[INFO] cloning repository https://github.com/fullscreen-triangle/levinthal
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fullscreen-triangle/levinthal" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffullscreen-triangle%2Flevinthal", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffullscreen-triangle%2Flevinthal'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ce4bbea7e4fe47161a2b53ddad50802c4c64856e
[INFO] testing fullscreen-triangle/levinthal against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffullscreen-triangle%2Flevinthal" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
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[INFO] started tweaking git repo https://github.com/fullscreen-triangle/levinthal
[INFO] finished tweaking git repo https://github.com/fullscreen-triangle/levinthal
[INFO] tweaked toml for git repo https://github.com/fullscreen-triangle/levinthal written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/fullscreen-triangle/levinthal on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/fullscreen-triangle/levinthal already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `anyhow`
[INFO] [stderr]  --> Cargo.toml:6:1
[INFO] [stderr]   |
[INFO] [stderr] 6 | anyhow = "1.0"
[INFO] [stderr]   | ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `anyhow`
[INFO] [stderr] warning: unused workspace dependency `clap`
[INFO] [stderr]   --> Cargo.toml:19:25
[INFO] [stderr]    |
[INFO] [stderr] 19 | [workspace.dependencies.clap]
[INFO] [stderr]    |                         ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `clap`
[INFO] [stderr] warning: unused workspace dependency `ndarray`
[INFO] [stderr]  --> Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | ndarray = "0.15"
[INFO] [stderr]   | ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the workspace dependency `ndarray`
[INFO] [stderr] warning: unused workspace dependency `rand_distr`
[INFO] [stderr]   --> Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | rand_distr = "0.4"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rand_distr`
[INFO] [stderr] warning: unused workspace dependency `rayon`
[INFO] [stderr]   --> Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | rayon = "1.8"
[INFO] [stderr]    | ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rayon`
[INFO] [stderr] warning: unused workspace dependency `serde_json`
[INFO] [stderr]   --> Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `serde_json`
[INFO] [stderr] warning: unused workspace dependency `tracing`
[INFO] [stderr]   --> Cargo.toml:17:1
[INFO] [stderr]    |
[INFO] [stderr] 17 | tracing = "0.1"
[INFO] [stderr]    | ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing`
[INFO] [stderr] warning: unused workspace dependency `tracing-subscriber`
[INFO] [stderr]   --> Cargo.toml:27:25
[INFO] [stderr]    |
[INFO] [stderr] 27 | [workspace.dependencies.tracing-subscriber]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing-subscriber`
[INFO] [stderr] warning: unused field `description` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:33:1
[INFO] [stderr]    |
[INFO] [stderr] 33 | description = "Protein folding as trajectory completion through categorical state navigation"
[INFO] [stderr]    | ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.description`
[INFO] [stderr] warning: unused field `repository` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:36:1
[INFO] [stderr]    |
[INFO] [stderr] 36 | repository = "https://github.com/kundai-sachikonye/levinthal"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the field `workspace.package.repository`
[INFO] [stderr] warning: workspace (manifest) generated 10 warnings
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b
[INFO] running `Command { std: "docker" "start" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `anyhow`
[INFO] [stderr]  --> Cargo.toml:6:1
[INFO] [stderr]   |
[INFO] [stderr] 6 | anyhow = "1.0"
[INFO] [stderr]   | ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `anyhow`
[INFO] [stderr] warning: unused workspace dependency `clap`
[INFO] [stderr]   --> Cargo.toml:19:25
[INFO] [stderr]    |
[INFO] [stderr] 19 | [workspace.dependencies.clap]
[INFO] [stderr]    |                         ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `clap`
[INFO] [stderr] warning: unused workspace dependency `ndarray`
[INFO] [stderr]  --> Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | ndarray = "0.15"
[INFO] [stderr]   | ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the workspace dependency `ndarray`
