[INFO] cloning repository https://github.com/alvgeppetto/loom
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/alvgeppetto/loom" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falvgeppetto%2Floom", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falvgeppetto%2Floom'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 62f111d1ff71bfb21bbf1aa1ffb8142c17571d0a
[INFO] testing alvgeppetto/loom against 1.97.0-beta.6+cargoflags=--release for beta-1.98-release-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falvgeppetto%2Floom" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-6-tc1/source/.cargo/config.toml
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[INFO] finished tweaking git repo https://github.com/alvgeppetto/loom
[INFO] tweaked toml for git repo https://github.com/alvgeppetto/loom written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/alvgeppetto/loom on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/alvgeppetto/loom already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "inspect" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
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[INFO] [stdout] warning: field `novelty_score` is never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | struct NovelRegion {
[INFO] [stdout]    |        ----------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 31 |     novelty_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `NovelRegion` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `total_guides` is never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:37:5
[INFO] [stdout]    |
[INFO] [stdout] 36 | struct PublishedDb {
[INFO] [stdout]    |        ----------- field in this struct
[INFO] [stdout] 37 |     total_guides: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PublishedDb` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `pmid`, `gene`, `wuhan_hu1_pos`, and `length` are never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 42 | struct PublishedGuide {
[INFO] [stdout]    |        -------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 48 |     pmid: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 49 |     #[serde(default)]
[INFO] [stdout] 50 |     gene: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 51 |     #[serde(default)]
[INFO] [stdout] 52 |     wuhan_hu1_pos: Option<i64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 53 |     length: usize,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PublishedGuide` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `EXCLUDE_KEYS` is never used
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:32:7
[INFO] [stdout]    |
[INFO] [stdout] 32 | const EXCLUDE_KEYS: &[&str] = &["human-grch38", "human", "refseq-viral"];
[INFO] [stdout]    |       ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `species`, `disease_ontology`, and `taxonomy` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 42 | struct OntologyPathogen {
[INFO] [stdout]    |        ---------------- fields in this struct
[INFO] [stdout] 43 |     species: Option<String>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 44 |     genes: Option<OntologyGenes>,
[INFO] [stdout] 45 |     disease_ontology: Option<DiseaseOntology>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 46 |     taxonomy: Option<Taxonomy>,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyPathogen` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `reference_accession` and `gene_count` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:51:5
[INFO] [stdout]    |
[INFO] [stdout] 50 | struct OntologyGenes {
[INFO] [stdout]    |        ------------- fields in this struct
[INFO] [stdout] 51 |     reference_accession: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 52 |     gene_count: Option<usize>,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyGenes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `gene_id` and `gene_type` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:60:5
[INFO] [stdout]    |
[INFO] [stdout] 57 | struct OntologyGene {
[INFO] [stdout]    |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 60 |     gene_id: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 61 |     #[serde(rename = "type")]
[INFO] [stdout] 62 |     gene_type: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyGene` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `synonyms` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 66 | struct DiseaseOntology {
[INFO] [stdout]    |        --------------- fields in this struct
[INFO] [stdout] 67 |     name: Option<String>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 68 |     synonyms: Option<Vec<String>>,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `DiseaseOntology` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `scientific_name` is never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 72 | struct Taxonomy {
[INFO] [stdout]    |        -------- field in this struct
[INFO] [stdout] 73 |     scientific_name: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Taxonomy` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 4m 39s
[INFO] running `Command { std: "docker" "inspect" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling errno v0.3.14
[INFO] [stderr]    Compiling tokio-macros v2.6.0
[INFO] [stderr]    Compiling mio v1.1.1
[INFO] [stdout] warning: field `novelty_score` is never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | struct NovelRegion {
[INFO] [stdout]    |        ----------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 31 |     novelty_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `NovelRegion` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling socket2 v0.6.2
