[INFO] cloning repository https://github.com/HuangShiLab/meta2bseek [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HuangShiLab/meta2bseek" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHuangShiLab%2Fmeta2bseek", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHuangShiLab%2Fmeta2bseek'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 43cb452ae793d954d16a04e7faf3faac7080456b [INFO] testing HuangShiLab/meta2bseek against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHuangShiLab%2Fmeta2bseek" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/HuangShiLab/meta2bseek [INFO] finished tweaking git repo https://github.com/HuangShiLab/meta2bseek [INFO] tweaked toml for git repo https://github.com/HuangShiLab/meta2bseek written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/HuangShiLab/meta2bseek on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/HuangShiLab/meta2bseek already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c [INFO] running `Command { std: "docker" "start" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.184 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling unicode-ident v1.0.24 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling zerocopy v0.8.48 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling itoa v1.0.18 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling anstyle-parse v1.0.0 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.2 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling simd-adler32 v0.3.9 [INFO] 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[stderr] Compiling tikv-jemalloc-sys v0.5.4+5.3.0-patched [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling anyhow v1.0.102 [INFO] [stderr] Compiling num_threads v0.1.7 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling colored v2.2.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling indexmap v2.13.1 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling buffer-redux v1.1.0 [INFO] [stderr] Compiling time v0.3.47 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling humantime v2.3.0 [INFO] [stderr] Compiling ryu v1.0.23 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling siphasher v1.0.2 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] 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(/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `hash_bytes` [INFO] [stdout] --> src/contain.rs:2:24 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::constants::{hash_bytes, Hash}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `memory_stats::memory_stats` [INFO] [stdout] --> src/contain.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use memory_stats::memory_stats; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::thread` [INFO] [stdout] --> src/contain.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::thread; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::time::Duration` [INFO] [stdout] --> src/contain.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::Duration; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sample_entries` [INFO] [stdout] --> src/contain.rs:741:5 [INFO] [stdout] | [INFO] [stdout] 741 | sample_entries: &[SylspEntry] [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sample_entries` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `ReassignmentStats` is never constructed [INFO] [stdout] --> src/contain.rs:285:8 [INFO] [stdout] | [INFO] [stdout] 285 | struct ReassignmentStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `ani_from_lambda` is never used [INFO] [stdout] --> src/contain.rs:1122:4 [INFO] [stdout] | [INFO] [stdout] 1122 | fn ani_from_lambda(lambda: f64, k: f64, full_covs: &[u32]) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract_genome_id` is never used [INFO] [stdout] --> src/contain.rs:2113:4 [INFO] [stdout] | [INFO] [stdout] 2113 | fn extract_genome_id(file_path: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_genome_mapping` is never used [INFO] [stdout] --> src/contain.rs:2317:4 [INFO] [stdout] | [INFO] [stdout] 2317 | fn read_genome_mapping(db_path: &str) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `hash_bytes` [INFO] [stdout] --> src/contain.rs:2:24 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::constants::{hash_bytes, Hash}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `memory_stats::memory_stats` [INFO] [stdout] --> src/contain.