[INFO] cloning repository https://github.com/AI4S-YB/fastqc-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AI4S-YB/fastqc-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2Ffastqc-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2Ffastqc-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a9df1e95dc1b69da8cef4dc04de08316aeac1922 [INFO] testing AI4S-YB/fastqc-rs against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2Ffastqc-rs" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/AI4S-YB/fastqc-rs [INFO] finished tweaking git repo https://github.com/AI4S-YB/fastqc-rs [INFO] tweaked toml for git repo https://github.com/AI4S-YB/fastqc-rs written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/AI4S-YB/fastqc-rs on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/AI4S-YB/fastqc-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95 [INFO] running `Command { std: "docker" "start" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.184 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling unicode-ident v1.0.24 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling zerocopy v0.8.48 [INFO] [stderr] Compiling simd-adler32 v0.3.9 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Compiling zlib-rs v0.6.3 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling hashbrown v0.16.1 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling bytemuck v1.25.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling subtle v2.6.1 [INFO] [stderr] Compiling bytes v1.11.1 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling bit-vec v0.9.1 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling indexmap v2.13.1 [INFO] [stderr] Compiling anstyle-parse v1.0.0 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling noodles-core v0.19.0 [INFO] [stderr] Compiling anstyle v1.0.14 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling powerfmt v0.2.0 [INFO] [stderr] Compiling crc-catalog v2.4.0 [INFO] [stderr] Compiling cc v1.2.59 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling zmij v1.0.21 [INFO] [stderr] Compiling bitflags v2.11.0 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling colorchoice v1.0.5 [INFO] [stderr] Compiling cpufeatures v0.2.17 [INFO] [stderr] Compiling anstyle-query v1.1.5 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.2 [INFO] [stderr] Compiling crypto-common v0.1.7 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling inout v0.1.4 [INFO] [stderr] Compiling deranged v0.5.8 [INFO] [stderr] Compiling anstream v1.0.0 [INFO] [stderr] Compiling crc v3.4.0 [INFO] [stderr] Compiling cipher v0.4.4 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling bumpalo v3.20.2 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling hmac v0.12.1 [INFO] [stderr] Compiling zip v2.4.2 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling time-core v0.1.8 [INFO] [stderr] Compiling log v0.4.29 [INFO] [stderr] Compiling clap_lex v1.1.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling num-conv v0.2.1 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling pbkdf2 v0.12.2 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling zopfli v0.8.3 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling lzma-rs v0.3.0 [INFO] [stderr] Compiling aes v0.8.4 [INFO] [stderr] Compiling sha1 v0.10.6 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling constant_time_eq v0.3.1 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling itoa v1.0.18 [INFO] [stderr] Compiling deflate64 v0.1.12 [INFO] [stderr] Compiling base64 v0.22.1 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2 v0.5.2 [INFO] [stderr] Compiling time v0.3.47 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling noodles-bgzf v0.46.0 [INFO] [stderr] Compiling noodles-csi v0.55.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling noodles-sam v0.84.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling zeroize_derive v1.4.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling clap_derive v4.6.0 [INFO] [stderr] Compiling zeroize v1.8.2 [INFO] [stderr] Compiling noodles-bam v0.88.0 [INFO] [stderr] Compiling clap v4.6.0 [INFO] [stderr] Compiling noodles v0.109.0 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling fastqc-rs v0.14.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `name` is never read [INFO] [stdout] --> src/modules/adapter_content.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 10 | struct Adapter { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] 11 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `obs_exp_positions` and `lowest_p_value` are never read [INFO] [stdout] --> src/modules/kmer_content.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 12 | struct Kmer { [INFO] [stdout] | ---- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 16 | obs_exp_positions: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] 17 | lowest_p_value: f32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `max_obs_exp` and `max_position` are never used [INFO] [stdout] --> src/modules/kmer_content.rs:41:8 [INFO] [stdout] | [INFO] [stdout] 20 | impl Kmer { [INFO] [stdout] | --------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 41 | fn max_obs_exp(&self) -> f32 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 48 | fn max_position(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `enriched_kmers` is never read [INFO] [stdout] --> src/modules/kmer_content.