[INFO] fetching crate lrge 1.0.0... [INFO] testing lrge-1.0.0 against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2 [INFO] extracting crate lrge 1.0.0 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate lrge 1.0.0 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate lrge 1.0.0 [INFO] tweaked toml for crates.io crate lrge 1.0.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate lrge 1.0.0 on toolchain 1.99.0-beta.8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate lrge 1.0.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded seq-hash v0.2.0 [INFO] [stderr] Downloaded packed-seq v5.0.0 [INFO] [stderr] Downloaded simd-minimizers v3.0.0 [INFO] [stderr] Downloaded ensure_simd v0.1.0 [INFO] [stderr] Downloaded noodles-core v0.19.0 [INFO] [stderr] Downloaded mem_dbg-derive v0.3.4 [INFO] [stderr] Downloaded noodles-util v0.78.0 [INFO] [stderr] Downloaded noodles-fasta v0.60.0 [INFO] [stderr] Downloaded noodles v0.109.0 [INFO] [stderr] Downloaded assert_cmd v2.2.1 [INFO] [stderr] Downloaded noodles-csi v0.55.0 [INFO] [stderr] Downloaded noodles-bgzf v0.46.0 [INFO] [stderr] Downloaded libbz2-rs-sys v0.2.3 [INFO] [stderr] Downloaded buffer-redux v1.1.0 [INFO] [stderr] Downloaded liblrge v1.0.0 [INFO] [stderr] Downloaded noodles-bam v0.88.0 [INFO] [stderr] Downloaded jiff-static v0.2.24 [INFO] [stderr] Downloaded noodles-sam v0.84.0 [INFO] [stderr] Downloaded mem_dbg v0.4.4 [INFO] [stderr] Downloaded wide v1.7.0 [INFO] [stderr] Downloaded noodles-cram v0.92.0 [INFO] [stderr] Downloaded lzma-rust2 v0.16.2 [INFO] [stderr] Downloaded minimap2-sys v0.1.30+minimap2.2.30 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] [stderr] Downloaded jiff v0.2.24 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74 [INFO] running `Command { std: "docker" "start" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling bit-vec v0.9.1 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling chacha20 v0.10.2 [INFO] [stderr] Compiling mem_dbg-derive v0.3.4 [INFO] [stderr] Compiling libz-sys v1.1.28 [INFO] [stderr] Compiling libbz2-rs-sys v0.2.3 [INFO] [stderr] Compiling liblzma-sys v0.4.6 [INFO] [stderr] Compiling sha2 v0.10.9 [INFO] [stderr] Compiling wide v1.7.0 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling ensure_simd v0.1.0 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling minimap2-sys v0.1.30+minimap2.2.30 [INFO] [stderr] Compiling rand v0.10.2 [INFO] [stderr] Compiling itertools v0.15.0 [INFO] [stderr] Compiling lzma-rust2 v0.16.2 [INFO] [stderr] Compiling noodles-core v0.19.0 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling bzip2 v0.6.1 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling noodles-bgzf v0.46.0 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling mem_dbg v0.4.4 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling buffer-redux v1.1.0 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling noodles-csi v0.55.0 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling noodles-fasta v0.60.0 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling csv v1.4.0 [INFO] [stderr] Compiling needletail v0.6.3 [INFO] [stderr] Compiling rand v0.9.4 [INFO] [stderr] Compiling clap v4.6.1 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling rayon v1.12.0 [INFO] [stderr] Compiling liblzma v0.4.6 [INFO] [stderr] Compiling noodles-sam v0.84.0 [INFO] [stderr] Compiling jiff v0.2.24 [INFO] [stderr] Compiling tempfile v3.27.0 [INFO] [stderr] Compiling noodles-bam v0.88.0 [INFO] [stderr] Compiling noodles-cram v0.92.0 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling env_filter v1.0.1 [INFO] [stderr] Compiling env_logger v0.11.10 [INFO] [stderr] Compiling noodles v0.109.0 [INFO] [stderr] Compiling noodles-util v0.78.0 [INFO] [stderr] Compiling packed-seq v5.0.0 [INFO] [stderr] Compiling seq-hash v0.2.0 [INFO] [stderr] Compiling simd-minimizers v3.0.0 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling liblrge v1.0.0 [INFO] [stderr] Compiling lrge v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `release` profile [optimized] target(s) in 1m 20s [INFO] running `Command { std: "docker" "inspect" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling predicates-core v1.0.10 [INFO] [stderr] Compiling float-cmp v0.10.0 [INFO] [stderr] Compiling assert_cmd