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use memory_stats::memory_stats; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::thread` [INFO] [stdout] --> src/contain.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::thread; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::time::Duration` [INFO] [stdout] --> src/contain.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::Duration; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ani_from_containment_one_mismatch` [INFO] [stdout] --> src/contain.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | ani_from_containment_one_mismatch, ani_from_containment_one_mismatch_err, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sample_entries` [INFO] [stdout] --> src/contain.rs:741:5 [INFO] [stdout] | [INFO] [stdout] 741 | sample_entries: &[SylspEntry] [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sample_entries` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QueryArgs` is never constructed [INFO] [stdout] --> src/cmdline.rs:356:12 [INFO] [stdout] | [INFO] [stdout] 356 | pub struct QueryArgs { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `p_detect_exact` is never used [INFO] [stdout] --> src/extract.rs:645:8 [INFO] [stdout] | [INFO] [stdout] 645 | pub fn p_detect_exact(a: f64, len: usize) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `GenomeSketchInspect` is never constructed [INFO] [stdout] --> src/extract.rs:955:12 [INFO] [stdout] | [INFO] [stdout] 955 | pub struct GenomeSketchInspect { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `DatabaseSketch` is never constructed [INFO] [stdout] --> src/extract.rs:974:12 [INFO] [stdout] | [INFO] [stdout] 974 | pub struct DatabaseSketch { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `Hash` is never used [INFO] [stdout] --> src/sketch.rs:20:10 [INFO] [stdout] | [INFO] [stdout] 20 | pub type Hash = u64; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `query_tags` is never read [INFO] [stdout] --> src/contain.rs:120:9 [INFO] [stdout] | [INFO] [stdout] 105 | pub struct QueryResult { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 120 | pub query_tags: usize, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `QueryResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `file_path` is never read [INFO] [stdout] --> src/contain.rs:130:9 [INFO] [stdout] | [INFO] [stdout] 127 | pub struct GenomeProfileResult { [INFO] [stdout] | ------------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 130 | pub file_path: String, // 新增字段,存储文件路径 [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `GenomeProfileResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `covered` is never read [INFO] [stdout] --> src/contain.rs:148:9 [INFO] [stdout] | [INFO] [stdout] 146 | pub struct AnchorConfidence { [INFO] [stdout] | ---------------- field in this struct [INFO] [stdout] 147 | /// 命中的锚点数 [INFO] [stdout] 148 | pub covered: usize, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AnchorConfidence` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `ReassignmentStats` is never constructed [INFO] [stdout] --> src/contain.rs:285:8 [INFO] [stdout] | [INFO] [stdout] 285 | struct ReassignmentStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `ani_from_lambda` is never used [INFO] [stdout] --> src/contain.rs:1122:4 [INFO] [stdout] | [INFO] [stdout] 1122 | fn ani_from_lambda(lambda: f64, k: f64, full_covs: &[u32]) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `query_single_file` is never used [INFO] [stdout] --> src/contain.rs:2035:8 [INFO] [stdout] | [INFO] [stdout] 2035 | pub fn query_single_file(sample_path: &str, db_path: &str, min_ani: f64, mismatch: usize, min_tags_genome: usize) -> Result src/contain.rs:2113:4 [INFO] [stdout] | [INFO] [stdout] 2113 | fn extract_genome_id(file_path: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_genome_mapping` is never used [INFO] [stdout] --> src/contain.rs:2317:4 [INFO] [stdout] | [INFO] [stdout] 2317 | fn read_genome_mapping(db_path: &str) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `DEFAULT_FPR` is never used [INFO] [stdout] --> src/constants.rs:18:11 [INFO] [stdout] | [INFO] [stdout] 18 | pub const DEFAULT_FPR: f64 = 0.0001; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `hash_string` is never used [INFO] [stdout] --> src/constants.rs:25:8 [INFO] [stdout] | [INFO] [stdout] 25 | pub fn hash_string(s: &str) -> Hash { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: unused dependency `env_logger` [INFO] [stderr] --> Cargo.toml:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | env_logger = "0.9" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `env_logger` [INFO] [stderr] warning: unused dependency `glob` [INFO] [stderr] --> Cargo.toml:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | glob = "0.3" [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `glob` [INFO] [stderr] warning: unused dependency `itertools` [INFO] [stderr] --> Cargo.toml:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | itertools = "0.11.0" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `itertools` [INFO] [stderr] warning: unused dependency `serde_json` [INFO] [stderr] --> Cargo.toml:16:1 [INFO] [stderr] | [INFO] [stderr] 16 | serde_json = "1.0" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `serde_json` [INFO] [stderr] warning: unused dependency `serde_yaml` [INFO] [stderr] --> Cargo.toml:17:1 [INFO] [stderr] | [INFO] [stderr] 17 | serde_yaml = "0.9" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `serde_yaml` [INFO] [stderr] warning: `meta2bmap` (manifest) generated 5 warnings [INFO] [stderr] Finished `release` profile [optimized + debuginfo] target(s) in 4m 06s [INFO] running `Command { std: "docker" "inspect" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stdout] warning: unused import: `hash_bytes` [INFO] [stdout] --> src/contain.rs:2:24 [INFO] [stdout] | [INFO] [stdout] 2 | use crate::constants::{hash_bytes, Hash}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `memory_stats::memory_stats` [INFO] [stdout] --> src/contain.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use memory_stats::memory_stats; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::thread` [INFO] [stdout] --> src/contain.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::thread; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::time::Duration` [INFO] [stdout] --> src/contain.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::Duration; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sample_entries` [INFO] [stdout] --> src/contain.rs:741:5 [INFO] [stdout] | [INFO] [stdout] 741 | sample_entries: &[SylspEntry] [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sample_entries` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `ReassignmentStats` is never constructed [INFO] [stdout] --> src/contain.rs:285:8 [INFO] [stdout] | [INFO] [stdout] 285 | struct ReassignmentStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `ani_from_lambda` is never used [INFO] [stdout] --> src/contain.rs:1122:4 [INFO] [stdout] | [INFO] [stdout] 1122 | fn ani_from_lambda(lambda: f64, k: f64, full_covs: &[u32]) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract_genome_id` is never used [INFO] [stdout] --> src/contain.rs:2113:4 [INFO] [stdout] | [INFO] [stdout] 2113 | fn extract_genome_id(file_path: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_genome_mapping` is never used [INFO] [stdout] --> src/contain.rs:2317:4 [INFO] [stdout] | [INFO] [stdout] 2317 | fn read_genome_mapping(db_path: &str) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling meta2bmap v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `memory_stats::memory_stats` [INFO] [stdout] --> src/contain.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use memory_stats::memory_stats; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::thread` [INFO] [stdout] --> src/contain.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::thread; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::time::Duration` [INFO] [stdout] --> src/contain.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::Duration; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `memory_stats::memory_stats` [INFO] [stdout] --> src/contain.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use memory_stats::memory_stats; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::thread` [INFO] [stdout] --> src/contain.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::thread; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::time::Duration` [INFO] [stdout] --> src/contain.