[INFO] cloning repository https://github.com/stela2502/sc_primer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/sc_primer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsc_primer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsc_primer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1090eb0228a11288f6757b925623eb00f1b3354b
[INFO] testing stela2502/sc_primer against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsc_primer" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/sc_primer
[INFO] finished tweaking git repo https://github.com/stela2502/sc_primer
[INFO] tweaked toml for git repo https://github.com/stela2502/sc_primer written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/sc_primer on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/sc_primer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded stela-int-to-str v0.2.3
[INFO] [stderr]   Downloaded mapping_info v0.1.0
[INFO] [stderr]   Downloaded onehot_dna v0.1.0
[INFO] [stderr]   Downloaded js-sys v0.3.100
[INFO] [stderr]   Downloaded read-tag-table v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e
[INFO] running `Command { std: "docker" "start" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling console v0.16.3
[INFO] [stderr]    Compiling unit-prefix v0.5.2
[INFO] [stderr]    Compiling arrayvec v0.7.6
[INFO] [stderr]    Compiling memchr v2.8.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling onehot_dna v0.1.0
[INFO] [stderr]    Compiling stela-int-to-str v0.2.3
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling num-format v0.4.4
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling indicatif v0.18.4
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling mapping_info v0.1.0
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling read-tag-table v0.1.0
[INFO] [stderr]    Compiling sc_primer v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: static `TENX_3M_FEBRUARY_2018_TRU` is never used
[INFO] [stdout]   --> src/single_cell_systems/tenx.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 | static TENX_3M_FEBRUARY_2018_TRU: &[u8] =
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 24.22s
[INFO] running `Command { std: "docker" "inspect" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling diff v0.1.13
[INFO] [stdout] warning: static `TENX_3M_FEBRUARY_2018_TRU` is never used
[INFO] [stdout]   --> src/single_cell_systems/tenx.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 | static TENX_3M_FEBRUARY_2018_TRU: &[u8] =
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling pretty_assertions v1.4.1
[INFO] [stderr]    Compiling sc_primer v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `single_cell_systems::CellIdGenerator`
[INFO] [stdout]  --> tests/test_all.rs:4:100
[INFO] [stdout]   |
[INFO] [stdout] 4 | ... Chemistry, PrimerDetector, RhapsodyWhitelist, single_cell_systems::CellIdGenerator};
[INFO] [stdout]   |                                                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `TENX_3M_FEBRUARY_2018_TRU` is never used
[INFO] [stdout]   --> src/single_cell_systems/tenx.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 | static TENX_3M_FEBRUARY_2018_TRU: &[u8] =
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 5.51s
[INFO] running `Command { std: "docker" "inspect" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: static `TENX_3M_FEBRUARY_2018_TRU` is never used
[INFO] [stderr]   --> src/single_cell_systems/tenx.rs:15:8
[INFO] [stderr]    |
[INFO] [stderr] 15 | static TENX_3M_FEBRUARY_2018_TRU: &[u8] =
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `sc_primer` (lib) generated 1 warning
[INFO] [stderr] warning: `sc_primer` (lib test) generated 1 warning (1 duplicate)
[INFO] [stderr] warning: unused import: `single_cell_systems::CellIdGenerator`
[INFO] [stderr]  --> tests/test_all.rs:4:100
[INFO] [stderr]   |
[INFO] [stderr] 4 | ... Chemistry, PrimerDetector, RhapsodyWhitelist, single_cell_systems::CellIdGenerator};
[INFO] [stderr]   |                                                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `sc_primer` (test "test_all") generated 1 warning (run `cargo fix --test "test_all" -p sc_primer` to apply 1 suggestion)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.08s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/sc_primer-6e4c2957e8ee26b8)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test single_cell_systems::tenx::tests::tenx_from_text_detects_exact_cell ... ok
[INFO] [stdout] test single_cell_systems::rhapsody::tests::bd_v2_384_detects_real_r1_against_builtin_whitelist ... ok
[INFO] [stdout] test single_cell_systems::tenx::tests::tenx_cell_generator_is_zero_based ... ok
[INFO] [stdout] test single_cell_systems::rhapsody::tests::bd_v2_384_fails_without_required_shift ... ok
[INFO] [stdout] test single_cell_systems::whitelists::bd_const_blocks::test_vec_length ... ok
[INFO] [stdout] test single_cell_systems::rhapsody::tests::bd_v2_384_false_positive_stress_test_detect_all ... ok
[INFO] [stdout] test single_cell_systems::rhapsody::tests::bd_v2_384_detects_real_r1_like_read_at_shift_1 ... ok
[INFO] [stdout] test single_cell_systems::tenx::tests::tenx_cell_id_is_one_based ... ok
[INFO] [stderr]      Running unittests src/bin/identify_primers.rs (/opt/rustwide/target/release/deps/identify_primers-3067e5f69bb34d98)
[INFO] [stdout] test single_cell_systems::rhapsody::tests::bd_v2_384_detect_all_multimer_with_mutations ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_all.rs (/opt/rustwide/target/release/deps/test_all-e65aba687e820923)
[INFO] [stdout] 
[INFO] [stdout] running 17 tests
[INFO] [stdout] test benchmark_detect_all_bd_v2_384_multimer ... ignored, benchmark
[INFO] [stdout] test benchmark_detect_all_bd_v2_384_multimer_fuzzy ... ignored, benchmark
[INFO] [stdout] test benchmark_detect_all_tenx_multimer ... ignored, benchmark
[INFO] [stdout] test benchmark_detect_all_tenx_multimer_fuzzy ... ignored, benchmark
[INFO] [stdout] test test_bd_cell_version_parser ... ok
[INFO] [stdout] test test_detect_all_three_tenx_monomers_with_damaged_junctions ... ok
[INFO] [stdout] test test_tenx_roundtrip_synthesize_detect_polyt_insert ... ok
[INFO] [stdout] test bd_v2_384_index_c1_accepts_one_base_fuzzy_rescue ... ok
[INFO] [stdout] test test_bd_v2_384_invalid_cell_is_translated_to_valid_cell ... ok
[INFO] [stdout] test test_bd_v2_384_roundtrip_synthesize_detect ... ok
[INFO] [stdout] test test_parse_complicated_custom_grammar ... ok
[INFO] [stdout] test test_custom_10x_adapter_rejects_too_many_fixed_errors ... ok
[INFO] [stdout] test test_reverse_complement_detection_for_tenx_like_read ... ok
[INFO] [stdout] test test_detect_all_tenx_ont_read_with_ten_primer_insert_monomers ... ok
[INFO] [stdout] test test_quality_is_sliced_with_cell_and_umi ... ok
[INFO] [stdout] test test_sequence_quality_length_mismatch_is_error ... ok
[INFO] [stdout] test test_custom_10x_adapter_allows_one_fixed_error_after_synthesis ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 13 passed; 0 failed; 4 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests sc_primer
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e", kill_on_drop: false }`
[INFO] [stdout] 3eda6bc24d659b8ace7f5662dc23c60729fc8e949c0fca39a8da6a2cb3cffa3e