[INFO] cloning repository https://github.com/logannye/hcp-dp
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/logannye/hcp-dp" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flogannye%2Fhcp-dp", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flogannye%2Fhcp-dp'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7f70e0bcb9da38498e13b66079b9c9e1b0a9468e
[INFO] testing logannye/hcp-dp against 1.98.0-beta.1 for beta-1.98-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flogannye%2Fhcp-dp" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/logannye/hcp-dp
[INFO] finished tweaking git repo https://github.com/logannye/hcp-dp
[INFO] tweaked toml for git repo https://github.com/logannye/hcp-dp written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/logannye/hcp-dp on toolchain 1.98.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/logannye/hcp-dp already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4
[INFO] running `Command { std: "docker" "start" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling redb v2.6.3
[INFO] [stderr]    Compiling clap_lex v0.7.6
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling hcp-dp v0.2.0-rc.1 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling clap_builder v4.5.51
[INFO] [stderr]    Compiling syn v2.0.109
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap v4.5.51
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.04s
[INFO] running `Command { std: "docker" "inspect" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling unarray v0.1.4
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling rand_xorshift v0.4.0
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling rusty-fork v0.3.1
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling hcp-dp v0.2.0-rc.1 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling proptest v1.9.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 36.33s
[INFO] running `Command { std: "docker" "inspect" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hcp_dp-6c9b10d401e6ed13)
[INFO] [stdout] 
[INFO] [stdout] running 50 tests
[INFO] [stdout] test batch::tests::error_records_use_the_oracle_version ... ok
[INFO] [stdout] test batch::tests::oversized_pair_runs_in_its_own_window ... ok
[INFO] [stdout] test batch::tests::unrecoverable_error_stops_jsonl_style_continuation ... ok
[INFO] [stdout] test blocks::tests::zero_length_block_is_empty ... ok
[INFO] [stdout] test blocks::tests::typical_block_len ... ok
[INFO] [stdout] test engine::tests::run_concatenates_without_duplicate_midpoint ... ok
[INFO] [stdout] test engine::tests::linear_space_constructor_uses_one_layer_blocks ... ok
[INFO] [stdout] test oracle::tests::canonical_cigar_uses_sam_orientation ... ok
[INFO] [stdout] test oracle::tests::comparison_accepts_distinct_optimal_records ... ok
[INFO] [stdout] test problems::edit_distance::tests::fixed_band_reports_none_when_too_small ... ok
[INFO] [stdout] test oracle::tests::solve_and_verify_edit_distance ... ok
[INFO] [stdout] test oracle::tests::optimality_limit_is_explicitly_inconclusive ... ok
[INFO] [stdout] test problems::edit_distance::tests::empty_source_reconstructs_insertions ... ok
[INFO] [stdout] test problems::edit_distance::tests::myers_u64_declines_long_patterns ... ok
[INFO] [stdout] test problems::edit_distance::tests::myers_u64_matches_linear_space_for_short_patterns ... ok
[INFO] [stdout] test problems::edit_distance::tests::kitten_sitting_distance_is_three ... ok
[INFO] [stdout] test oracle::tests::every_mode_round_trips_json_paf_and_sam ... ok
[INFO] [stdout] test problems::edit_distance::tests::myers_arbitrary_matches_u64_for_short_patterns ... ok
[INFO] [stdout] test problems::nw_affine::tests::empty_source_reconstructs_single_horizontal_gap ... ok
[INFO] [stdout] test problems::nw_affine::tests::affine_regression_path_realizes_score ... ok
[INFO] [stdout] test problems::nw_affine::tests::banded_affine_trace_matches_hcp_score ... ok
[INFO] [stdout] test problems::nw_affine::tests::banded_affine_trace_rejects_too_narrow_band ... ok
[INFO] [stdout] test oracle::tests::mutation_failures_name_the_broken_contract ... ok
[INFO] [stdout] test problems::edit_distance::tests::adaptive_banded_distance_matches_linear_space ... ok
[INFO] [stdout] test problems::edit_distance::tests::adaptive_banded_trace_matches_linear_space_and_scores_path ... ok
[INFO] [stdout] test problems::nw_align::tests::audit_regression_path_realizes_score ... ok
[INFO] [stdout] test problems::nw_align::tests::empty_source_reconstructs_gap_path ... ok
[INFO] [stdout] test problems::nw_align::tests::matrix_scoring_realizes_protein_score ... ok
