[INFO] fetching crate raxtax 1.6.0... [INFO] testing raxtax-1.6.0 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2 [INFO] extracting crate raxtax 1.6.0 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate raxtax 1.6.0 [INFO] finished tweaking crates.io crate raxtax 1.6.0 [INFO] tweaked toml for crates.io crate raxtax 1.6.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate raxtax 1.6.0 on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate raxtax 1.6.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91 [INFO] running `Command { std: "docker" "start" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.2.0 [INFO] [stderr] Compiling proc-macro2 v1.0.79 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling paste v1.0.14 [INFO] [stderr] Compiling anstyle v1.0.6 [INFO] [stderr] Compiling bytemuck v1.15.0 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling serde v1.0.203 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling backtrace v0.3.69 [INFO] [stderr] Compiling miniz_oxide v0.7.2 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling gimli v0.28.1 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Compiling iana-time-zone v0.1.64 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling anstream v0.6.13 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling rustc-demangle v0.1.23 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling wide v0.7.16 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling getrandom v0.2.12 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling chrono v0.4.42 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling object v0.32.2 [INFO] [stderr] Compiling anyhow v1.0.81 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Compiling rayon v1.9.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling raxtax v1.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling crossbeam-queue v0.3.12 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling zerocopy v0.7.32 [INFO] [stderr] Compiling addr2line v0.21.0 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling core_affinity v0.8.1 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling logging_timer_proc_macros v1.1.1 [INFO] [stderr] Compiling logging_timer v1.1.1 [INFO] [stderr] Compiling serde_derive v1.0.203 [INFO] [stderr] Compiling clap_derive v4.5.0 [INFO] [stderr] Compiling indicatif v0.17.8 [INFO] [stderr] Compiling regex v1.10.4 [INFO] [stderr] Compiling env_filter v0.1.0 [INFO] [stderr] Compiling env_logger v0.11.3 [INFO] [stderr] Compiling clap v4.5.2 [INFO] [stderr] Compiling clap-verbosity-flag v2.2.0 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/lineage.rs:96:27 [INFO] [stdout] | [INFO] [stdout] 96 | .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 96 - .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stdout] 96 + .map(|&v| v - 1.0 / self.tree.num_tips as f64), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `release` profile [optimized] target(s) in 1m 19s [INFO] running `Command { std: "docker" "inspect" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/lineage.rs:96:27 [INFO] [stdout] | [INFO] [stdout] 96 | .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 96 - .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stdout] 96 + .map(|&v| v - 1.0 / self.tree.num_tips as f64), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling raxtax v1.6.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/lineage.rs:96:27 [INFO] [stdout] | [INFO] [stdout] 96 | .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 96 - .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stdout] 96 + .map(|&v| v - 1.0 / self.tree.num_tips as f64), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `release` profile [optimized] target(s) in 5.19s [INFO] running `Command { std: "docker" "inspect" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary parentheses around closure body [INFO] [stderr] --> src/lineage.rs:96:27 [INFO] [stderr] | [INFO] [stderr] 96 | .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 96 - .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stderr] 96 + .map(|&v| v - 1.0 / self.tree.num_tips as f64), [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `raxtax` (lib) generated 1 warning (run `cargo fix --lib -p raxtax` to apply 1 suggestion) [INFO] [stderr] warning: `raxtax` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `release` profile [optimized] target(s) in 0.14s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/release/build/raxtax/5ba55996106ce201/out/raxtax-5ba55996106ce201) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test utils::tests::test_euclidean_norm ... ok [INFO] [stdout] test utils::tests::test_sequence_to_kmers ... ok [INFO] [stdout] test utils::tests::test_euclidean_distance ... ok [INFO] [stdout] test utils::tests::test_decompress_sequence ... ok [INFO] [stdout] test prob::tests::test_pmf ... ok [INFO] [stdout] test prob::tests::test_hit_prob ... ok [INFO] [stdout] test utils::tests::test_cosine_similarity ... ok [INFO] [stdout] test parser::tests::test_query_parser ... ok [INFO] [stdout] test utils::tests::test_map ... ok [INFO] [stdout] test lineage::tests::test_taxonomic_binning_weird_bins ... ok [INFO] [stdout] test lineage::tests::test_likelihood_edge_case ... ok [INFO] [stdout] test lineage::tests::test_variable_lineage_length ... ok [INFO] [stdout] test parser::tests::test_kmers ... ok [INFO] [stdout] test lineage::tests::test_tree_construction ... ok [INFO] [stdout] test parser::tests::test_str_parser ... ok [INFO] [stdout] test lineage::tests::test_taxonomic_binning ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/release/build/raxtax/f0cc9447da622eb4/out/raxtax-f0cc9447da622eb4) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests raxtax [INFO] [stderr] warning: unnecessary parentheses around closure body [INFO] [stderr] --> src/lineage.rs:96:27 [INFO] [stderr] | [INFO] [stderr] 96 | .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 96 - .map(|&v| (v - 1.0 / self.tree.num_tips as f64)), [INFO] [stderr] 96 + .map(|&v| v - 1.0 / self.tree.num_tips as f64), [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91", kill_on_drop: false }` [INFO] [stdout] 6fb2fa5b94cb1896b5d86e174aed41ba057cb0bc418f929355f7fdbb7b711a91