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 65 | pub struct KmerContent { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 72 | enriched_kmers: Vec, // indices into sorted_kmers [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `warn_threshold` and `error_threshold` are never read [INFO] [stdout] --> src/modules/sequence_length_distribution.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 8 | pub struct SequenceLengthDistribution { [INFO] [stdout] | -------------------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 11 | warn_threshold: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 12 | error_threshold: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: unused dependency `statrs` [INFO] [stderr] --> Cargo.toml:11:1 [INFO] [stderr] | [INFO] [stderr] 11 | statrs = "0.17" [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `statrs` [INFO] [stderr] warning: `fastqc-rs` (manifest) generated 1 warning [INFO] [stderr] Finished `release` profile [optimized] target(s) in 2m 05s [INFO] running `Command { std: "docker" "inspect" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling bitflags v2.11.0 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling linux-raw-sys v0.12.1 [INFO] [stderr] Compiling fastrand v2.4.1 [INFO] [stderr] Compiling diff v0.1.13 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling noodles-sam v0.84.0 [INFO] [stderr] Compiling pretty_assertions v1.4.1 [INFO] [stderr] Compiling tempfile v3.27.0 [INFO] [stderr] Compiling noodles-bam v0.88.0 [INFO] [stderr] Compiling noodles v0.109.0 [INFO] [stderr] Compiling fastqc-rs v0.14.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `name` is never read [INFO] [stdout] --> src/modules/adapter_content.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 10 | struct Adapter { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] 11 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `obs_exp_positions` and `lowest_p_value` are never read [INFO] [stdout] --> src/modules/kmer_content.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 12 | struct Kmer { [INFO] [stdout] | ---- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 16 | obs_exp_positions: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] 17 | lowest_p_value: f32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `max_obs_exp` and `max_position` are never used [INFO] [stdout] --> src/modules/kmer_content.rs:41:8 [INFO] [stdout] | [INFO] [stdout] 20 | impl Kmer { [INFO] [stdout] | --------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 41 | fn max_obs_exp(&self) -> f32 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 48 | fn max_position(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `enriched_kmers` is never read [INFO] [stdout] --> src/modules/kmer_content.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 65 | pub struct KmerContent { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 72 | enriched_kmers: Vec, // indices into sorted_kmers [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `warn_threshold` and `error_threshold` are never read [INFO] [stdout] --> src/modules/sequence_length_distribution.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 8 | pub struct SequenceLengthDistribution { [INFO] [stdout] | -------------------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 11 | warn_threshold: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 12 | error_threshold: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `name` is never read [INFO] [stdout] --> src/modules/adapter_content.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 10 | struct Adapter { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] 11 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `obs_exp_positions` and `lowest_p_value` are never read [INFO] [stdout] --> src/modules/kmer_content.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 12 | struct Kmer { [INFO] [stdout] | ---- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 16 | obs_exp_positions: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] 17 | lowest_p_value: f32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `max_obs_exp` and `max_position` are never used [INFO] [stdout] --> src/modules/kmer_content.rs:41:8 [INFO] [stdout] | [INFO] [stdout] 20 | impl Kmer { [INFO] [stdout] | --------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 41 | fn max_obs_exp(&self) -> f32 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 48 | fn max_position(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `enriched_kmers` is never read [INFO] [stdout] --> src/modules/kmer_content.rs:72:5 [INFO] [stdout] | [INFO] [stdout] 65 | pub struct KmerContent { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 72 | enriched_kmers: Vec, // indices into sorted_kmers [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `warn_threshold` and `error_threshold` are never read [INFO] [stdout] --> src/modules/sequence_length_distribution.