[INFO] [stdout] test problems::semiglobal::tests::empty_query_has_zero_score ... ok
[INFO] [stdout] test engine::tests::zero_layers_still_reconstructs_leaf ... ok
[INFO] [stdout] test oracle::tests::cigar_parser_rejects_malformed_runs ... ok
[INFO] [stdout] test problems::smith_waterman::tests::classic_local_alignment_path_realizes_score ... ok
[INFO] [stdout] test scoring::tests::blosum62_known_scores ... ok
[INFO] [stdout] test problems::smith_waterman::tests::no_positive_alignment_returns_empty_path ... ok
[INFO] [stdout] test sequence_io::tests::malformed_fastq_quality_is_record_scoped ... ok
[INFO] [stdout] test sequence_io::tests::parses_wrapped_fasta_records_incrementally ... ok
[INFO] [stdout] test problems::semiglobal::tests::target_prefix_and_suffix_are_free ... ok
[INFO] [stdout] test sequence_io::tests::parses_multiline_fastq_and_discards_quality ... ok
[INFO] [stdout] test scoring::tests::parses_custom_matrix ... ok
[INFO] [stdout] test utils::tests::monotonic_non_decreasing ... ok
[INFO] [stdout] test sequence_io::tests::multi_member_gzip_is_decoded_incrementally ... ok
[INFO] [stdout] test utils::tests::returns_one_for_small_t ... ok
[INFO] [stdout] test utils::tests::sqrt_ceiling_behavior ... ok
[INFO] [stdout] test batch::tests::slow_first_job_is_ordered_and_window_bounded ... ok
[INFO] [stdout] test batch::tests::worker_panic_becomes_an_ordered_error_record ... ok
[INFO] [stdout] test problems::edit_distance::tests::myers_arbitrary_matches_linear_space_for_exhaustive_small_binary_strings ... ok
[INFO] [stdout] test engine::tests::with_block_size_panics_on_zero - should panic ... ok
[INFO] [stdout] test problems::edit_distance::tests::myers_arbitrary_matches_linear_space_for_long_patterns ... ok
[INFO] [stdout] test oracle::tests::all_modes_cross_check_exhaustive_small_binary_pairs ... ok
[INFO] [stdout] test sequence_store::tests::resolves_arbitrary_ids_and_rejects_duplicates ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 50 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.34s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/hcp_align.rs (/opt/rustwide/target/debug/deps/hcp_align-a5b36af684fb5d09)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_hcp_align.rs (/opt/rustwide/target/debug/deps/cli_hcp_align-355b060bb1f79a25)
[INFO] [stdout] 
[INFO] [stdout] running 24 tests
[INFO] [stdout] test fasta_batch_emits_jsonl ... ok
[INFO] [stdout] test legacy_top_level_mode_is_rejected ... ok
[INFO] [stdout] test score_scope_omits_traceback ... ok
[INFO] [stdout] test solve_edit_distance_emits_v2_oracle_record ... ok
[INFO] [stdout] test solve_recovers_after_a_record_scoped_fastq_error ... ok
[INFO] [stdout] test unequal_sequence_counts_emit_one_terminal_jsonl_error ... ok
[INFO] [stdout] test canonical_cigar_uses_sam_insertion_deletion_orientation ... ok
[INFO] [stdout] test version_reports_v02 ... ok
[INFO] [stdout] test every_supported_mode_cross_checks ... ok
[INFO] [stdout] test compare_accepts_equivalent_records ... ok
[INFO] [stdout] test integrity_mutation_is_a_named_invalid_check ... ok
[INFO] [stdout] test work_limit_is_exit_three_and_inconclusive ... ok
[INFO] [stdout] test paf_requires_explicit_problem ... ok
[INFO] [stdout] test external_sam_m_is_expanded_against_sources ... ok
[INFO] [stdout] test paf_round_trip_verifies ... ok
[INFO] [stdout] test verification_source_collections_do_not_require_positional_pairing ... ok
[INFO] [stdout] test json_verify_checks_exact_optimality ... ok
[INFO] [stdout] test jsonl_continues_with_an_ordered_error_record ... ok
[INFO] [stdout] test duplicate_and_missing_source_ids_are_errors ... ok
[INFO] [stdout] test mutated_objective_is_exit_one_with_specific_check ... ok
[INFO] [stdout] test non_jsonl_sidecar_enables_record_continuation ... ok
[INFO] [stdout] test sam_validates_sequence_and_soft_clipping ... ok
[INFO] [stdout] test sam_round_trip_verifies ... ok
[INFO] [stdout] test paf_rejects_corrupt_match_count_and_nm_tag ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 24 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.73s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/differential_corpus.rs (/opt/rustwide/target/debug/deps/differential_corpus-34435468d21ae5aa)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]    Doc-tests hcp_dp
[INFO] [stdout] test versioned_differential_corpus_matches_reference_objectives ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4", kill_on_drop: false }`
[INFO] [stdout] 79a7a4da6141b8438fbea944c5e70017fd03ea61191fa3521aca0eb90ae314d4