[INFO] [stdout] warning: field `total_guides` is never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:37:5
[INFO] [stdout]    |
[INFO] [stdout] 36 | struct PublishedDb {
[INFO] [stdout]    |        ----------- field in this struct
[INFO] [stdout] 37 |     total_guides: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PublishedDb` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling pin-project-lite v0.2.16
[INFO] [stderr]    Compiling bytes v1.11.1
[INFO] [stdout] warning: fields `pmid`, `gene`, `wuhan_hu1_pos`, and `length` are never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 42 | struct PublishedGuide {
[INFO] [stdout]    |        -------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 48 |     pmid: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 49 |     #[serde(default)]
[INFO] [stdout] 50 |     gene: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 51 |     #[serde(default)]
[INFO] [stdout] 52 |     wuhan_hu1_pos: Option<i64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 53 |     length: usize,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PublishedGuide` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `EXCLUDE_KEYS` is never used
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:32:7
[INFO] [stdout]    |
[INFO] [stdout] 32 | const EXCLUDE_KEYS: &[&str] = &["human-grch38", "human", "refseq-viral"];
[INFO] [stdout]    |       ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `species`, `disease_ontology`, and `taxonomy` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 42 | struct OntologyPathogen {
[INFO] [stdout]    |        ---------------- fields in this struct
[INFO] [stdout] 43 |     species: Option<String>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 44 |     genes: Option<OntologyGenes>,
[INFO] [stdout] 45 |     disease_ontology: Option<DiseaseOntology>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 46 |     taxonomy: Option<Taxonomy>,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyPathogen` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `reference_accession` and `gene_count` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:51:5
[INFO] [stdout]    |
[INFO] [stdout] 50 | struct OntologyGenes {
[INFO] [stdout]    |        ------------- fields in this struct
[INFO] [stdout] 51 |     reference_accession: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 52 |     gene_count: Option<usize>,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyGenes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `gene_id` and `gene_type` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:60:5
[INFO] [stdout]    |
[INFO] [stdout] 57 | struct OntologyGene {
[INFO] [stdout]    |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 60 |     gene_id: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 61 |     #[serde(rename = "type")]
[INFO] [stdout] 62 |     gene_type: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyGene` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `synonyms` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 66 | struct DiseaseOntology {
[INFO] [stdout]    |        --------------- fields in this struct
[INFO] [stdout] 67 |     name: Option<String>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 68 |     synonyms: Option<Vec<String>>,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `DiseaseOntology` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `scientific_name` is never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 72 | struct Taxonomy {
[INFO] [stdout]    |        -------- field in this struct
[INFO] [stdout] 73 |     scientific_name: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Taxonomy` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling signal-hook-registry v1.4.8
[INFO] [stderr]    Compiling parking_lot v0.12.5
[INFO] [stderr]    Compiling tokio v1.49.0
[INFO] [stderr]    Compiling loom v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field `novelty_score` is never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | struct NovelRegion {
[INFO] [stdout]    |        ----------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 31 |     novelty_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `NovelRegion` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `total_guides` is never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:37:5
[INFO] [stdout]    |
[INFO] [stdout] 36 | struct PublishedDb {
[INFO] [stdout]    |        ----------- field in this struct
[INFO] [stdout] 37 |     total_guides: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PublishedDb` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `pmid`, `gene`, `wuhan_hu1_pos`, and `length` are never read
[INFO] [stdout]   --> src/dna/guide_novelty.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 42 | struct PublishedGuide {
[INFO] [stdout]    |        -------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 48 |     pmid: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 49 |     #[serde(default)]
[INFO] [stdout] 50 |     gene: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 51 |     #[serde(default)]
[INFO] [stdout] 52 |     wuhan_hu1_pos: Option<i64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 53 |     length: usize,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PublishedGuide` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `EXCLUDE_KEYS` is never used
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:32:7
[INFO] [stdout]    |
[INFO] [stdout] 32 | const EXCLUDE_KEYS: &[&str] = &["human-grch38", "human", "refseq-viral"];
[INFO] [stdout]    |       ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `species`, `disease_ontology`, and `taxonomy` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 42 | struct OntologyPathogen {