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::time::Duration; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sample_entries` [INFO] [stdout] --> src/contain.rs:741:5 [INFO] [stdout] | [INFO] [stdout] 741 | sample_entries: &[SylspEntry] [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sample_entries` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sample_entries` [INFO] [stdout] --> src/contain.rs:741:5 [INFO] [stdout] | [INFO] [stdout] 741 | sample_entries: &[SylspEntry] [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sample_entries` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `ReassignmentStats` is never constructed [INFO] [stdout] --> src/contain.rs:285:8 [INFO] [stdout] | [INFO] [stdout] 285 | struct ReassignmentStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `ani_from_lambda` is never used [INFO] [stdout] --> src/contain.rs:1122:4 [INFO] [stdout] | [INFO] [stdout] 1122 | fn ani_from_lambda(lambda: f64, k: f64, full_covs: &[u32]) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `extract_genome_id` is never used [INFO] [stdout] --> src/contain.rs:2113:4 [INFO] [stdout] | [INFO] [stdout] 2113 | fn extract_genome_id(file_path: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_genome_mapping` is never used [INFO] [stdout] --> src/contain.rs:2317:4 [INFO] [stdout] | [INFO] [stdout] 2317 | fn read_genome_mapping(db_path: &str) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QueryArgs` is never constructed [INFO] [stdout] --> src/cmdline.rs:356:12 [INFO] [stdout] | [INFO] [stdout] 356 | pub struct QueryArgs { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `GenomeSketchInspect` is never constructed [INFO] [stdout] --> src/extract.rs:955:12 [INFO] [stdout] | [INFO] [stdout] 955 | pub struct GenomeSketchInspect { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `DatabaseSketch` is never constructed [INFO] [stdout] --> src/extract.rs:974:12 [INFO] [stdout] | [INFO] [stdout] 974 | pub struct DatabaseSketch { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `Hash` is never used [INFO] [stdout] --> src/sketch.rs:20:10 [INFO] [stdout] | [INFO] [stdout] 20 | pub type Hash = u64; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `query_tags` is never read [INFO] [stdout] --> src/contain.rs:120:9 [INFO] [stdout] | [INFO] [stdout] 105 | pub struct QueryResult { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 120 | pub query_tags: usize, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `QueryResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `file_path` is never read [INFO] [stdout] --> src/contain.rs:130:9 [INFO] [stdout] | [INFO] [stdout] 127 | pub struct GenomeProfileResult { [INFO] [stdout] | ------------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 130 | pub file_path: String, // 新增字段,存储文件路径 [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `GenomeProfileResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `ReassignmentStats` is never constructed [INFO] [stdout] --> src/contain.rs:285:8 [INFO] [stdout] | [INFO] [stdout] 285 | struct ReassignmentStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `ani_from_lambda` is never used [INFO] [stdout] --> src/contain.rs:1122:4 [INFO] [stdout] | [INFO] [stdout] 1122 | fn ani_from_lambda(lambda: f64, k: f64, full_covs: &[u32]) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `query_single_file` is never used [INFO] [stdout] --> src/contain.rs:2035:8 [INFO] [stdout] | [INFO] [stdout] 2035 | pub fn query_single_file(sample_path: &str, db_path: &str, min_ani: f64, mismatch: usize, min_tags_genome: usize) -> Result src/contain.rs:2113:4 [INFO] [stdout] | [INFO] [stdout] 2113 | fn extract_genome_id(file_path: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_genome_mapping` is never used [INFO] [stdout] --> src/contain.rs:2317:4 [INFO] [stdout] | [INFO] [stdout] 2317 | fn read_genome_mapping(db_path: &str) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `DEFAULT_FPR` is never used [INFO] [stdout] --> src/constants.rs:18:11 [INFO] [stdout] | [INFO] [stdout] 18 | pub const DEFAULT_FPR: f64 = 0.0001; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `hash_string` is never used [INFO] [stdout] --> src/constants.rs:25:8 [INFO] [stdout] | [INFO] [stdout] 25 | pub fn hash_string(s: &str) -> Hash { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: unused dependency `env_logger` [INFO] [stderr] --> Cargo.toml:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | env_logger = "0.9" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `env_logger` [INFO] [stderr] warning: unused dependency `glob` [INFO] [stderr] --> Cargo.toml:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | glob = "0.3" [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `glob` [INFO] [stderr] warning: unused dependency `itertools` [INFO] [stderr] --> Cargo.toml:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | itertools = "0.11.0" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `itertools` [INFO] [stderr] warning: unused dependency `serde_json` [INFO] [stderr] --> Cargo.toml:16:1 [INFO] [stderr] | [INFO] [stderr] 16 | serde_json = "1.0" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `serde_json` [INFO] [stderr] warning: unused dependency `serde_yaml` [INFO] [stderr] --> Cargo.toml:17:1 [INFO] [stderr] | [INFO] [stderr] 17 | serde_yaml = "0.9" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `serde_yaml` [INFO] [stderr] warning: `meta2bmap` (manifest) generated 5 warnings [INFO] [stderr] Finished `release` profile [optimized + debuginfo] target(s) in 47.33s [INFO] running `Command { std: "docker" "inspect" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `hash_bytes` [INFO] [stderr] --> src/contain.rs:2:24 [INFO] [stderr] | [INFO] [stderr] 2 | use crate::constants::{hash_bytes, Hash}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `memory_stats::memory_stats` [INFO] [stderr] --> src/contain.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | use memory_stats::memory_stats; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::thread` [INFO] [stderr] --> src/contain.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use std::thread; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::time::Duration` [INFO] [stderr] --> src/contain.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use std::time::Duration; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `sample_entries` [INFO] [stderr] --> src/contain.rs:741:5 [INFO] [stderr] | [INFO] [stderr] 741 | sample_entries: &[SylspEntry] [INFO] [stderr] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sample_entries` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: struct `ReassignmentStats` is never constructed [INFO] [stderr] --> src/contain.rs:285:8 [INFO] [stderr] | [INFO] [stderr] 285 | struct ReassignmentStats { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: function `ani_from_lambda` is never used [INFO] [stderr] --> src/contain.rs:1122:4 [INFO] [stderr] | [INFO] [stderr] 1122 | fn ani_from_lambda(lambda: f64, k: f64, full_covs: &[u32]) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `extract_genome_id` is never used [INFO] [stderr] --> src/contain.rs:2113:4 [INFO] [stderr] | [INFO] [stderr] 2113 | fn extract_genome_id(file_path: &str) -> String { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `read_genome_mapping` is never used [INFO] [stderr] --> src/contain.rs:2317:4 [INFO] [stderr] | [INFO] [stderr] 2317 | fn read_genome_mapping(db_path: &str) -> Result> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `memory_stats::memory_stats` [INFO] [stderr] --> src/contain.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | use memory_stats::memory_stats; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `meta2bmap` (lib) generated 9 warnings (run `cargo fix --lib -p meta2bmap` to apply 5 suggestions) [INFO] [stderr] warning: `meta2bmap` (lib test) generated 8 warnings (7 duplicates) (run `cargo fix --lib -p meta2bmap --tests` to apply 1 suggestion) [INFO] [stderr] warning: struct `QueryArgs` is never constructed [INFO] [stderr] --> src/cmdline.rs:356:12 [INFO] [stderr] | [INFO] [stderr] 356 | pub struct QueryArgs { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: struct `GenomeSketchInspect` is never constructed [INFO] [stderr] --> src/extract.rs:955:12 [INFO] [stderr] | [INFO] [stderr] 955 | pub struct GenomeSketchInspect { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: struct `DatabaseSketch` is never constructed [INFO] [stderr] --> src/extract.rs:974:12 [INFO] [stderr] | [INFO] [stderr] 974 | pub struct DatabaseSketch { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: type alias `Hash` is never used [INFO] [stderr] --> src/sketch.rs:20:10 [INFO] [stderr] | [INFO] [stderr] 20 | pub type Hash = u64; [INFO] [stderr] | ^^^^ [INFO] [stderr] [INFO] [stderr] warning: field `query_tags` is never read [INFO] [stderr] --> src/contain.rs:120:9 [INFO] [stderr] | [INFO] [stderr] 105 | pub struct QueryResult { [INFO] [stderr] | ----------- field in this struct [INFO] [stderr] ... [INFO] [stderr] 120 | pub query_tags: usize, [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `QueryResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stderr] [INFO] [stderr] warning: field `file_path` is never read [INFO] [stderr] --> src/contain.rs:130:9 [INFO] [stderr] | [INFO] [stderr] 127 | pub struct GenomeProfileResult { [INFO] [stderr] | ------------------- field in this struct [INFO] [stderr] ... [INFO] [stderr] 130 | pub file_path: String, // 新增字段,存储文件路径 [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `GenomeProfileResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stderr] [INFO] [stderr] warning: struct `ReassignmentStats` is never constructed [INFO] [stderr] --> src/contain.rs:285:8 [INFO] [stderr] | [INFO] [stderr] 285 | struct ReassignmentStats { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `query_single_file` is never used [INFO] [stderr] --> src/contain.rs:2035:8 [INFO] [stderr] | [INFO] [stderr] 2035 | pub fn query_single_file(sample_path: &str, db_path: &str, min_ani: f64, mismatch: usize, min_tags_genome: usize) -> Result src/constants.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub const DEFAULT_FPR: f64 = 0.0001; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `hash_string` is never used [INFO] [stderr] --> src/constants.rs:25:8 [INFO] [stderr] | [INFO] [stderr] 25 | pub fn hash_string(s: &str) -> Hash { [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `meta2bmap` (bin "meta2bmap" test) generated 17 warnings (7 duplicates) [INFO] [stderr] warning: unused dependency `env_logger` [INFO] [stderr] --> Cargo.toml:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | env_logger = "0.9" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `env_logger` [INFO] [stderr] warning: unused dependency `glob` [INFO] [stderr] --> Cargo.toml:8:1 [INFO] [stderr] | [INFO] [stderr] 8 | glob = "0.3" [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `glob` [INFO] [stderr] warning: unused dependency `itertools` [INFO] [stderr] --> Cargo.toml:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | itertools = "0.11.0" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `itertools` [INFO] [stderr] warning: unused dependency `serde_json` [INFO] [stderr] --> Cargo.toml:16:1 [INFO] [stderr] | [INFO] [stderr] 16 | serde_json = "1.0" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `serde_json` [INFO] [stderr] warning: unused dependency `serde_yaml` [INFO] [stderr] --> Cargo.toml:17:1 [INFO] [stderr] | [INFO] [stderr] 17 | serde_yaml = "0.9" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: consider removing the dependency on `serde_yaml` [INFO] [stderr] warning: `meta2bmap` (manifest) generated 5 warnings [INFO] [stderr] Finished `release` profile [optimized + debuginfo] target(s) in 0.43s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/release/build/meta2bmap/3c9842f1783d0816/out/meta2bmap-3c9842f1783d0816) [INFO] [stdout] [INFO] [stdout] running 32 tests [INFO] [stdout] test contain::tests::test_pooled_error_rate_recovers_e ... ok [INFO] [stdout] test contain::tests::test_anchor_confidence_spread_vs_clustered ... ok [INFO] [stdout] test contain::tests::test_sample_error_rate_override_paths ... ok [INFO] [stdout] test contain::tests::test_reassign_over_stripping_protection ... ok [INFO] [stdout] test extract::tests::test_ani_from_containment_one_mismatch ... ok [INFO] [stdout] test contain::tests::test_sequences_sketch_view ... ok [INFO] [stdout] test contain::tests::test_aggregate_positions_cumulative_offsets ... ok [INFO] [stdout] test contain::tests::test_lookup_tag_coverage_exact_and_mismatch ... ok [INFO] [stdout] test extract::tests::test_p_detect_one_mismatch ... ok [INFO] [stdout] test contain::tests::test_joint_ani_single_class_equals_sylph_pow ... ok [INFO] [stdout] test extract::tests::test_one_mismatch_canonical_hashes ... ok [INFO] [stdout] test contain::tests::test_enzyme_compat_guard ... ok [INFO] [stdout] test contain::tests::test_error_aware_inversion_recovers_true_ani ... ok [INFO] [stdout] test extract::tests::test_process_fasta_to_syldb_tag_seqs_optional ... ok [INFO] [stdout] test extract::tests::test_syldb_read_v1_fallback ... ok [INFO] [stdout] test extract::tests::test_syldb_write_read_roundtrip_v2 ... ok [INFO] [stdout] test sketch::tests::test_sketch_genome_sylph_faithful_keeps_repeated_kmers ... ok [INFO] [stdout] test sketch::tests::test_extract_kmers_simd_matches_scalar ... ok [INFO] [stdout] test contain::tests::test_aggregate_positions_invalidated_by_v1_contig ... ok [INFO] [stdout] test extract::tests::test_process_fasta_to_syldb_stores_positions ... ok [INFO] [stdout] test