[INFO] cloning repository https://github.com/sriram98v/Generalized-PD [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sriram98v/Generalized-PD" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2FGeneralized-PD", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2FGeneralized-PD'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 400b9400b1413382c4297ac7065137ed9d614f6f [INFO] testing sriram98v/Generalized-PD against 1.97.0-beta.6+cargoflags=--release for beta-1.98-release-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2FGeneralized-PD" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/sriram98v/Generalized-PD [INFO] finished tweaking git repo https://github.com/sriram98v/Generalized-PD [INFO] tweaked toml for git repo https://github.com/sriram98v/Generalized-PD written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/sriram98v/Generalized-PD on toolchain 1.97.0-beta.6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/sriram98v/Generalized-PD already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... 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windows_aarch64_msvc v0.52.5 [INFO] [stderr] Downloaded windows_x86_64_msvc v0.52.5 [INFO] [stderr] Downloaded windows_i686_gnu v0.52.5 [INFO] [stderr] Downloaded libc v0.2.155 [INFO] [stderr] Downloaded windows_x86_64_gnu v0.52.5 [INFO] [stderr] Downloaded windows_i686_msvc v0.52.5 [INFO] [stderr] Downloaded linux-raw-sys v0.4.14 [INFO] [stderr] Downloaded phylo v2.0.1 [INFO] [stderr] Downloaded exitcode v1.1.2 [INFO] [stderr] Downloaded console v0.15.8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8 [INFO] running `Command { std: "docker" "start" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Compiling anstyle v1.0.7 [INFO] [stderr] Compiling colorchoice v1.0.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.0 [INFO] [stderr] Compiling anstyle-query v1.1.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling unicode-width v0.1.13 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling clap_lex v0.7.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling anstream v0.6.14 [INFO] [stderr] Compiling testing_table v0.3.0 [INFO] [stderr] Compiling papergrid v0.17.0 [INFO] [stderr] Compiling vers-vecs v1.6.0 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling clap_builder v4.5.8 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling syn v2.0.99 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling indexmap v2.12.0 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling clap v4.5.8 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling tabled_derive v0.11.0 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling phylo v2.0.1 [INFO] [stderr] Compiling tabled v0.20.0 [INFO] [stderr] Compiling PD v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `beta` is never read [INFO] [stdout] --> src/pd.rs:282:5 [INFO] [stdout] | [INFO] [stdout] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 281 | tree: &'a SimpleRootedTree, [INFO] [stdout] 282 | beta: Vec>>, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: crate `PD` should have a snake case name [INFO] [stdout] | [INFO] [stdout] = help: convert the identifier to snake case: `pd` [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:15:8 [INFO] [stdout] | [INFO] [stdout] 15 | fn get_minPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD_node` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:20:8 [INFO] [stdout] | [INFO] [stdout] 20 | fn get_minPD_node( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_minPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:26:8 [INFO] [stdout] | [INFO] [stdout] 26 | fn get_norm_minPD( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | fn get_minPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:37:8 [INFO] [stdout] | [INFO] [stdout] 37 | fn get_norm_minPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_min_genPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:42:8 [INFO] [stdout] | [INFO] [stdout] 42 | fn get_min_genPD( [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_min_genPD_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:46:8 [INFO] [stdout] | [INFO] [stdout] 46 | fn get_min_genPD_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:50:8 [INFO] [stdout] | [INFO] [stdout] 50 | fn get_maxPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD_node` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:55:8 [INFO] [stdout] | [INFO] [stdout] 55 | fn get_maxPD_node( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_maxPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | fn get_norm_maxPD( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:66:8 [INFO] [stdout] | [INFO] [stdout] 