[INFO] fetching crate convert_genome 0.3.4... [INFO] testing convert_genome-0.3.4 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2 [INFO] extracting crate convert_genome 0.3.4 into /workspace/builds/worker-2-tc2/source [INFO] removed /workspace/builds/worker-2-tc2/source/rust-toolchain.toml [INFO] started tweaking crates.io crate convert_genome 0.3.4 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate convert_genome 0.3.4 [INFO] tweaked toml for crates.io crate convert_genome 0.3.4 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate convert_genome 0.3.4 on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate convert_genome 0.3.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a [INFO] running `Command { std: "docker" "start" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling simd-adler32 v0.3.9 [INFO] [stderr] Compiling zlib-rs v0.6.3 [INFO] [stderr] Compiling openssl-src v300.6.1+3.6.3 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling bitflags v2.11.1 [INFO] [stderr] Compiling tokio v1.52.1 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling zerofrom v0.1.7 [INFO] [stderr] Compiling openssl v0.10.78 [INFO] [stderr] Compiling futures-util v0.3.32 [INFO] [stderr] Compiling encoding_rs v0.8.35 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Compiling libz-sys v1.1.28 [INFO] [stderr] Compiling yoke v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling grep-matcher v0.1.8 [INFO] [stderr] Compiling zerovec v0.11.6 [INFO] [stderr] Compiling zerotrie v0.2.4 [INFO] [stderr] Compiling openssl-sys v0.9.114 [INFO] [stderr] Compiling memmap2 v0.9.10 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling curl-sys v0.4.87+curl-8.19.0 [INFO] [stderr] Compiling tinystr v0.8.3 [INFO] [stderr] Compiling potential_utf v0.1.5 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Compiling dirs-sys v0.5.0 [INFO] [stderr] Compiling iri-string v0.7.12 [INFO] [stderr] Compiling icu_locale_core v2.2.0 [INFO] [stderr] Compiling icu_collections v2.2.0 [INFO] [stderr] Compiling tracing v0.1.44 [INFO] [stderr] Compiling console v0.15.11 [INFO] [stderr] Compiling encoding_rs_io v0.1.7 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Compiling bumpalo v3.20.2 [INFO] [stderr] Compiling num-conv v0.2.1 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling curl v0.4.49 [INFO] [stderr] Compiling time-macros v0.2.27 [INFO] [stderr] Compiling zopfli v0.8.3 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling rayon v1.12.0 [INFO] [stderr] Compiling icu_provider v2.2.0 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling icu_properties v2.2.0 [INFO] [stderr] Compiling icu_normalizer v2.2.0 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling noodles-bgzf v0.43.0 [INFO] [stderr] Compiling clap v4.6.1 [INFO] [stderr] Compiling tempfile v3.27.0 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling dirs v6.0.0 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling url v2.5.8 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling thread_local v1.1.9 [INFO] [stderr] Compiling noodles-tabix v0.57.0 [INFO] [stderr] Compiling nu-ansi-term v0.50.3 [INFO] [stderr] Compiling noodles-vcf v0.81.0 [INFO] [stderr] Compiling tokio-util v0.7.18 [INFO] [stderr] Compiling tower v0.5.3 [INFO] [stderr] Compiling md5 v0.8.0 [INFO] [stderr] Compiling time v0.3.47 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling rust-lapper v1.2.0 [INFO] [stderr] Compiling zip v6.0.0 [INFO] [stderr] Compiling lru v0.16.4 [INFO] [stderr] Compiling directories v6.0.0 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.23 [INFO] [stderr] Compiling infer_sex v0.1.2 [INFO] [stderr] Compiling h2 v0.4.13 [INFO] [stderr] Compiling tower-http v0.6.8 [INFO] [stderr] Compiling globset v0.4.18 [INFO] [stderr] Compiling grep-searcher v0.1.16 [INFO] [stderr] Compiling grep-regex v0.1.14 [INFO] [stderr] Compiling grep-printer v0.3.1 [INFO] [stderr] Compiling grep-cli v0.1.12 [INFO] [stderr] Compiling grep v0.4.1 [INFO] [stderr] Compiling noodles-bcf v0.78.0 [INFO] [stderr] Compiling convert_genome v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Compiling noodles v0.101.0 [INFO] [stderr] Compiling hyper v1.9.0 [INFO] [stderr] Compiling hyper-util v0.1.20 [INFO] [stderr] Compiling native-tls v0.2.18 [INFO] [stderr] Compiling tokio-native-tls v0.3.1 [INFO] [stderr] Compiling hyper-tls v0.6.0 [INFO] [stderr] Compiling reqwest v0.12.28 [INFO] [stderr] Compiling check_build v0.4.0 [INFO] [stderr] Finished `release` profile [optimized] target(s) in 4m 26s [INFO] running `Command { std: "docker" "inspect" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling zerocopy v0.8.48 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling zerocopy-derive v0.8.48 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling rayon v1.12.0 [INFO] [stderr] Compiling predicates-core v1.0.10 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling doc-comment v0.3.4 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling assert_cmd v2.2.1 [INFO] [stderr] Compiling sdd v3.0.10 [INFO] [stderr] Compiling criterion-plot v0.6.0 [INFO] [stderr] Compiling rand_core v0.9.5 [INFO] [stderr] Compiling predicates-tree v1.0.13 [INFO] [stderr] Compiling futures-executor v0.3.32 [INFO] [stderr] Compiling rusty-fork v0.3.1 [INFO] [stderr] Compiling serial_test_derive v3.4.0 [INFO] [stderr] Compiling rand_xorshift v0.4.0 [INFO] [stderr] Compiling rand v0.9.4 [INFO] [stderr] Compiling scc v2.4.0 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Compiling predicates v3.1.4 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling diff v0.1.13 [INFO] [stderr] Compiling pretty_assertions v1.4.1 [INFO] [stderr] Compiling reqwest v0.12.28 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling serial_test v3.4.0 [INFO] [stderr] Compiling check_build v0.4.0 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling proptest v1.11.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.23 [INFO] [stderr] Compiling criterion v0.7.0 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling globset v0.4.18 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling ignore v0.4.25 [INFO] [stderr] Compiling noodles-tabix v0.57.0 [INFO] [stderr] Compiling noodles-vcf v0.81.0 [INFO] [stderr] Compiling globwalk v0.9.1 [INFO] [stderr] Compiling assert_fs v1.1.3 [INFO] [stderr] Compiling noodles-bcf v0.78.0 [INFO] [stderr] Compiling noodles v0.101.0 [INFO] [stderr] Compiling convert_genome v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `release` profile [optimized] target(s) in 2m 03s [INFO] running `Command { std: "docker" "inspect" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] Finished `release` profile [optimized] target(s) in 0.56s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/release/build/convert_genome/ab48f98a42b07aad/out/convert_genome-ab48f98a42b07aad) [INFO] [stdout] [INFO] [stdout] running 73 tests [INFO] [stdout] test conversion::tests::determine_ploidy_handles_unknown_sex ... ok [INFO] [stdout] test cli::tests::input_build_is_optional_and_defaults_to_none ... ok [INFO] [stdout] test cli::tests::parses_input_build_flag ... ok [INFO] [stdout] test conversion::tests::gate_passes_for_a_healthy_conversion ... ok [INFO] [stdout] test cli::tests::parses_output_build_flag ... ok [INFO] [stdout] test cli::tests::assembly_flag_is_rejected ... ok [INFO] [stdout] test cli::tests::parses_output_dir_without_reference ... ok [INFO] [stdout] test conversion::tests::gate_rejects_low_build_confidence ... ok [INFO] [stdout] test dtc::tests::parses_ancestry_5col ... ok [INFO] [stdout] test conversion::tests::gate_rejects_high_parse_error_ratio ... ok [INFO] [stdout] test conversion::tests::genotype_parsing ... ok [INFO] [stdout] test conversion::tests::gate_rejects_sparse_output ... ok [INFO] [stdout] test dtc::tests::parses_decodeme_6col_flipped ... ok [INFO] [stdout] test cli::tests::parses_explicit_reference_flag ... ok [INFO] [stdout] test dtc::tests::rejects_id_with_embedded_whitespace ... ok [INFO] [stdout] test dtc::tests::spill_line_round_trips_metrics ... ok [INFO] [stdout] test dtc::tests::spill_line_round_trips_without_metrics ... ok [INFO] [stdout] test conversion::tests::test_vcf_header_symbolic_alleles ... ok [INFO] [stdout] test conversion::tests::parse_error_gate_allows_a_few_bad_lines ... ok [INFO] [stdout] test conversion::tests::gate_rejects_empty_output ... ok [INFO] [stdout] test genomestudio::tests::extracts_plus_alleles_and_skips_unmapped ... ok [INFO] [stdout] test genomestudio::tests::parses_header_metadata ... ok [INFO] [stdout] test genomestudio::tests::rejects_snp_name_with_forbidden_chars ... ok [INFO] [stdout] test genomestudio::tests::requires_plus_alleles ... ok [INFO] [stdout] test dtc::tests::parses_csv_quoted ... ok [INFO] [stdout] test harmonize::tests::test_ambiguous_flip_prevention ... ok [INFO] [stdout] test conversion::tests::build_header_sets_contigs_and_metadata ... ok [INFO] [stdout] test harmonize::tests::test_complement_seq ... ok [INFO] [stdout] test genomestudio::tests::locks_onto_first_sample ... ok [INFO] [stdout] test harmonize::tests::test_complement ... ok [INFO] [stdout] test harmonize::tests::test_is_ambiguous_snp ... ok [INFO] [stdout] test dtc::tests::spill_line_round_trips_partial_metrics ... ok [INFO] [stdout] test dtc::tests::accepts_normal_rsid ... ok [INFO] [stdout] test inference::tests::test_classify_chromosome ... ok [INFO] [stdout] test inference::tests::test_infer_sex_indeterminate_without_sex_chromosomes ... ok [INFO] [stdout] test dtc::tests::parse_basic_record ... ok [INFO] [stdout] test conversion::tests::format_genotype_strings ... ok [INFO] [stdout] test liftover::tests::test_lift_overlap_score_tie_is_ambiguous ... ok [INFO] [stdout] test liftover::tests::test_lift_point_reverse ... ok [INFO] [stdout] test liftover::tests::test_liftover_adapter_round_trip ... ok [INFO] [stdout] test liftover::tests::test_ref_swap_logic ... ok [INFO] [stdout] test panel::tests::panel_site_allele_index ... ok [INFO] [stdout] test