[INFO] [stdout]    |        ---------------- fields in this struct
[INFO] [stdout] 43 |     species: Option<String>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 44 |     genes: Option<OntologyGenes>,
[INFO] [stdout] 45 |     disease_ontology: Option<DiseaseOntology>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 46 |     taxonomy: Option<Taxonomy>,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyPathogen` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `reference_accession` and `gene_count` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:51:5
[INFO] [stdout]    |
[INFO] [stdout] 50 | struct OntologyGenes {
[INFO] [stdout]    |        ------------- fields in this struct
[INFO] [stdout] 51 |     reference_accession: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 52 |     gene_count: Option<usize>,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyGenes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `gene_id` and `gene_type` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:60:5
[INFO] [stdout]    |
[INFO] [stdout] 57 | struct OntologyGene {
[INFO] [stdout]    |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 60 |     gene_id: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 61 |     #[serde(rename = "type")]
[INFO] [stdout] 62 |     gene_type: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `OntologyGene` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `synonyms` are never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 66 | struct DiseaseOntology {
[INFO] [stdout]    |        --------------- fields in this struct
[INFO] [stdout] 67 |     name: Option<String>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 68 |     synonyms: Option<Vec<String>>,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `DiseaseOntology` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `scientific_name` is never read
[INFO] [stdout]   --> src/dna/pubmed_scan.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 72 | struct Taxonomy {
[INFO] [stdout]    |        -------- field in this struct
[INFO] [stdout] 73 |     scientific_name: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Taxonomy` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 1m 17s
[INFO] running `Command { std: "docker" "inspect" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: field `novelty_score` is never read
[INFO] [stderr]   --> src/dna/guide_novelty.rs:31:5
[INFO] [stderr]    |
[INFO] [stderr] 26 | struct NovelRegion {
[INFO] [stderr]    |        ----------- field in this struct
[INFO] [stderr] ...
[INFO] [stderr] 31 |     novelty_score: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `NovelRegion` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field `total_guides` is never read
[INFO] [stderr]   --> src/dna/guide_novelty.rs:37:5
[INFO] [stderr]    |
[INFO] [stderr] 36 | struct PublishedDb {
[INFO] [stderr]    |        ----------- field in this struct
[INFO] [stderr] 37 |     total_guides: usize,
[INFO] [stderr]    |     ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `PublishedDb` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: fields `pmid`, `gene`, `wuhan_hu1_pos`, and `length` are never read
[INFO] [stderr]   --> src/dna/guide_novelty.rs:48:5
[INFO] [stderr]    |
[INFO] [stderr] 42 | struct PublishedGuide {
[INFO] [stderr]    |        -------------- fields in this struct
[INFO] [stderr] ...
[INFO] [stderr] 48 |     pmid: String,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 49 |     #[serde(default)]
[INFO] [stderr] 50 |     gene: String,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 51 |     #[serde(default)]
[INFO] [stderr] 52 |     wuhan_hu1_pos: Option<i64>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^
[INFO] [stderr] 53 |     length: usize,
[INFO] [stderr]    |     ^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `PublishedGuide` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: constant `EXCLUDE_KEYS` is never used
[INFO] [stderr]   --> src/dna/pubmed_scan.rs:32:7
[INFO] [stderr]    |
[INFO] [stderr] 32 | const EXCLUDE_KEYS: &[&str] = &["human-grch38", "human", "refseq-viral"];
[INFO] [stderr]    |       ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: fields `species`, `disease_ontology`, and `taxonomy` are never read
[INFO] [stderr]   --> src/dna/pubmed_scan.rs:43:5
[INFO] [stderr]    |
[INFO] [stderr] 42 | struct OntologyPathogen {
[INFO] [stderr]    |        ---------------- fields in this struct
[INFO] [stderr] 43 |     species: Option<String>,
[INFO] [stderr]    |     ^^^^^^^
[INFO] [stderr] 44 |     genes: Option<OntologyGenes>,
[INFO] [stderr] 45 |     disease_ontology: Option<DiseaseOntology>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^
[INFO] [stderr] 46 |     taxonomy: Option<Taxonomy>,
[INFO] [stderr]    |     ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `OntologyPathogen` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: fields `reference_accession` and `gene_count` are never read
[INFO] [stderr]   --> src/dna/pubmed_scan.rs:51:5
[INFO] [stderr]    |
[INFO] [stderr] 50 | struct OntologyGenes {
[INFO] [stderr]    |        ------------- fields in this struct
[INFO] [stderr] 51 |     reference_accession: Option<String>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 52 |     gene_count: Option<usize>,
[INFO] [stderr]    |     ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `OntologyGenes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: fields `gene_id` and `gene_type` are never read
[INFO] [stderr]   --> src/dna/pubmed_scan.rs:60:5
[INFO] [stderr]    |
[INFO] [stderr] 57 | struct OntologyGene {
[INFO] [stderr]    |        ------------ fields in this struct
[INFO] [stderr] ...
