[INFO] cloning repository https://github.com/mal2017/tcq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mal2017/tcq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Ftcq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Ftcq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8f1d6f947f2d7e33eec738ba82cec4875b4e4f4f
[INFO] testing mal2017/tcq against 1.98.0-beta.1 for beta-1.98-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Ftcq" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/mal2017/tcq
[INFO] finished tweaking git repo https://github.com/mal2017/tcq
[INFO] tweaked toml for git repo https://github.com/mal2017/tcq written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/mal2017/tcq on toolchain 1.98.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/mal2017/tcq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `tcq` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a
[INFO] running `Command { std: "docker" "start" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `tcq` (manifest) generated 1 warning
[INFO] [stderr]    Compiling libc v0.2.53
[INFO] [stderr]    Compiling cc v1.0.36
[INFO] [stderr]    Compiling autocfg v0.1.2
[INFO] [stderr]    Compiling memchr v2.2.0
[INFO] [stderr]    Compiling proc-macro2 v0.4.29
[INFO] [stderr]    Compiling syn v0.15.33
[INFO] [stderr]    Compiling serde v1.0.90
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]    Compiling rand_core v0.4.0
[INFO] [stderr]    Compiling lazy_static v1.3.0
[INFO] [stderr]    Compiling ucd-util v0.1.3
[INFO] [stderr]    Compiling regex v1.1.6
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling utf8-ranges v1.0.2
[INFO] [stderr]    Compiling cfg-if v0.1.7
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling regex-syntax v0.6.6
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling byteorder v1.3.1
[INFO] [stderr]    Compiling scopeguard v0.3.3
[INFO] [stderr]    Compiling backtrace v0.3.15
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling pkg-config v0.3.14
[INFO] [stderr]    Compiling quote v0.6.12
[INFO] [stderr]    Compiling aho-corasick v0.7.3
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling smallvec v0.6.9
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling backtrace-sys v0.1.28
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rustc-demangle v0.1.14
[INFO] [stderr]    Compiling humantime v1.2.0
[INFO] [stderr]    Compiling log v0.4.6
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling either v1.5.2
[INFO] [stderr]    Compiling termcolor v1.0.4
[INFO] [stderr]    Compiling parking_lot_core v0.4.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_jitter v0.1.3
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling bitflags v1.0.4
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling stable_deref_trait v1.1.1
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling bindgen v0.49.0
[INFO] [stderr]    Compiling owning_ref v0.4.0
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]    Compiling which v2.0.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling hashbrown v0.1.8
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling serde_derive v1.0.90
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling ryu v0.2.7
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling env_logger v0.6.1
[INFO] [stderr]    Compiling lock_api v0.1.5
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling unicode-normalization v0.1.8
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling num-integer v0.1.39
[INFO] [stderr]    Compiling parking_lot v0.7.1
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling csv-core v0.1.5
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling clicolors-control v1.0.0
[INFO] [stderr]    Compiling termios v0.3.1
[INFO] [stderr]    Compiling itoa v0.4.3
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]    Compiling percent-encoding v1.0.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ndarray v0.11.2
[INFO] [stderr]    Compiling console v0.7.5
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling url v1.7.2
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling number_prefix v0.2.8
[INFO] [stderr]    Compiling num-complex v0.1.43
[INFO] [stderr]    Compiling bitflags v0.9.1
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling fnv v1.0.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling indicatif v0.11.0
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling csv v1.0.7
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling rust-htslib v0.22.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=6a93aa473077c08aa52be0c2a89f1ee9d1c27609#6a93aa47)
[INFO] [stderr] error: failed to run custom build command for `rust-htslib v0.22.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=6a93aa473077c08aa52be0c2a89f1ee9d1c27609#6a93aa47)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-htslib-1319d3d1026bb72a/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   OPT_LEVEL = Some("0")