v2.2.1 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling predicates-tree v1.0.13 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling noodles-core v0.19.0 [INFO] [stderr] Compiling noodles-csi v0.55.0 [INFO] [stderr] Compiling noodles-fasta v0.60.0 [INFO] [stderr] Compiling env_filter v1.0.1 [INFO] [stderr] Compiling predicates v3.1.4 [INFO] [stderr] Compiling env_logger v0.11.10 [INFO] [stderr] Compiling noodles-sam v0.84.0 [INFO] [stderr] Compiling noodles-bam v0.88.0 [INFO] [stderr] Compiling noodles-cram v0.92.0 [INFO] [stderr] Compiling noodles-util v0.78.0 [INFO] [stderr] Compiling noodles v0.109.0 [INFO] [stderr] Compiling liblrge v1.0.0 [INFO] [stderr] Compiling lrge v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `release` profile [optimized] target(s) in 52.63s [INFO] running `Command { std: "docker" "inspect" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] Finished `release` profile [optimized] target(s) in 0.15s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/release/deps/lrge-2e58bc3a9d5cc78f) [INFO] [stdout] [INFO] [stdout] running 57 tests [INFO] [stdout] test cli::tests::a_bare_share_where_the_input_should_be_points_at_the_equals_form ... ok [INFO] [stdout] test cli::tests::an_ordinary_missing_path_gets_no_share_advice ... ok [INFO] [stdout] test cli::tests::byte_size_rejects_a_value_that_overflows_its_suffix ... ok [INFO] [stdout] test cli::tests::byte_size_allows_a_space_before_the_suffix ... ok [INFO] [stdout] test cli::tests::byte_size_truncates_a_fraction_of_a_byte ... ok [INFO] [stdout] test cli::tests::byte_size_accepts_fractional_sizes ... ok [INFO] [stdout] test cli::tests::cli_defaults_the_read_buffer_cap ... ok [INFO] [stdout] test cli::tests::byte_size_accepts_binary_suffixes ... ok [INFO] [stdout] test cli::tests::check_path_exists_it_doesnt ... ok [INFO] [stdout] test cli::tests::cli_max_overhang_ratio_with_filter_contained_is_accepted ... ok [INFO] [stdout] test cli::tests::cli_defaults_to_scaling_the_shortfall ... ok [INFO] [stdout] test cli::tests::cli_bare_filter_contained_uses_the_fitted_share ... ok [INFO] [stdout] test cli::tests::cli_filter_contained_takes_a_share_after_an_equals_sign ... ok [INFO] [stdout] test cli::tests::cli_accepts_normalization_modes ... ok [INFO] [stdout] test cli::tests::byte_size_rejects_nonsense ... ok [INFO] [stdout] test cli::tests::byte_size_accepts_plain_bytes ... ok [INFO] [stdout] test cli::tests::cli_default_internal_match_threshold_matches_the_library_default ... ok [INFO] [stdout] test cli::tests::cli_quantiles_given_on_the_command_line_beat_the_platform_default ... ok [INFO] [stdout] test cli::tests::cli_quantile_defaults_follow_the_platform ... ok [INFO] [stdout] test cli::tests::cli_quantile_defaults_match_the_library ... ok [INFO] [stdout] test cli::tests::cli_max_overhang_ratio_default_does_not_require_filter_contained ... ok [INFO] [stdout] test cli::tests::cli_rejects_invalid_normalization_mode ... ok [INFO] [stdout] test cli::tests::check_path_it_does ... ok [INFO] [stdout] test cli::tests::cli_with_num_reads ... ok [INFO] [stdout] test cli::tests::cli_rejects_a_share_outside_zero_to_one ... ok [INFO] [stdout] test cli::tests::cli_with_num_reads_and_query_reads ... ok [INFO] [stdout] test cli::tests::cli_with_num_reads_and_target_reads ... ok [INFO] [stdout] test cli::tests::cli_with_num_reads_and_target_reads_and_query_reads ... ok [INFO] [stdout] test cli::tests::cli_max_overhang_ratio_without_filter_contained_is_an_error ... ok [INFO] [stdout] test cli::tests::cli_accepts_shortfall_modes ... ok [INFO] [stdout] test cli::tests::cli_no_args ... ok [INFO] [stdout] test cli::tests::cli_accepts_a_read_buffer_cap ... ok [INFO] [stdout] test utils::tests::test_bp_range ... ok [INFO] [stdout] test cli::tests::test_validate_quantile ... ok [INFO] [stdout] test cli::tests::cli_filter_contained_does_not_consume_the_input_path ... ok [INFO] [stdout] test utils::tests::test_create_temp_dir_with_keep ... ok [INFO] [stdout] test cli::tests::cli_default_overhang_ratio_matches_the_library_default ... ok [INFO] [stdout] test cli::tests::cli_rejects_invalid_shortfall_mode ... ok [INFO] [stdout] test utils::tests::test_kbp_range ... ok [INFO] [stdout] test cli::tests::cli_with_query_reads_no_target_reads ... ok [INFO] [stdout] test