[INFO] [stderr] 60 |     gene_id: Option<u64>,
[INFO] [stderr]    |     ^^^^^^^
[INFO] [stderr] 61 |     #[serde(rename = "type")]
[INFO] [stderr] 62 |     gene_type: Option<String>,
[INFO] [stderr]    |     ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `OntologyGene` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: fields `name` and `synonyms` are never read
[INFO] [stderr]   --> src/dna/pubmed_scan.rs:67:5
[INFO] [stderr]    |
[INFO] [stderr] 66 | struct DiseaseOntology {
[INFO] [stderr]    |        --------------- fields in this struct
[INFO] [stderr] 67 |     name: Option<String>,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 68 |     synonyms: Option<Vec<String>>,
[INFO] [stderr]    |     ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `DiseaseOntology` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: field `scientific_name` is never read
[INFO] [stderr]   --> src/dna/pubmed_scan.rs:73:5
[INFO] [stderr]    |
[INFO] [stderr] 72 | struct Taxonomy {
[INFO] [stderr]    |        -------- field in this struct
[INFO] [stderr] 73 |     scientific_name: Option<String>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `Taxonomy` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: `loom` (lib) generated 9 warnings
[INFO] [stderr] warning: `loom` (lib test) generated 9 warnings (9 duplicates)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.34s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/loom-4de8210bd02f1984)
[INFO] [stdout] 
[INFO] [stdout] running 61 tests
[INFO] [stdout] test dna::benchmark::tests::format_utc_timestamp_epoch ... ok
[INFO] [stdout] test dna::benchmark::tests::format_utc_timestamp_known_date ... ok
[INFO] [stdout] test dna::benchmark::tests::metrics_miss_retrieval ... ok
[INFO] [stdout] test dna::benchmark::tests::metrics_perfect_retrieval ... ok
[INFO] [stdout] test dna::benchmark::tests::plain_index_finds_exact_match ... ok
[INFO] [stdout] test dna::benchmark::tests::plain_index_returns_empty_for_no_match ... ok
[INFO] [stdout] test dna::benchmark::tests::count_occurrences_basic ... ok
[INFO] [stdout] test dna::compare::tests::compare_identical_reports_zero_delta ... ok
[INFO] [stdout] test dna::compare::tests::all_kpi_pass_gives_pass_verdict ... ok
[INFO] [stdout] test dna::compare::tests::high_latency_gives_fail_verdict ... ok
[INFO] [stdout] test dna::compare::tests::metric_delta_relative_zero_baseline ... ok
[INFO] [stdout] test dna::compare::tests::low_hit_at_k_gives_fail_verdict ... ok
[INFO] [stdout] test dna::corpus::tests::detect_gzip_fastq ... ok
[INFO] [stdout] test dna::corpus::tests::detect_plain_fasta ... ok
[INFO] [stdout] test dna::corpus::tests::parses_fastq_records_with_normalization ... ok
[INFO] [stdout] test dna::corpus::tests::detect_unknown_extension_errors ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fasta_basic ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fasta_filters_by_min_len ... ok
[INFO] [stdout] test dna::corpus::tests::detect_xz_fasta ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fasta_multiline_sequence ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fasta_ignores_semicolon_comments ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fastq_basic ... ok
[INFO] [stdout] test dna::corpus::tests::parses_fasta_records_with_normalization ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fastq_rejects_bad_header ... ok