66 | fn get_maxPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:71:8 [INFO] [stdout] | [INFO] [stdout] 71 | fn get_norm_maxPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_max_genPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | fn get_max_genPD( [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_max_genPD_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:80:8 [INFO] [stdout] | [INFO] [stdout] 80 | fn get_max_genPD_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_avgPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | fn get_avgPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `release` profile [optimized] target(s) in 52.34s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling divan-macros v0.1.14 [INFO] [stderr] Compiling regex-lite v0.1.6 [INFO] [stderr] Compiling condtype v1.3.0 [INFO] [stderr] Compiling terminal_size v0.3.0 [INFO] [stderr] Compiling clap_builder v4.5.8 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling rand_distr v0.5.1 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling clap v4.5.8 [INFO] [stderr] Compiling divan v0.1.14 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling phylo v2.0.1 [INFO] [stderr] Compiling PD v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `beta` is never read [INFO] [stdout] --> src/pd.rs:282:5 [INFO] [stdout] | [INFO] [stdout] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 281 | tree: &'a SimpleRootedTree, [INFO] [stdout] 282 | beta: Vec>>, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: crate `PD` should have a snake case name [INFO] [stdout] | [INFO] [stdout] = help: convert the identifier to snake case: `pd` [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:15:8 [INFO] [stdout] | [INFO] [stdout] 15 | fn get_minPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD_node` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:20:8 [INFO] [stdout] | [INFO] [stdout] 20 | fn get_minPD_node( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_minPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:26:8 [INFO] [stdout] | [INFO] [stdout] 26 | fn get_norm_minPD( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | fn get_minPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:37:8 [INFO] [stdout] | [INFO] [stdout] 37 | fn get_norm_minPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_min_genPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:42:8 [INFO] [stdout] | [INFO] [stdout] 42 | fn get_min_genPD( [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_min_genPD_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:46:8 [INFO] [stdout] | [INFO] [stdout] 46 | fn get_min_genPD_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:50:8 [INFO] [stdout] | [INFO] [stdout] 50 | fn get_maxPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD_node` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:55:8 [INFO] [stdout] | [INFO] [stdout] 55 | fn get_maxPD_node( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_maxPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | fn get_norm_maxPD( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:66:8 [INFO] [stdout] | [INFO] [stdout] 66 | fn get_maxPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:71:8 [INFO] [stdout] | [INFO] [stdout] 71 | fn get_norm_maxPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_max_genPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | fn get_max_genPD( [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_max_genPD_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:80:8 [INFO] [stdout] | [INFO] [stdout] 80 | fn get_max_genPD_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_avgPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | fn get_avgPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `beta` is never read [INFO] [stdout] --> src/pd.rs:282:5 [INFO] [stdout] | [INFO] [stdout] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 281 | tree: &'a SimpleRootedTree, [INFO] [stdout] 282 | beta: Vec>>, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:15:8 [INFO] [stdout] | [INFO] [stdout] 15 | fn get_minPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD_node` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:20:8 [INFO] [stdout] | [INFO] [stdout] 20 | fn get_minPD_node( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_minPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:26:8 [INFO] [stdout] | [INFO] [stdout] 26 | fn get_norm_minPD( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_minPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | fn get_minPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:37:8 [INFO] [stdout] | [INFO] [stdout] 37 | fn