liftover::tests::test_lift_point_forward ... ok [INFO] [stdout] test liftover::tests::test_lift_unmapped_returns_error ... ok [INFO] [stdout] test harmonize::tests::test_flip_when_no_ref_match ... ok [INFO] [stdout] test genomestudio::tests::column_order_is_by_name_not_position ... ok [INFO] [stdout] test cli::tests::parses_output_without_reference_positional ... ok [INFO] [stdout] test liftover::tests::test_lift_ambiguous_returns_error ... ok [INFO] [stdout] test reference::tests::reference_fetches_base ... ok [INFO] [stdout] test inference::tests::test_is_heterozygous ... ok [INFO] [stdout] test genomestudio::tests::parses_array_metrics ... ok [INFO] [stdout] test panel::tests::panel_site_has_allele ... ok [INFO] [stdout] test dtc::tests::reader_skips_comments_and_detects_build ... ok [INFO] [stdout] test panel_writer::tests::test_site_to_record ... ok [INFO] [stdout] test conversion::tests::gates_are_tunable_to_accept_a_small_panel ... ok [INFO] [stdout] test panel_writer::tests::test_is_gzip_path_extensions ... ok [INFO] [stdout] test dtc::tests::rejects_id_with_semicolon ... ok [INFO] [stdout] test reference::tests::reference_reads_wrapped_fasta_sequence ... ok [INFO] [stdout] test conversion::tests::build_confidence_gate_is_bypassed_by_explicit_input_build ... ok [INFO] [stdout] test panel_writer::tests::test_padded_panel_reads_all_concatenated_gzip_members ... ok [INFO] [stdout] test genomestudio::tests::detector_recognizes_reports ... ok [INFO] [stdout] test reference::tests::reference_resolves_numeric_sex_chromosomes ... ok [INFO] [stdout] test panel_writer::tests::test_padded_panel_output_sorted_by_position ... ok [INFO] [stdout] test panel_writer::tests::test_padded_panel_includes_samples_for_novel_sites ... ok [INFO] [stdout] test remote::tests::decompresses_gzip_files ... ok [INFO] [stdout] test reference::tests::single_line_and_wrapped_fasta_have_identical_bases ... ok [INFO] [stdout] test vcf_utils::tests::test_remap_gt_string ... ok [INFO] [stdout] test report::tests::sex_name_maps_unknown ... ok [INFO] [stdout] test plink::tests::test_multiallelic_split ... ok [INFO] [stdout] test remote::tests::extracts_nested_compressed_files ... ok [INFO] [stdout] test liftover::tests::test_chain_map_loading ... ok [INFO] [stdout] test remote::tests::extracts_zip_archives ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/release/build/convert_genome/b2357ee29976e6af/out/convert_genome-b2357ee29976e6af) [INFO] [stdout] test reference::tests::stale_fai_is_rebuilt_after_fasta_rewrap ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 73 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.03s [INFO] [stdout] [INFO] [stderr] Running tests/compression_tests.rs (/opt/rustwide/target/release/build/convert_genome/bdffe8b9b9eecbfc/out/compression_tests-bdffe8b9b9eecbfc) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test test_vcf_gz_zip ... FAILED [INFO] [stdout] test test_vcf_gz ... FAILED [INFO] [stdout] test test_lying_extension_zip_as_gz ... FAILED [INFO] [stdout] test test_plain_vcf ... FAILED [INFO] [stdout] test test_vcf_zip ... FAILED [INFO] [stdout] test test_dtc_nested_compression ... FAILED [INFO] [stdout] test test_dtc_with_comments ... FAILED [INFO] [stdout] test test_double_gz ... FAILED [INFO] [stdout] test test_lying_extension_gz_as_txt ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_vcf_gz_zip stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_vcf_gz_zip' (14615) panicked at tests/compression_tests.rs:163:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8b545 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_vcf_gz stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_vcf_gz' (14614) panicked at tests/compression_tests.rs:134:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8a505 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_lying_extension_zip_as_gz stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_lying_extension_zip_as_gz' (14612) panicked at tests/compression_tests.rs:220:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8d0cd - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_plain_vcf stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_plain_vcf' (14613) panicked at tests/compression_tests.rs:120:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8b121 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_vcf_zip stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_vcf_zip' (14616) panicked at tests/compression_tests.rs:148:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8a8e5 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_dtc_nested_compression stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_dtc_nested_compression' (14609) panicked at tests/compression_tests.rs:241:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: failed to load source reference for strand inference [INFO] [stdout] [INFO] [stdout] Caused by: [INFO] [stdout] 0: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz [INFO] [stdout] 1: [6] Could not resolve