[INFO] [stdout] test dna::compare::tests::render_markdown_contains_key_sections ... ok
[INFO] [stdout] test dna::compare::tests::large_regression_gives_fail_verdict ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fastq_rejects_missing_plus_separator ... ok
[INFO] [stdout] test dna::corpus::tests::stream_fastq_rejects_quality_length_mismatch ... ok
[INFO] [stdout] test dna::crispr_scan::tests::ambiguous_bases_reset_window ... ok
[INFO] [stdout] test dna::crispr_scan::tests::pam_ngg_detected ... ok
[INFO] [stdout] test dna::latency::tests::cold_is_first_sample_warm_excludes_it ... ok
[INFO] [stdout] test dna::crispr_scan::tests::pam_tttn_detected ... ok
[INFO] [stdout] test dna::crispr_scan::tests::scan_small_sequence ... ok
[INFO] [stdout] test dna::latency::tests::percentile_sorted_edge_cases ... ok
[INFO] [stdout] test dna::latency::tests::returns_none_for_empty_input ... ok
[INFO] [stdout] test dna::latency::tests::single_sample_populates_all_fields ... ok
[INFO] [stdout] test dna::latency::tests::time_call_returns_result_and_positive_elapsed ... ok
[INFO] [stdout] test dna::benchmark::tests::run_benchmark_on_synthetic_corpus ... ok
[INFO] [stdout] test dna::corpus::tests::stream_gz_fasta_round_trip ... ok
[INFO] [stdout] test dna::manifest::tests::builds_manifest_with_checksums_and_metadata ... ok
[INFO] [stdout] test dna::offtarget::tests::hamming_identical_is_zero ... ok
[INFO] [stdout] test dna::offtarget::tests::hamming_one_mismatch ... ok
[INFO] [stdout] test dna::manifest::tests::writes_manifest_json ... ok
[INFO] [stdout] test dna::offtarget::tests::encode_decode_round_trip ... ok
[INFO] [stdout] test dna::latency::tests::p95_and_p99_on_100_sample_range ... ok
[INFO] [stdout] test dna::offtarget::tests::no_duplicate_hits ... ok
[INFO] [stdout] test dna::offtarget::tests::one_mismatch_found ... ok
[INFO] [stdout] test dna::offtarget::tests::no_hit_beyond_threshold ... ok
[INFO] [stdout] test dna::offtarget::tests::rc_complement_and_reverse ... ok
[INFO] [stdout] test dna::tests::maps_iupac_ambiguity_codes_to_n ... ok
[INFO] [stdout] test dna::offtarget::tests::rc_strand_detected ... ok
[INFO] [stdout] test dna::tests::removes_non_sequence_characters ... ok
[INFO] [stdout] test wasm::tests::enrichment_falls_back_when_ontology_missing ... ok
[INFO] [stdout] test dna::tests::keeps_canonical_bases ... ok
[INFO] [stdout] test wasm::tests::malformed_ontology_payload_does_not_break_boot ... ok
[INFO] [stdout] test wasm::tests::enrichment_uses_embedded_ontology_terms ... ok
[INFO] [stdout] test wasm::tests::parses_ontology_and_returns_related_terms ... ok
[INFO] [stdout] test dna::tests::uppercases_and_maps_u_to_t ... ok
[INFO] [stdout] test dna::crispr_scan::tests::encode_decode_roundtrip ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/deps/loom-156c5f942bb9cb14)
[INFO] [stdout] test dna::offtarget::tests::exact_match_found ... ok
[INFO] [stdout] test dna::offtarget::tests::hamming_all_mismatch ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 61 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/encrypt_tests.rs (/opt/rustwide/target/release/deps/encrypt_tests-3e9c29eb00e2ce5c)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] test test_blind_index_correct_key_finds_terms ... ok
[INFO] [stdout] test test_encrypt_decrypt_roundtrip ... ok
[INFO] [stdout] test test_blind_flag ... ok
[INFO] [stdout] test test_blind_index_unkeyed_search_returns_zero ... ok