[INFO] [stderr]   TARGET = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   HOST = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   CC_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CC_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CC = None
[INFO] [stderr]   CC = None
[INFO] [stderr]   CFLAGS_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CFLAGS_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CFLAGS = None
[INFO] [stderr]   CFLAGS = None
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   DEBUG = Some("true")
[INFO] [stderr]   echo '/* Default config.h generated by Makefile */' > config.h
[INFO] [stderr]   echo '#define HAVE_LIBBZ2 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_LIBLZMA 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_LZMA_H 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_FSEEKO 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_DRAND48 1' >> config.h
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o kfunc.o kfunc.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o knetfile.o knetfile.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o kstring.o kstring.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o bcf_sr_sort.o bcf_sr_sort.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o bgzf.o bgzf.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o errmod.o errmod.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o faidx.o faidx.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o hfile.o hfile.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o hfile_net.o hfile_net.c
[INFO] [stderr]   echo '#define HTS_VERSION ""' > version.h
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o hts.o hts.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o hts_os.o hts_os.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o md5.o md5.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o multipart.o multipart.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o probaln.o probaln.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o realn.o realn.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o regidx.o regidx.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o sam.o sam.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o synced_bcf_reader.o synced_bcf_reader.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o vcf_sweep.o vcf_sweep.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o tbx.o tbx.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o textutils.o textutils.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o thread_pool.o thread_pool.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o vcf.o vcf.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o vcfutils.o vcfutils.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_codecs.o cram/cram_codecs.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_decode.o cram/cram_decode.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_encode.o cram/cram_encode.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_external.o cram/cram_external.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_index.o cram/cram_index.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_io.o cram/cram_io.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_samtools.o cram/cram_samtools.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/cram_stats.o cram/cram_stats.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/files.o cram/files.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/mFILE.o cram/mFILE.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/open_trace_file.o cram/open_trace_file.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/pooled_alloc.o cram/pooled_alloc.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/rANS_static.o cram/rANS_static.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/sam_header.o cram/sam_header.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include -I.  -c -o cram/string_alloc.o cram/string_alloc.c
[INFO] [stderr]   ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o
[INFO] [stderr]   ranlib libhts.a
[INFO] [stderr]   running: "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/opt/rustwide/target/debug/build/bzip2-sys-eda6524341154809/out/include" "-o" "/opt/rustwide/target/debug/build/rust-htslib-e4fa7d95bc4c4584/out/wrapper.o" "-c" "wrapper.c"
[INFO] [stderr]   exit status: 0
[INFO] [stderr]   AR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   AR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_AR = None
[INFO] [stderr]   AR = None
[INFO] [stderr]   running: "ar" "crs" "/opt/rustwide/target/debug/build/rust-htslib-e4fa7d95bc4c4584/out/libwrapper.a" "/opt/rustwide/target/debug/build/rust-htslib-e4fa7d95bc4c4584/out/wrapper.o"
[INFO] [stderr]   exit status: 0
[INFO] [stderr]   cargo:rustc-link-lib=static=wrapper