[INFO] [stderr] warning: unused workspace dependency `rand_distr`
[INFO] [stderr]   --> Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | rand_distr = "0.4"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rand_distr`
[INFO] [stderr] warning: unused workspace dependency `rayon`
[INFO] [stderr]   --> Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | rayon = "1.8"
[INFO] [stderr]    | ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rayon`
[INFO] [stderr] warning: unused workspace dependency `serde_json`
[INFO] [stderr]   --> Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `serde_json`
[INFO] [stderr] warning: unused workspace dependency `tracing`
[INFO] [stderr]   --> Cargo.toml:17:1
[INFO] [stderr]    |
[INFO] [stderr] 17 | tracing = "0.1"
[INFO] [stderr]    | ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing`
[INFO] [stderr] warning: unused workspace dependency `tracing-subscriber`
[INFO] [stderr]   --> Cargo.toml:27:25
[INFO] [stderr]    |
[INFO] [stderr] 27 | [workspace.dependencies.tracing-subscriber]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing-subscriber`
[INFO] [stderr] warning: unused field `description` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:33:1
[INFO] [stderr]    |
[INFO] [stderr] 33 | description = "Protein folding as trajectory completion through categorical state navigation"
[INFO] [stderr]    | ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.description`
[INFO] [stderr] warning: unused field `repository` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:36:1
[INFO] [stderr]    |
[INFO] [stderr] 36 | repository = "https://github.com/kundai-sachikonye/levinthal"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the field `workspace.package.repository`
[INFO] [stderr] warning: workspace (manifest) generated 10 warnings
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling zerocopy v0.8.38
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling zmij v1.0.19
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling clap_builder v4.5.57
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling clap v4.5.57
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling levinthal-core v0.1.0 (/opt/rustwide/workdir/crates/levinthal-core)
[INFO] [stderr]    Compiling levinthal-folding v0.1.0 (/opt/rustwide/workdir/crates/levinthal-folding)
[INFO] [stderr]    Compiling levinthal-msms v0.1.0 (/opt/rustwide/workdir/crates/levinthal-msms)
[INFO] [stderr]    Compiling levinthal-cli v0.1.0 (/opt/rustwide/workdir/crates/levinthal-cli)
[INFO] [stderr] warning: unused dependency `levinthal-msms`
[INFO] [stderr]   --> crates/levinthal-cli/Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | levinthal-msms = { path = "../levinthal-msms" }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `levinthal-msms`
[INFO] [stderr] warning: unused dependency `serde_json`
[INFO] [stderr]   --> crates/levinthal-cli/Cargo.toml:19:1
[INFO] [stderr]    |
[INFO] [stderr] 19 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `serde_json`
[INFO] [stderr] warning: `levinthal-cli` (manifest) generated 2 warnings
[INFO] [stderr] warning: unused dependency `nalgebra`
[INFO] [stderr]   --> crates/levinthal-core/Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | nalgebra.workspace = true
[INFO] [stderr]    | ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `nalgebra`
[INFO] [stderr] warning: unused dependency `rand`
[INFO] [stderr]   --> crates/levinthal-core/Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | rand.workspace = true
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `rand`
[INFO] [stderr] warning: `levinthal-core` (manifest) generated 2 warnings
[INFO] [stderr] warning: unused dependency `levinthal-core`
[INFO] [stderr]   --> crates/levinthal-folding/Cargo.toml:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | levinthal-core = { path = "../levinthal-core" }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `levinthal-core`
[INFO] [stderr] warning: `levinthal-folding` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 42.56s
[INFO] running `Command { std: "docker" "inspect" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `anyhow`
[INFO] [stderr]  --> Cargo.toml:6:1
[INFO] [stderr]   |
[INFO] [stderr] 6 | anyhow = "1.0"
[INFO] [stderr]   | ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `anyhow`
[INFO] [stderr] warning: unused workspace dependency `clap`
[INFO] [stderr]   --> Cargo.toml:19:25
[INFO] [stderr]    |
[INFO] [stderr] 19 | [workspace.dependencies.clap]