contain::tests::test_min_shared_tag_guard ... ok [INFO] [stdout] test contain::tests::test_genome_sketch_adapter_fields ... ok [INFO] [stdout] test extract::tests::test_canonical_neighbor_consistency ... ok [INFO] [stdout] test contain::tests::test_sketch_mode_rejects_mismatch ... ok [INFO] [stdout] test sketch::tests::test_extract_kmers_dispatch_matches_scalar ... ok [INFO] [stdout] test contain::tests::test_error_aware_inversion_e0_matches_old ... ok [INFO] [stdout] test extract::tests::test_multi_member_gzip_fasta_reads_all_members ... ok [INFO] [stdout] test contain::tests::test_calculate_statistics_mismatch_increases_shared ... ok [INFO] [stdout] test extract::tests::test_multi_member_gzip_fastq_reads_all_members ... ok [INFO] [stdout] test sketch::tests::test_sketch_genome_faithful_matches_default_without_repeats ... ok [INFO] [stdout] test contain::tests::test_estimate_read_error_rate_synthetic ... ok [INFO] [stdout] test extract::tests::test_single_pass_scan_matches_per_pattern ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 32 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/release/build/meta2bmap/55cb208770f0532c/out/meta2bmap-55cb208770f0532c) [INFO] [stdout] [INFO] [stdout] running 35 tests [INFO] [stdout] test contain::tests::test_anchor_confidence_spread_vs_clustered ... ok [INFO] [stdout] test contain::tests::test_error_aware_inversion_e0_matches_old ... ok [INFO] [stdout] test contain::tests::test_enzyme_compat_guard ... ok [INFO] [stdout] test contain::tests::test_error_aware_inversion_recovers_true_ani ... ok [INFO] [stdout] test contain::tests::test_joint_ani_single_class_equals_sylph_pow ... ok [INFO] [stdout] test contain::tests::test_min_shared_tag_guard ... ok [INFO] [stdout] test contain::tests::test_sample_error_rate_override_paths ... ok [INFO] [stdout] test contain::tests::test_sketch_mode_rejects_mismatch ... ok [INFO] [stdout] test contain::tests::test_reassign_over_stripping_protection ... ok [INFO] [stdout] test extract::tests::test_ani_from_containment_one_mismatch ... ok [INFO] [stdout] test contain::tests::test_genome_sketch_adapter_fields ... ok [INFO] [stdout] test contain::tests::test_calculate_statistics_mismatch_increases_shared ... ok [INFO] [stdout] test extract::tests::test_process_fasta_to_syldb_stores_positions ... ok [INFO] [stdout] test contain::tests::test_aggregate_positions_invalidated_by_v1_contig ... ok [INFO] [stdout] test extract::tests::test_syldb_read_v1_fallback ... ok [INFO] [stdout] test extract::tests::test_syldb_write_read_roundtrip_v2 ... ok [INFO] [stdout] test contain::tests::test_sequences_sketch_view ... ok [INFO] [stdout] test extract::tests::test_canonical_neighbor_consistency ... ok [INFO] [stdout] test extract::tests::test_process_fasta_to_syldb_tag_seqs_optional ... ok [INFO] [stdout] test contain::tests::test_pooled_error_rate_recovers_e ... ok [INFO] [stdout] test merge::tests::test_merge_roundtrip_preserves_entries ... ok [INFO] [stdout] test mark::tests::test_mark_unique_tags ... ok [INFO] [stdout] test extract::tests::test_p_detect_one_mismatch ... ok [INFO] [stdout] test contain::tests::test_lookup_tag_coverage_exact_and_mismatch ... ok [INFO] [stdout] test merge::tests::test_merge_rejects_mismatched_enzymes ... ok [INFO] [stdout] test contain::tests::test_aggregate_positions_cumulative_offsets ... ok [INFO] [stdout] test extract::tests::test_multi_member_gzip_fasta_reads_all_members ... ok [INFO] [stdout] test sketch::tests::test_extract_kmers_simd_matches_scalar ... ok [INFO] [stdout] test sketch::tests::test_sketch_genome_sylph_faithful_keeps_repeated_kmers ... ok [INFO] [stdout] test extract::tests::test_one_mismatch_canonical_hashes ... ok [INFO] [stdout] test sketch::tests::test_extract_kmers_dispatch_matches_scalar ... ok [INFO] [stdout] test extract::tests::test_multi_member_gzip_fastq_reads_all_members ... ok [INFO] [stdout] test sketch::tests::test_sketch_genome_faithful_matches_default_without_repeats ... ok [INFO] [stdout] test extract::tests::test_single_pass_scan_matches_per_pattern ... ok [INFO] [stdout] test contain::tests::test_estimate_read_error_rate_synthetic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 35 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s [INFO] [stdout] [INFO] [stderr] Doc-tests meta2bmap [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c", kill_on_drop: false }` [INFO] [stdout] 60302b37d4a0f533356affacf3854fee22b67ece194f2a1c7f334a02b603340c