[INFO] [stdout] test test_blind_permutation_overhead_sanity ... FAILED
[INFO] [stdout] test test_decrypt_wrong_key_returns_error ... ok
[INFO] [stdout] test test_encrypted_file_magic ... ok
[INFO] [stdout] test test_encrypt_decrypt_roundtrip_password_api ... ok
[INFO] [stdout] test test_permuter_deterministic ... ok
[INFO] [stdout] test test_permuter_roundtrip ... ok
[INFO] [stdout] test test_search_after_decrypt ... ok
[INFO] [stdout] test test_permuter_different_keys_differ ... ok
[INFO] [stdout] test test_cli_search_encrypted_blind_index_with_key_succeeds ... ok
[INFO] [stdout] test test_encrypt_password_wrong_password_fails ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_blind_permutation_overhead_sanity stdout ----
[INFO] [stdout] Plain: 55.0ms  Blind: 92.0ms  Overhead: 67.3%
[INFO] [stdout] 
[INFO] [stdout] thread 'test_blind_permutation_overhead_sanity' (3321) panicked at tests/encrypt_tests.rs:368:9:
[INFO] [stdout] Blind index overhead too large: 67.3% (target < 5%, CI limit < 20%)
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x63176091cec9 - <<std[10d71ac2c42b111e]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6317608b986a - core[8fb95b77d25ab6c8]::fmt::write
[INFO] [stdout]    2:     0x631760923326 - <alloc[a7ee25936407c584]::vec::Vec<u8> as std[10d71ac2c42b111e]::io::Write>::write_fmt
[INFO] [stdout]    3:     0x6317608f57c6 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x631760914661 - std[10d71ac2c42b111e]::panicking::default_hook
[INFO] [stdout]    5:     0x631760914842 - std[10d71ac2c42b111e]::panicking::panic_with_hook
[INFO] [stdout]    6:     0x6317608f5882 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    7:     0x6317608ea769 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace::<std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    8:     0x6317608fa8ad - __rustc[3be9ba60078d4c86]::rust_begin_unwind
[INFO] [stdout]    9:     0x6317608b9f5c - core[8fb95b77d25ab6c8]::panicking::panic_fmt
[INFO] [stdout]   10:     0x6317608c7e87 - <encrypt_tests[5dc4c1afadc0eed2]::test_blind_permutation_overhead_sanity::{closure#0} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   11:     0x63176092680b - test[213991da798b1c03]::__rust_begin_short_backtrace::<core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>>
[INFO] [stdout]   12:     0x631760935051 - test[213991da798b1c03]::run_test::{closure#0}
[INFO] [stdout]   13:     0x63176092e7a4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace::<test[213991da798b1c03]::run_test::{closure#1}, ()>
[INFO] [stdout]   14:     0x631760939002 - <std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked<test[213991da798b1c03]::run_test::{closure#1}, ()>::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   15:     0x63176091bd54 - <std[10d71ac2c42b111e]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   16:     0x79dccc11a07a - <unknown>
[INFO] [stdout]   17:     0x79dccc1ad534 - clone
[INFO] [stdout]   18:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_blind_permutation_overhead_sanity
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 13 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.54s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test encrypt_tests`
[INFO] running `Command { std: "docker" "inspect" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf", kill_on_drop: false }`
[INFO] [stdout] 7eab141bc30e3a20140d6ab879e3d7a648c827680fca72dbd44901ad3da77baf