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 8 | pub struct SequenceLengthDistribution { [INFO] [stdout] | -------------------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 11 | warn_threshold: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 12 | error_threshold: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: unused dependency `statrs` [INFO] [stderr] --> Cargo.toml:11:1 [INFO] [stderr] | [INFO] [stderr] 11 | statrs = "0.17" [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `statrs` [INFO] [stderr] warning: `fastqc-rs` (manifest) generated 1 warning [INFO] [stderr] Finished `release` profile [optimized] target(s) in 33.19s [INFO] running `Command { std: "docker" "inspect" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] warning: field `name` is never read [INFO] [stderr] --> src/modules/adapter_content.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 10 | struct Adapter { [INFO] [stderr] | ------- field in this struct [INFO] [stderr] 11 | name: String, [INFO] [stderr] | ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: fields `obs_exp_positions` and `lowest_p_value` are never read [INFO] [stderr] --> src/modules/kmer_content.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 12 | struct Kmer { [INFO] [stderr] | ---- fields in this struct [INFO] [stderr] ... [INFO] [stderr] 16 | obs_exp_positions: Vec, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] 17 | lowest_p_value: f32, [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: methods `max_obs_exp` and `max_position` are never used [INFO] [stderr] --> src/modules/kmer_content.rs:41:8 [INFO] [stderr] | [INFO] [stderr] 20 | impl Kmer { [INFO] [stderr] | --------- methods in this implementation [INFO] [stderr] ... [INFO] [stderr] 41 | fn max_obs_exp(&self) -> f32 { [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 48 | fn max_position(&self) -> usize { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field `enriched_kmers` is never read [INFO] [stderr] --> src/modules/kmer_content.rs:72:5 [INFO] [stderr] | [INFO] [stderr] 65 | pub struct KmerContent { [INFO] [stderr] | ----------- field in this struct [INFO] [stderr] ... [INFO] [stderr] 72 | enriched_kmers: Vec, // indices into sorted_kmers [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: fields `warn_threshold` and `error_threshold` are never read [INFO] [stderr] --> src/modules/sequence_length_distribution.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 8 | pub struct SequenceLengthDistribution { [INFO] [stderr] | -------------------------- fields in this struct [INFO] [stderr] ... [INFO] [stderr] 11 | warn_threshold: f64, [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] 12 | error_threshold: f64, [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `fastqc-rs` (lib) generated 5 warnings [INFO] [stderr] warning: `fastqc-rs` (lib test) generated 5 warnings (5 duplicates) [INFO] [stderr] warning: unused dependency `statrs` [INFO] [stderr] --> Cargo.toml:11:1 [INFO] [stderr] | [INFO] [stderr] 11 | statrs = "0.17" [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `statrs` [INFO] [stderr] warning: `fastqc-rs` (manifest) generated 1 warning [INFO] [stderr] Finished `release` profile [optimized] target(s) in 0.19s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/release/build/fastqc-rs/73456f53c28f76ec/out/fastqc_rs-73456f53c28f76ec) [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test graphs::base_group::tests::test_ungrouped ... ok [INFO] [stdout] test modules::gc_model::tests::test_gc_model_basic ... ok [INFO] [stdout] test graphs::base_group::tests::test_contains_value ... ok [INFO] [stdout] test modules::gc_model::tests::test_gc_model_sum ... ok [INFO] [stdout] test graphs::quality_count::tests::test_mean ... ok [INFO] [stdout] test graphs::base_group::tests::test_linear_long_reads ... ok [INFO] [stdout] test graphs::base_group::tests::test_linear_short_reads ... ok [INFO] [stdout] test graphs::quality_count::tests::test_percentile ... ok [INFO] [stdout] test graphs::quality_count::tests::test_add_value_and_counts ... ok [INFO] [stdout] test stats::normal_distribution::tests::test_normal_pdf ... ok [INFO] [stdout] test sequence::colorspace::tests::test_is_colorspace ... ok [INFO] [stdout] test graphs::base_group::tests::test_exponential ... ok [INFO] [stdout] test sequence::colorspace::tests::test_conversion ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/release/build/fastqc-rs/0c8e786fca2ce403/out/fastqc_rs-0c8e786fca2ce403) [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests fastqc_rs [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95", kill_on_drop: false }` [INFO] [stdout] f6605c616e168faac0856d45c12522b8ab7e82a6c9c17bdfc58baf074f061f95