[INFO] [stderr]   cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/rust-htslib-e4fa7d95bc4c4584/out
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   fatal: No names found, cannot describe anything.
[INFO] [stderr]   fatal: No names found, cannot describe anything.
[INFO] [stderr]   hts.c: In function 'hts_idx_init':
[INFO] [stderr]   hts.c:1386:59: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int' changes value from 'idx->z.last_bin = 4294967295' to '-1' [-Woverflow]
[INFO] [stderr]    1386 |     idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu;
[INFO] [stderr]         |                                                           ^~~
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (1974) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-0.4.29/src/fallback.rs:594:9:
[INFO] [stderr]   "htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5)" is not a valid Ident
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5e149762f331 - std[73adb7dc35730857]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5e149762f331 - std[73adb7dc35730857]::backtrace_rs::backtrace::trace_unsynchronized::<std[73adb7dc35730857]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5e149762f331 - std[73adb7dc35730857]::sys::backtrace::_print_fmt
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/sys/backtrace.rs:74:9
[INFO] [stderr]      3:     0x5e149762f331 - <<std[73adb7dc35730857]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[6883ba1bc0fe4ed1]::fmt::Display>::fmt
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/sys/backtrace.rs:44:26
[INFO] [stderr]      4:     0x5e149764614a - <core[6883ba1bc0fe4ed1]::fmt::rt::Argument>::fmt
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x5e149764614a - core[6883ba1bc0fe4ed1]::fmt::write
[INFO] [stderr]      6:     0x5e14976355bc - std[73adb7dc35730857]::io::default_write_fmt::<std[73adb7dc35730857]::sys::stdio::unix::Stderr>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/io/mod.rs:626:11
[INFO] [stderr]      7:     0x5e14976355bc - <std[73adb7dc35730857]::sys::stdio::unix::Stderr as std[73adb7dc35730857]::io::Write>::write_fmt
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/io/mod.rs:1730:13
[INFO] [stderr]      8:     0x5e149760d946 - <std[73adb7dc35730857]::sys::backtrace::BacktraceLock>::print
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/sys/backtrace.rs:47:9
[INFO] [stderr]      9:     0x5e149760d946 - std[73adb7dc35730857]::panicking::default_hook::{closure#0}
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:292:27
[INFO] [stderr]     10:     0x5e1497628191 - std[73adb7dc35730857]::panicking::default_hook
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:319:9
[INFO] [stderr]     11:     0x5e14976284f2 - <alloc[55a36b64bcbf2c0d]::boxed::Box<dyn for<'a, 'b> core[6883ba1bc0fe4ed1]::ops::function::Fn<(&'a std[73adb7dc35730857]::panic::PanicHookInfo<'b>,), Output = ()> + core[6883ba1bc0fe4ed1]::marker::Send + core[6883ba1bc0fe4ed1]::marker::Sync> as core[6883ba1bc0fe4ed1]::ops::function::Fn<(&std[73adb7dc35730857]::panic::PanicHookInfo,)>>::call
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/alloc/src/boxed.rs:2333:9
[INFO] [stderr]     12:     0x5e14976284f2 - std[73adb7dc35730857]::panicking::panic_with_hook
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:823:13
[INFO] [stderr]     13:     0x5e149760d9f2 - std[73adb7dc35730857]::panicking::panic_handler::{closure#0}
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:688:13
[INFO] [stderr]     14:     0x5e14976050f9 - std[73adb7dc35730857]::sys::backtrace::__rust_end_short_backtrace::<std[73adb7dc35730857]::panicking::panic_handler::{closure#0}, !>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/sys/backtrace.rs:182:18
[INFO] [stderr]     15:     0x5e149760e2ed - __rustc[a7b7b02e776dd976]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:679:5
[INFO] [stderr]     16:     0x5e14976469fc - core[6883ba1bc0fe4ed1]::panicking::panic_fmt
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/core/src/panicking.rs:80:14
[INFO] [stderr]     17:     0x5e149750424b - proc_macro2[685dff3811ddccd]::fallback::validate_ident
[INFO] [stderr]     18:     0x5e1497500d61 - <proc_macro2[685dff3811ddccd]::fallback::Ident>::_new
[INFO] [stderr]     19:     0x5e1497500d1f - <proc_macro2[685dff3811ddccd]::fallback::Ident>::new
[INFO] [stderr]     20:     0x5e149750b168 - <proc_macro2[685dff3811ddccd]::imp::Ident>::new
[INFO] [stderr]     21:     0x5e149750f6c8 - <proc_macro2[685dff3811ddccd]::Ident>::new
[INFO] [stderr]     22:     0x5e14973ac67f - <bindgen[aecc84538c2e867c]::ir::context::BindgenContext>::rust_ident_raw::<alloc[55a36b64bcbf2c0d]::borrow::Cow<str>>
[INFO] [stderr]     23:     0x5e14973abfe0 - <bindgen[aecc84538c2e867c]::ir::context::BindgenContext>::rust_ident::<&alloc[55a36b64bcbf2c0d]::string::String>