get_norm_minPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_min_genPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:42:8 [INFO] [stdout] | [INFO] [stdout] 42 | fn get_min_genPD( [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_min_genPD_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:46:8 [INFO] [stdout] | [INFO] [stdout] 46 | fn get_min_genPD_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:50:8 [INFO] [stdout] | [INFO] [stdout] 50 | fn get_maxPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD_node` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:55:8 [INFO] [stdout] | [INFO] [stdout] 55 | fn get_maxPD_node( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_maxPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:61:8 [INFO] [stdout] | [INFO] [stdout] 61 | fn get_norm_maxPD( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_maxPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:66:8 [INFO] [stdout] | [INFO] [stdout] 66 | fn get_maxPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:71:8 [INFO] [stdout] | [INFO] [stdout] 71 | fn get_norm_maxPD_taxa_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_max_genPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | fn get_max_genPD( [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_max_genPD_set` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:80:8 [INFO] [stdout] | [INFO] [stdout] 80 | fn get_max_genPD_set( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait method `get_avgPD` should have a snake case name [INFO] [stdout] --> src/pd/phylogenetic_diversity.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | fn get_avgPD( [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AvgNormalizedPD`, `TreePDMap`, `TreePD`, `binarize_tree`, `brute_force_avg_pd_global`, `brute_force_max_pd`, and `brute_force_min_pd` [INFO] [stdout] --> examples/distributions.rs:3:14 [INFO] [stdout] | [INFO] [stdout] 3 | ...::{brute_force_avg_pd_global, brute_force_max_pd, brute_force_min_pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ ^^^^^^^^^ ^^^^^^^^^^^^^^^ ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `collections::HashMap` [INFO] [stdout] --> examples/distributions.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use std::{collections::HashMap, error::Error}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AvgNormalizedPD` [INFO] [stdout] --> examples/tree-prop.rs:4:53 [INFO] [stdout] | [INFO] [stdout] 4 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `sync::Mutex` [INFO] [stdout] --> examples/cli.rs:1:42 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{collections::HashMap, env, fs, sync::Mutex}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ParallelProgressIterator` and `ProgressStyle` [INFO] [stdout] --> examples/cli.rs:2:17 [INFO] [stdout] | [INFO] [stdout] 2 | use indicatif::{ParallelProgressIterator, ProgressStyle}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AvgNormalizedPD` and `MinMaxNormalizedPD` [INFO] [stdout] --> examples/cli.rs:5:53 [INFO] [stdout] | [INFO] [stdout] 5 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::IteratorRandom` [INFO] [stdout] --> examples/cli.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rand::seq::IteratorRandom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `IntoParallelRefIterator` and `ParallelBridge` [INFO] [stdout] --> examples/cli.rs:7:19 [INFO] [stdout] | [INFO] [stdout] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Table` [INFO] [stdout] --> examples/cli.rs:11:22 [INFO] [stdout] | [INFO] [stdout] 11 | use tabled::{Tabled, Table}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ParallelIterator` [INFO] [stdout] --> examples/cli.rs:7:60 [INFO] [stdout] | [INFO] [stdout] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_taxa` [INFO] [stdout] --> examples/cli.rs:56:9 [INFO] [stdout] | [INFO] [stdout] 56 | let num_taxa = tree.num_taxa(); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_taxa` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf_node_ids` [INFO] [stdout] --> examples/cli.rs:60:9 [INFO] [stdout] | [INFO] [stdout] 60 | let leaf_node_ids = tree.get_leaf_ids().collect_vec(); [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_leaf_node_ids` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Normpd` is never constructed [INFO] [stdout] --> examples/cli.