[INFO] [stderr]    |                         ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `clap`
[INFO] [stderr] warning: unused workspace dependency `ndarray`
[INFO] [stderr]  --> Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | ndarray = "0.15"
[INFO] [stderr]   | ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the workspace dependency `ndarray`
[INFO] [stderr] warning: unused workspace dependency `rand_distr`
[INFO] [stderr]   --> Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | rand_distr = "0.4"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rand_distr`
[INFO] [stderr] warning: unused workspace dependency `rayon`
[INFO] [stderr]   --> Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | rayon = "1.8"
[INFO] [stderr]    | ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rayon`
[INFO] [stderr] warning: unused workspace dependency `serde_json`
[INFO] [stderr]   --> Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `serde_json`
[INFO] [stderr] warning: unused workspace dependency `tracing`
[INFO] [stderr]   --> Cargo.toml:17:1
[INFO] [stderr]    |
[INFO] [stderr] 17 | tracing = "0.1"
[INFO] [stderr]    | ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing`
[INFO] [stderr] warning: unused workspace dependency `tracing-subscriber`
[INFO] [stderr]   --> Cargo.toml:27:25
[INFO] [stderr]    |
[INFO] [stderr] 27 | [workspace.dependencies.tracing-subscriber]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing-subscriber`
[INFO] [stderr] warning: unused field `description` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:33:1
[INFO] [stderr]    |
[INFO] [stderr] 33 | description = "Protein folding as trajectory completion through categorical state navigation"
[INFO] [stderr]    | ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.description`
[INFO] [stderr] warning: unused field `repository` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:36:1
[INFO] [stderr]    |
[INFO] [stderr] 36 | repository = "https://github.com/kundai-sachikonye/levinthal"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the field `workspace.package.repository`
[INFO] [stderr] warning: workspace (manifest) generated 10 warnings
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling levinthal-core v0.1.0 (/opt/rustwide/workdir/crates/levinthal-core)
[INFO] [stderr]    Compiling levinthal-msms v0.1.0 (/opt/rustwide/workdir/crates/levinthal-msms)
[INFO] [stderr]    Compiling levinthal-folding v0.1.0 (/opt/rustwide/workdir/crates/levinthal-folding)
[INFO] [stderr]    Compiling levinthal-cli v0.1.0 (/opt/rustwide/workdir/crates/levinthal-cli)
[INFO] [stderr] warning: unused dependency `levinthal-msms`
[INFO] [stderr]   --> crates/levinthal-cli/Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | levinthal-msms = { path = "../levinthal-msms" }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `levinthal-msms`
[INFO] [stderr] warning: unused dependency `serde_json`
[INFO] [stderr]   --> crates/levinthal-cli/Cargo.toml:19:1
[INFO] [stderr]    |
[INFO] [stderr] 19 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `serde_json`
[INFO] [stderr] warning: `levinthal-cli` (manifest) generated 2 warnings
[INFO] [stderr] warning: unused dependency `nalgebra`
[INFO] [stderr]   --> crates/levinthal-core/Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | nalgebra.workspace = true
[INFO] [stderr]    | ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `nalgebra`
[INFO] [stderr] warning: unused dependency `rand`
[INFO] [stderr]   --> crates/levinthal-core/Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | rand.workspace = true
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `rand`
[INFO] [stderr] warning: `levinthal-core` (manifest) generated 2 warnings
[INFO] [stderr] warning: unused dependency `levinthal-core`
[INFO] [stderr]   --> crates/levinthal-folding/Cargo.toml:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | levinthal-core = { path = "../levinthal-core" }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `levinthal-core`
[INFO] [stderr] warning: `levinthal-folding` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 17.91s
[INFO] running `Command { std: "docker" "inspect" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `anyhow`
[INFO] [stderr]  --> Cargo.toml:6:1
[INFO] [stderr]   |
[INFO] [stderr] 6 | anyhow = "1.0"
[INFO] [stderr]   | ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `anyhow`
[INFO] [stderr] warning: unused workspace dependency `clap`
[INFO] [stderr]   --> Cargo.toml:19:25
[INFO] [stderr]    |