[INFO] [stderr]     24:     0x5e149729fc07 - <bindgen[aecc84538c2e867c]::ir::comp::CompInfo as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     25:     0x5e1497362b36 - <bindgen[aecc84538c2e867c]::ir::ty::Type as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     26:     0x5e14972b753e - <bindgen[aecc84538c2e867c]::ir::item::Item as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     27:     0x5e14972a8234 - <bindgen[aecc84538c2e867c]::ir::comp::CompInfo as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     28:     0x5e1497362b36 - <bindgen[aecc84538c2e867c]::ir::ty::Type as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     29:     0x5e14972b753e - <bindgen[aecc84538c2e867c]::ir::item::Item as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     30:     0x5e1497398e9d - <bindgen[aecc84538c2e867c]::ir::module::Module as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen::{closure#0}
[INFO] [stderr]     31:     0x5e149732651b - <bindgen[aecc84538c2e867c]::ir::module::Module as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     32:     0x5e14972b7519 - <bindgen[aecc84538c2e867c]::ir::item::Item as bindgen[aecc84538c2e867c]::codegen::CodeGenerator>::codegen
[INFO] [stderr]     33:     0x5e14973988cb - bindgen[aecc84538c2e867c]::codegen::codegen::{closure#0}
[INFO] [stderr]     34:     0x5e14973ad908 - <bindgen[aecc84538c2e867c]::ir::context::BindgenContext>::gen::<bindgen[aecc84538c2e867c]::codegen::codegen::{closure#0}, alloc[55a36b64bcbf2c0d]::vec::Vec<proc_macro2[685dff3811ddccd]::TokenStream>>
[INFO] [stderr]     35:     0x5e14973a437d - bindgen[aecc84538c2e867c]::codegen::codegen
[INFO] [stderr]     36:     0x5e149738a717 - <bindgen[aecc84538c2e867c]::Bindings>::generate
[INFO] [stderr]     37:     0x5e1497387833 - <bindgen[aecc84538c2e867c]::Builder>::generate
[INFO] [stderr]     38:     0x5e149723e6f5 - build_script_build[8430191a1e4b059a]::main
[INFO] [stderr]     39:     0x5e14972401d3 - <fn() as core[6883ba1bc0fe4ed1]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]     40:     0x5e149723cfc6 - std[73adb7dc35730857]::sys::backtrace::__rust_begin_short_backtrace::<fn(), ()>
[INFO] [stderr]     41:     0x5e149723d099 - std[73adb7dc35730857]::rt::lang_start::<()>::{closure#0}
[INFO] [stderr]     42:     0x5e14976274a7 - <&dyn core[6883ba1bc0fe4ed1]::ops::function::Fn<(), Output = i32> + core[6883ba1bc0fe4ed1]::panic::unwind_safe::RefUnwindSafe + core[6883ba1bc0fe4ed1]::marker::Sync as core[6883ba1bc0fe4ed1]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     43:     0x5e14976274a7 - std[73adb7dc35730857]::panicking::catch_unwind::do_call::<&dyn core[6883ba1bc0fe4ed1]::ops::function::Fn<(), Output = i32> + core[6883ba1bc0fe4ed1]::panic::unwind_safe::RefUnwindSafe + core[6883ba1bc0fe4ed1]::marker::Sync, i32>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:576:43
[INFO] [stderr]     44:     0x5e14976274a7 - std[73adb7dc35730857]::panicking::catch_unwind::<i32, &dyn core[6883ba1bc0fe4ed1]::ops::function::Fn<(), Output = i32> + core[6883ba1bc0fe4ed1]::panic::unwind_safe::RefUnwindSafe + core[6883ba1bc0fe4ed1]::marker::Sync>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:544:19
[INFO] [stderr]     45:     0x5e14976274a7 - std[73adb7dc35730857]::panic::catch_unwind::<&dyn core[6883ba1bc0fe4ed1]::ops::function::Fn<(), Output = i32> + core[6883ba1bc0fe4ed1]::panic::unwind_safe::RefUnwindSafe + core[6883ba1bc0fe4ed1]::marker::Sync, i32>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panic.rs:359:14
[INFO] [stderr]     46:     0x5e14976274a7 - std[73adb7dc35730857]::rt::lang_start_internal::{closure#0}
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/rt.rs:175:24
[INFO] [stderr]     47:     0x5e14976274a7 - std[73adb7dc35730857]::panicking::catch_unwind::do_call::<std[73adb7dc35730857]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:576:43
[INFO] [stderr]     48:     0x5e14976274a7 - std[73adb7dc35730857]::panicking::catch_unwind::<isize, std[73adb7dc35730857]::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panicking.rs:544:19
[INFO] [stderr]     49:     0x5e14976274a7 - std[73adb7dc35730857]::panic::catch_unwind::<std[73adb7dc35730857]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/panic.rs:359:14
[INFO] [stderr]     50:     0x5e14976274a7 - std[73adb7dc35730857]::rt::lang_start_internal
[INFO] [stderr]                                  at /rustc/6b3fa26749ab40e159b2dd5cf577acaaf5902772/library/std/src/rt.rs:171:5
[INFO] [stderr]     51:     0x5e149723cfb1 - std[73adb7dc35730857]::rt::lang_start::<()>
[INFO] [stderr]     52:     0x5e1497240395 - main
[INFO] [stderr]     53:     0x7155b96cf1ca - <unknown>
[INFO] [stderr]     54:     0x7155b96cf28b - __libc_start_main
[INFO] [stderr]     55:     0x5e149723b5a5 - _start
[INFO] [stderr]     56:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a", kill_on_drop: false }`
[INFO] [stdout] 5b13b2035a6fb7f2d5d69cc825b39304e3346b76da761efd47181f28d8ca680a