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | struct Normpd { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `AvgNormalizedPD` [INFO] [stdout] --> tests/main.rs:3:133 [INFO] [stdout] | [INFO] [stdout] 3 | ..._pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bf_min_norm_pd` [INFO] [stdout] --> tests/main.rs:59:9 [INFO] [stdout] | [INFO] [stdout] 59 | let bf_min_norm_pd = brute_force_min_pd(&tree); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_min_norm_pd` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bf_avg_norm_pd` [INFO] [stdout] --> tests/main.rs:60:9 [INFO] [stdout] | [INFO] [stdout] 60 | let bf_avg_norm_pd = brute_force_avg_pd_global(&tree); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_avg_norm_pd` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `release` profile [optimized] target(s) in 31.56s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] warning: field `beta` is never read [INFO] [stderr] --> src/pd.rs:282:5 [INFO] [stderr] | [INFO] [stderr] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> { [INFO] [stderr] | --------------- field in this struct [INFO] [stderr] 281 | tree: &'a SimpleRootedTree, [INFO] [stderr] 282 | beta: Vec>>, [INFO] [stderr] | ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: crate `PD` should have a snake case name [INFO] [stderr] | [INFO] [stderr] = help: convert the identifier to snake case: `pd` [INFO] [stderr] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: trait method `get_minPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:15:8 [INFO] [stderr] | [INFO] [stderr] 15 | fn get_minPD( [INFO] [stderr] | ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_minPD_node` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:20:8 [INFO] [stderr] | [INFO] [stderr] 20 | fn get_minPD_node( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_norm_minPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:26:8 [INFO] [stderr] | [INFO] [stderr] 26 | fn get_norm_minPD( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_minPD_taxa_set` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn get_minPD_taxa_set( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:37:8 [INFO] [stderr] | [INFO] [stderr] 37 | fn get_norm_minPD_taxa_set( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_min_genPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:42:8 [INFO] [stderr] | [INFO] [stderr] 42 | fn get_min_genPD( [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_min_genPD_set` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:46:8 [INFO] [stderr] | [INFO] [stderr] 46 | fn get_min_genPD_set( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_maxPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:50:8 [INFO] [stderr] | [INFO] [stderr] 50 | fn get_maxPD( [INFO] [stderr] | ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_maxPD_node` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:55:8 [INFO] [stderr] | [INFO] [stderr] 55 | fn get_maxPD_node( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_norm_maxPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:61:8 [INFO] [stderr] | [INFO] [stderr] 61 | fn get_norm_maxPD( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_maxPD_taxa_set` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:66:8 [INFO] [stderr] | [INFO] [stderr] 66 | fn get_maxPD_taxa_set( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:71:8 [INFO] [stderr] | [INFO] [stderr] 71 | fn get_norm_maxPD_taxa_set( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_max_genPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:76:8 [INFO] [stderr] | [INFO] [stderr] 76 | fn get_max_genPD( [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_max_genPD_set` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:80:8 [INFO] [stderr] | [INFO] [stderr] 80 | fn get_max_genPD_set( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_avgPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:84:8 [INFO] [stderr] | [INFO] [stderr] 84 | fn get_avgPD( [INFO] [stderr] | ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd` [INFO] [stderr] [INFO] [stderr] warning: trait method `get_minPD` should have a snake case name [INFO] [stderr] --> src/pd/phylogenetic_diversity.rs:15:8 [INFO] [stderr] | [INFO] [stderr] 15 | fn get_minPD( [INFO] [stderr] | ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `PD` (lib) generated 17 warnings [INFO] [stderr] warning: `PD` (lib test) generated 16 warnings (15 duplicates) [INFO] [stderr] warning: unused import: `AvgNormalizedPD` [INFO] [stderr] --> examples/tree-prop.rs:4:53 [INFO] [stderr] | [INFO] [stderr] 4 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD}; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `AvgNormalizedPD` [INFO] [stderr] --> tests/main.rs:3:133 [INFO] [stderr] | [INFO] [stderr] 3 | ..._pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD}; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `bf_min_norm_pd` [INFO] [stderr] --> tests/main.rs:59:9 [INFO] [stderr] | [INFO] [stderr] 59 | let bf_min_norm_pd = brute_force_min_pd(&tree); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_min_norm_pd` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `bf_avg_norm_pd` [INFO] [stderr] --> tests/main.rs:60:9 [INFO] [stderr] | [INFO] [stderr] 60 | let bf_avg_norm_pd = brute_force_avg_pd_global(&tree); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_avg_norm_pd` [INFO] [stderr] [INFO] [stderr] warning: unused imports: `AvgNormalizedPD`, `TreePDMap`, `TreePD`, `binarize_tree`, `brute_force_avg_pd_global`, `brute_force_max_pd`, and `brute_force_min_pd` [INFO] [stderr] --> examples/distributions.rs:3:14 [INFO] [stderr] | [INFO] [stderr] 3 | ...::{brute_force_avg_pd_global, brute_force_max_pd, brute_force_min_pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ ^^^^^^^^^ ^^^^^^^^^^^^^^^ ^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `collections::HashMap` [INFO] [stderr] --> examples/distributions.rs:6:11 [INFO] [stderr] | [INFO] [stderr] 6 | use std::{collections::HashMap, error::Error}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `sync::Mutex` [INFO] [stderr] --> examples/cli.rs:1:42 [INFO] [stderr] | [INFO] [stderr] 1 | use std::{collections::HashMap, env, fs, sync::Mutex}; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `ParallelProgressIterator` and `ProgressStyle` [INFO] [stderr] --> examples/cli.rs:2:17 [INFO] [stderr] | [INFO] [stderr] 2 | use indicatif::{ParallelProgressIterator, ProgressStyle}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `AvgNormalizedPD` and `MinMaxNormalizedPD` [INFO] [stderr] --> examples/cli.rs:5:53 [INFO] [stderr] | [INFO] [stderr] 5 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD}; [INFO] [stderr] | ^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rand::seq::IteratorRandom` [INFO] [stderr] --> examples/cli.rs:6:5 [INFO] [stderr] | [INFO] [stderr] 6 | use rand::seq::IteratorRandom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `IntoParallelRefIterator` and `ParallelBridge` [INFO] [stderr] --> examples/cli.rs:7:19 [INFO] [stderr] | [INFO] [stderr] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Table` [INFO] [stderr] --> examples/cli.rs:11:22 [INFO] [stderr] | [INFO] [stderr] 11 | use tabled::{Tabled, Table}; [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ParallelIterator` [INFO] [stderr] --> examples/cli.rs:7:60 [INFO] [stderr] | [INFO] [stderr] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `num_taxa` [INFO] [stderr] --> examples/cli.rs:56:9 [INFO] [stderr] | [INFO] [stderr] 56 | let num_taxa = tree.num_taxa(); [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_taxa` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf_node_ids` [INFO] [stderr] --> examples/cli.rs:60:9 [INFO] [stderr] | [INFO] [stderr] 60 | let leaf_node_ids = tree.get_leaf_ids().collect_vec(); [INFO] [stderr] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_leaf_node_ids` [INFO] [stderr] [INFO] [stderr] warning: struct `Normpd` is never constructed [INFO] [stderr] --> examples/cli.rs:14:8 [INFO] [stderr] | [INFO] [stderr] 14 | struct Normpd { [INFO] [stderr] | ^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `PD` (example "tree-prop") generated 1 warning (run `cargo fix --example "tree-prop" -p PD` to apply 1 suggestion) [INFO] [stderr] warning: `PD` (test "main") generated 3 warnings (run `cargo fix --test "main" -p PD` to apply 3 suggestions) [INFO] [stderr] warning: `PD` (example "distributions") generated 2 warnings (run `cargo fix --example "distributions" -p PD` to apply 2 suggestions) [INFO] [stderr] warning: `PD` (example "cli") generated 10 warnings (run `cargo fix --example "cli" -p PD` to apply 8 suggestions) [INFO] [stderr] Finished `release` profile [optimized] target(s) in 0.12s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/release/deps/PD-f29128c19079de3f) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/genpd.rs (/opt/rustwide/target/release/deps/genpd-65320285b8a238b0) [INFO] [stdout] running 0 tests [INFO] [stderr] Running tests/main.rs (/opt/rustwide/target/release/deps/main-b9b04edd3a7b0186) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test binarize ... ok [INFO] [stdout] test max_norm_pd_tree_a ... ok [INFO] [stdout] test random_tree ... ok [INFO] [stdout] test min_norm_pd_tree_a ... ok [INFO] [stdout] test vanilla ... ok [INFO] [stdout] test pd ... ok [INFO] [stdout] test normpd ... ok [INFO] [stdout] test print_testcases ... ok [INFO] [stdout] test max_norm_pd_matches_brute_force_random ... ok [INFO] [stdout] test min_norm_pd_matches_brute_force_random ... ok [INFO] [stderr] Doc-tests PD [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8", kill_on_drop: false }` [INFO] [stdout] bfb33ef28c32241ed6b2eed9c426525b20b4f05a003b43080bd4edca3b06eda8