[INFO] [stderr] 19 | [workspace.dependencies.clap]
[INFO] [stderr]    |                         ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `clap`
[INFO] [stderr] warning: unused workspace dependency `ndarray`
[INFO] [stderr]  --> Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | ndarray = "0.15"
[INFO] [stderr]   | ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the workspace dependency `ndarray`
[INFO] [stderr] warning: unused workspace dependency `rand_distr`
[INFO] [stderr]   --> Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | rand_distr = "0.4"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rand_distr`
[INFO] [stderr] warning: unused workspace dependency `rayon`
[INFO] [stderr]   --> Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | rayon = "1.8"
[INFO] [stderr]    | ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rayon`
[INFO] [stderr] warning: unused workspace dependency `serde_json`
[INFO] [stderr]   --> Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `serde_json`
[INFO] [stderr] warning: unused workspace dependency `tracing`
[INFO] [stderr]   --> Cargo.toml:17:1
[INFO] [stderr]    |
[INFO] [stderr] 17 | tracing = "0.1"
[INFO] [stderr]    | ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing`
[INFO] [stderr] warning: unused workspace dependency `tracing-subscriber`
[INFO] [stderr]   --> Cargo.toml:27:25
[INFO] [stderr]    |
[INFO] [stderr] 27 | [workspace.dependencies.tracing-subscriber]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `tracing-subscriber`
[INFO] [stderr] warning: unused field `description` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:33:1
[INFO] [stderr]    |
[INFO] [stderr] 33 | description = "Protein folding as trajectory completion through categorical state navigation"
[INFO] [stderr]    | ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.description`
[INFO] [stderr] warning: unused field `repository` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:36:1
[INFO] [stderr]    |
[INFO] [stderr] 36 | repository = "https://github.com/kundai-sachikonye/levinthal"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the field `workspace.package.repository`
[INFO] [stderr] warning: workspace (manifest) generated 10 warnings
[INFO] [stderr] warning: unused dependency `levinthal-msms`
[INFO] [stderr]   --> crates/levinthal-cli/Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | levinthal-msms = { path = "../levinthal-msms" }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `levinthal-msms`
[INFO] [stderr] warning: unused dependency `serde_json`
[INFO] [stderr]   --> crates/levinthal-cli/Cargo.toml:19:1
[INFO] [stderr]    |
[INFO] [stderr] 19 | serde_json = "1.0"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `serde_json`
[INFO] [stderr] warning: `levinthal-cli` (manifest) generated 2 warnings
[INFO] [stderr] warning: unused dependency `nalgebra`
[INFO] [stderr]   --> crates/levinthal-core/Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | nalgebra.workspace = true
[INFO] [stderr]    | ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `nalgebra`
[INFO] [stderr] warning: unused dependency `rand`
[INFO] [stderr]   --> crates/levinthal-core/Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | rand.workspace = true
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `rand`
[INFO] [stderr] warning: `levinthal-core` (manifest) generated 2 warnings
[INFO] [stderr] warning: unused dependency `levinthal-core`
[INFO] [stderr]   --> crates/levinthal-folding/Cargo.toml:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | levinthal-core = { path = "../levinthal-core" }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `levinthal-core`
[INFO] [stderr] warning: `levinthal-folding` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/levinthal-cli/378ef9ee1df47a5d/out/levinthal-378ef9ee1df47a5d)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/levinthal-core/c4519c241f5a1db2/out/levinthal_core-c4519c241f5a1db2)
[INFO] [stdout] 
[INFO] [stdout] running 40 tests
[INFO] [stdout] test amino_acid::tests::test_code_roundtrip ... ok
[INFO] [stdout] test amino_acid::tests::test_charged_high_se ... ok
[INFO] [stdout] test partition::tests::test_subshell_capacities ... ok
[INFO] [stdout] test partition::tests::test_enumeration_matches_capacity ... ok
[INFO] [stdout] test partition::tests::test_partition_operation ... ok
[INFO] [stdout] test partition::tests::test_valid_state_creation ... ok
[INFO] [stdout] test amino_acid::tests::test_from_code ... ok
[INFO] [stdout] test sentropy::tests::test_clamped ... ok