hostname (Could not resolve host: hgdownload.soe.ucsc.edu) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: >::from [INFO] [stdout] 1: convert_genome::remote::fetch_remote_resource [INFO] [stdout] 2: convert_genome::source_ref::load_source_reference [INFO] [stdout] 3: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 4: >::call_once [INFO] [stdout] 5: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 6: test::run_test::{closure#0} [INFO] [stdout] 7: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 8: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 9: ::new::thread_start [INFO] [stdout] 10: [INFO] [stdout] 11: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8c142 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_dtc_with_comments stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_dtc_with_comments' (14610) panicked at tests/compression_tests.rs:24:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: failed to load source reference for strand inference [INFO] [stdout] [INFO] [stdout] Caused by: [INFO] [stdout] 0: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz [INFO] [stdout] 1: [6] Could not resolve hostname (Could not resolve host: hgdownload.soe.ucsc.edu) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: >::from [INFO] [stdout] 1: convert_genome::remote::fetch_remote_resource [INFO] [stdout] 2: convert_genome::source_ref::load_source_reference [INFO] [stdout] 3: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 4: >::call_once [INFO] [stdout] 5: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 6: test::run_test::{closure#0} [INFO] [stdout] 7: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 8: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 9: ::new::thread_start [INFO] [stdout] 10: [INFO] [stdout] 11: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8ba36 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_double_gz stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_double_gz' (14608) panicked at tests/compression_tests.rs:256:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8acc5 - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_lying_extension_gz_as_txt stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_lying_extension_gz_as_txt' (14611) panicked at tests/compression_tests.rs:189:44: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Build detection failed: failed to download https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz. Refusing to assume input matches target (GRCh38) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::msg:: [INFO] [stdout] 1: convert_genome::conversion::convert_dtc_file [INFO] [stdout] 2: >::call_once [INFO] [stdout] 3: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] 4: test::run_test::{closure#0} [INFO] [stdout] 5: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 6: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 7: ::new::thread_start [INFO] [stdout] 8: [INFO] [stdout] 9: clone [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5eff7a3a9de1 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x5eff7a3c3b7a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x5eff7a3af4dc - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x5eff7a381a16 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x5eff7a3a02d9 - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x5eff79c9b560 - test[aada8e7e76ba119b]::test_main_inner::{closure#0} [INFO] [stdout] 6: 0x5eff7a3a0602 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 7: 0x5eff7a381ac2 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 8: 0x5eff7a379fe9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 9: 0x5eff7a382abd - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 10: 0x5eff7a3c42dc - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 11: 0x5eff7a3c40b2 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 12: 0x5eff79c8c98e - >::call_once [INFO] [stdout] 13: 0x5eff79c8e9ab - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x5eff79c9bb85 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x5eff79c95474 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x5eff79c9ec12 - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x5eff7a3a8fef - ::new::thread_start [INFO] [stdout] 18: 0x7a4ca902edfa - [INFO] [stdout] 19: 0x7a4ca90c23d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_double_gz [INFO] [stdout] test_dtc_nested_compression [INFO] [stdout] test_dtc_with_comments [INFO] [stdout] test_lying_extension_gz_as_txt [INFO] [stdout] test_lying_extension_zip_as_gz [INFO] [stdout] test_plain_vcf [INFO] [stdout] test_vcf_gz [INFO] [stdout] test_vcf_gz_zip [INFO] [stdout] test_vcf_zip [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 9 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--test compression_tests` [INFO] running `Command { std: "docker" "inspect" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a", kill_on_drop: false }` [INFO] [stdout] 487c45fc29ef16283501e8691cf56dfa88a945072eeff9114b157d974e5a8b2a