utils::tests::test_create_temp_dir_with_none ... ok [INFO] [stdout] test utils::tests::test_create_temp_dir_with_some ... ok [INFO] [stdout] test cli::tests::cli_with_quiet ... ok [INFO] [stdout] test cli::tests::cli_with_quiet_verbose ... ok [INFO] [stdout] test utils::tests::test_create_temp_dur_with_some_that_does_not_exist ... ok [INFO] [stdout] test utils::tests::test_gbp_range ... ok [INFO] [stdout] test cli::tests::cli_with_target_and_query_reads ... ok [INFO] [stdout] test utils::tests::test_pbp_range ... ok [INFO] [stdout] test utils::tests::test_infinity ... ok [INFO] [stdout] test utils::tests::test_small_values ... ok [INFO] [stdout] test cli::tests::cli_with_target_reads_no_query_reads ... ok [INFO] [stdout] test cli::tests::cli_with_verbose ... ok [INFO] [stdout] test cli::tests::cli_with_verbose_verbose_verbose ... ok [INFO] [stdout] test cli::tests::cli_with_input ... ok [INFO] [stdout] test utils::tests::test_tbp_range ... ok [INFO] [stdout] test utils::tests::test_mbp_range ... ok [INFO] [stdout] test cli::tests::cli_with_verbose_verbose ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 57 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running tests/alignment.rs (/opt/rustwide/target/release/deps/alignment-29f0678ddcc3309f) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test test_mapped_sam_fails ... ok [INFO] [stdout] test test_sam_input ... ok [INFO] [stdout] test test_toy_bam_input ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.29s [INFO] [stdout] [INFO] [stderr] Running tests/depth_normalization.rs (/opt/rustwide/target/release/deps/depth_normalization-9b1388cb92dab3d4) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test a_generous_budget_keeps_the_buffered_path ... ok [INFO] [stdout] test an_even_depth_input_is_not_normalized_at_a_median_depth_of_one ... ok [INFO] [stdout] test a_small_normalized_pool_warns_and_still_estimates ... ok [INFO] [stdout] test the_low_memory_path_reproduces_the_buffered_estimate ... ok [INFO] [stdout] test normalization_corrects_a_high_copy_element_at_a_median_depth_of_one ... ok [INFO] [stdout] test the_estimate_does_not_depend_on_the_thread_count ... ok [INFO] [stdout] test two_set_normalization_corrects_a_high_copy_element ... ok [INFO] [stdout] test all_vs_all_normalization_corrects_a_high_copy_element ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 5.38s [INFO] [stdout] [INFO] [stderr] Running tests/internal_match_filter.rs (/opt/rustwide/target/release/deps/internal_match_filter-61e34de988515fb4) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test an_input_without_repeats_is_left_alone ... ok [INFO] [stdout] test a_filtering_run_prints_both_estimates_for_a_read_with_internal_matches ... ok [INFO] [stdout] test the_per_read_estimates_a_run_prints_are_the_ones_it_takes_its_answer_from ... ok [INFO] [stdout] test the_inverse_mapping_path_reaches_the_same_verdict ... ok [INFO] [stdout] test the_share_the_caller_gives_is_the_one_that_decides ... ok [INFO] [stdout] test a_bare_filter_flag_uses_the_fitted_share ... ok [INFO] [stdout] test an_input_whose_overlaps_are_repeats_filters_them_without_being_told_to ... ok [INFO] [stdout] test all_vs_all_reaches_the_same_verdict ... ok [INFO] [stderr] Running tests/platform.rs (/opt/rustwide/target/release/deps/platform-3fa4b5f9294f8b23) [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 59.32s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test the_all_vs_all_strategy_takes_the_platform_too ... ok [INFO] [stdout] test nanopore_is_the_platform_a_run_that_says_nothing_gets ... ok [INFO] [stderr] Running tests/read_allocation.rs (/opt/rustwide/target/release/deps/read_allocation-56d3a04e2d2b7667) [INFO] [stdout] test the_platform_picks_the_overlap_preset ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.53s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test an_input_below_the_query_request_still_estimates ... ok [INFO] [stdout] test an_input_too_small_for_both_sets_keeps_the_requested_ratio ... ok [INFO] [stdout] test the_target_mode_keeps_the_full_query_request ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.23s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74", kill_on_drop: false }` [INFO] [stdout] 3b70b8c31de18dfb9e89dc367f2bbbf0d24e89cf7090c0405121673af9a71d74