[INFO] [stdout] test sentropy::tests::test_distance ... ok
[INFO] [stdout] test sentropy::tests::test_lerp ... ok
[INFO] [stdout] test amino_acid::tests::test_hydrophobicity_range ... ok
[INFO] [stdout] test sentropy::tests::test_shannon_entropy ... ok
[INFO] [stdout] test sentropy::tests::test_valid_coordinates ... ok
[INFO] [stdout] test amino_acid::tests::test_sentropy_in_range ... ok
[INFO] [stdout] test partition::tests::test_invalid_state_creation ... ok
[INFO] [stdout] test sentropy::tests::test_classification ... ok
[INFO] [stdout] test amino_acid::tests::test_category_assignment ... ok
[INFO] [stdout] test ternary::tests::test_ternary_string_project ... ok
[INFO] [stdout] test ternary::tests::test_ternary_string_compose ... ok
[INFO] [stdout] test ternary::tests::test_trit_counts ... ok
[INFO] [stdout] test ternary::tests::test_trit_creation ... ok
[INFO] [stdout] test ternary::tests::test_ternary_string_from_digits ... ok
[INFO] [stdout] test trajectory::tests::test_complexity_metrics ... ok
[INFO] [stdout] test ternary::tests::test_tryte_capacity ... ok
[INFO] [stdout] test amino_acid::tests::test_hydrophobic_high_sk ... ok
[INFO] [stdout] test ternary::tests::test_resolution ... ok
[INFO] [stdout] test partition::tests::test_selection_rules ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_builder_invalid ... ok
[INFO] [stdout] test amino_acid::tests::test_parse_sequence ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_validation ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_complete ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_slice ... ok
[INFO] [stdout] test trajectory::tests::test_coherence_profile ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_from_origin ... ok
[INFO] [stdout] test sentropy::tests::test_invalid_coordinates ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_reverse ... ok
[INFO] [stdout] test ternary::tests::test_tryte_decimal_conversion ... ok
[INFO] [stdout] test trajectory::tests::test_empty_trajectory_fails ... ok
[INFO] [stdout] test trajectory::tests::test_trajectory_builder ... ok
[INFO] [stdout] test partition::tests::test_capacity_formula ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 40 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/levinthal-folding/02653779e1e36589/out/levinthal_folding-02653779e1e36589)
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test coherence::tests::test_plv_synchronized ... ok
[INFO] [stdout] test coherence::tests::test_coherence_metrics ... ok
[INFO] [stdout] test coherence::tests::test_order_parameter_anti_phase ... ok
[INFO] [stdout] test coherence::tests::test_order_parameter_synchronized ... ok
[INFO] [stdout] test groel::tests::test_atp_modulation ... ok
[INFO] [stdout] test kuramoto::tests::test_oscillator_phase_wrap ... ok
[INFO] [stdout] test kuramoto::tests::test_chain_coupling ... ok
[INFO] [stdout] test kuramoto::tests::test_synchronized_order_parameter ... ok
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/levinthal-msms/60a690c35b9b48d9/out/levinthal_msms-60a690c35b9b48d9)
[INFO] [stdout] test kuramoto::tests::test_network_evolution ... ok
[INFO] [stdout] test groel::tests::test_chamber_creation ... ok
[INFO] [stdout] test groel::tests::test_folding_simulation ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test fragment::tests::test_fragment_type_terminal ... ok
[INFO] [stdout] test fragment::tests::test_fragment_annotation ... ok
[INFO] [stdout] test spectrum::tests::test_base_peak ... ok
[INFO] [stdout] test peptide::tests::test_sentropy_profile ... ok
[INFO] [stdout] test spectrum::tests::test_find_peaks ... ok
[INFO] [stdout] test peptide::tests::test_fragment_generation ... ok
[INFO] [stdout] test spectrum::tests::test_spectrum_creation ... ok
[INFO] [stdout] test peptide::tests::test_peptide_creation ... ok
[INFO] [stdout] test peptide::tests::test_mass_calculation ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests levinthal_core
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test crates/levinthal-core/src/trajectory.rs - trajectory::Trajectory::complete (line 71) ... ok
[INFO] [stdout] test crates/levinthal-core/src/lib.rs - (line 25) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.24s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests levinthal_folding
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests levinthal_msms
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b", kill_on_drop: false }`
[INFO] [stdout] c74cca764d7a7c47c2927ff5b53ec6fbf2ae5d32dc17aca2615238d3c934a80b