linux-gnu
[INFO] [stderr]   CFLAGS_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   cargo:warning=cc: fatal error: Killed signal terminated program cc1
[INFO] [stderr]   cargo:warning=compilation terminated.
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   error occurred in cc-rs: command did not execute successfully (status code exit status: 1): "cc" "-Os" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-I" "doltlite/remote" "-I" "doltlite/remote/ed25519" "-I" "doltlite/remote/mbedtls/include" "-I" "doltlite/remote/mbedtls/library" "-w" "-DSQLITE_CORE" "-DSQLITE_DEFAULT_FOREIGN_KEYS=1" "-DSQLITE_ENABLE_API_ARMOR" "-DSQLITE_ENABLE_COLUMN_METADATA" "-DSQLITE_ENABLE_DBSTAT_VTAB" "-DSQLITE_ENABLE_FTS3" "-DSQLITE_ENABLE_FTS3_PARENTHESIS" "-DSQLITE_ENABLE_FTS5" "-DSQLITE_ENABLE_JSON1" "-DSQLITE_ENABLE_LOAD_EXTENSION=1" "-DSQLITE_ENABLE_MEMORY_MANAGEMENT" "-DSQLITE_ENABLE_RTREE" "-DSQLITE_ENABLE_STAT4" "-DSQLITE_SOUNDEX" "-DSQLITE_THREADSAFE=1" "-DSQLITE_USE_URI" "-DHAVE_USLEEP=1" "-DHAVE_ISNAN" "-D_POSIX_THREAD_SAFE_FUNCTIONS" "-DHAVE_LOCALTIME_R" "-DDOLTLITE_HAVE_AUTH" "-o" "/opt/rustwide/target/release/build/libdoltlite-sys-82e2615fa1459599/out/cb79ad1668726dd2-doltlite.o" "-c" "/opt/rustwide/target/release/build/libdoltlite-sys-82e2615fa1459599/out/patched-doltlite/doltlite.c"
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] running `Command { std: "docker" "inspect" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d", kill_on_drop: false }`
[INFO] [stdout] 4a594abf3449c5c9083d3fecc10de7bfea0c532927be0221f13ce7655cbd931d
