[INFO] cloning repository https://github.com/madhavajay/samtools-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/madhavajay/samtools-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmadhavajay%2Fsamtools-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmadhavajay%2Fsamtools-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] e0a5a5d9ed60efa2f514fbca8a8b6f1659f4c3a9 [INFO] testing madhavajay/samtools-rs against 1.97.0-beta.6 for beta-1.98-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmadhavajay%2Fsamtools-rs" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/madhavajay/samtools-rs [INFO] finished tweaking git repo https://github.com/madhavajay/samtools-rs [INFO] tweaked toml for git repo https://github.com/madhavajay/samtools-rs written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/madhavajay/samtools-rs on toolchain 1.97.0-beta.6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/madhavajay/samtools-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/madhavajay/htslib-rs.git` [INFO] [stderr] Updating git submodule `https://github.com/madhavajay/htslib.git` [INFO] [stderr] Updating git submodule `https://github.com/samtools/htscodecs.git` [INFO] [stderr] Updating git submodule `https://github.com/madhavajay/noodles.git` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded crypto-common v0.2.1 [INFO] [stderr] Downloaded terminal_size v0.4.4 [INFO] [stderr] Downloaded md-5 v0.11.0 [INFO] [stderr] Downloaded lexical-write-integer v1.0.6 [INFO] [stderr] Downloaded hybrid-array v0.4.12 [INFO] [stderr] Downloaded block-buffer v0.12.0 [INFO] [stderr] Downloaded bzip2 v0.6.1 [INFO] [stderr] Downloaded lexical-write-float v1.0.6 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.6 [INFO] [stderr] Downloaded libbz2-rs-sys v0.2.4 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded reqwest v0.13.3 [INFO] [stderr] Downloaded zlib-rs v0.6.3 [INFO] [stderr] Downloaded lexical-parse-float v1.0.6 [INFO] [stderr] Downloaded lzma-rust2 v0.16.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512 [INFO] running `Command { std: "docker" "start" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling bytes v1.11.1 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling typenum v1.20.0 [INFO] [stderr] Compiling libc v0.2.186 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling futures-core v0.3.32 [INFO] [stderr] Compiling pin-project-lite v0.2.17 [INFO] [stderr] Compiling zlib-rs v0.6.3 [INFO] [stderr] Compiling writeable v0.6.3 [INFO] [stderr] Compiling bitflags v2.11.1 [INFO] [stderr] Compiling itoa v1.0.18 [INFO] [stderr] Compiling litemap v0.8.2 [INFO] [stderr] Compiling icu_normalizer_data v2.2.0 [INFO] [stderr] Compiling icu_properties_data v2.2.0 [INFO] [stderr] Compiling percent-encoding v2.3.2 [INFO] [stderr] Compiling zerofrom-derive v0.1.7 [INFO] [stderr] Compiling yoke-derive v0.8.2 [INFO] [stderr] Compiling zerovec-derive v0.11.3 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling hashbrown v0.17.1 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling bit-vec v0.9.1 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling httparse v1.10.1 [INFO] [stderr] Compiling futures-task v0.3.32 [INFO] [stderr] Compiling slab v0.4.12 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling futures-channel v0.3.32 [INFO] [stderr] Compiling futures-util v0.3.32 [INFO] [stderr] Compiling sync_wrapper v1.0.2 [INFO] [stderr] Compiling atomic-waker v1.1.2 [INFO] [stderr] Compiling tower-layer v0.3.3 [INFO] [stderr] Compiling ipnet v2.12.0 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling tracing-core v0.1.36 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling http v1.4.0 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling ryu v1.0.23 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling indexmap v2.14.0 [INFO] [stderr] Compiling const-oid v0.10.2 [INFO] [stderr] Compiling tracing v0.1.44 [INFO] [stderr] Compiling noodles-core v0.20.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling zerofrom v0.1.8 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Compiling hybrid-array v0.4.12 [INFO] [stderr] Compiling futures-sink v0.3.32 [INFO] [stderr] Compiling yoke v0.8.2 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling log v0.4.29 [INFO] [stderr] Compiling linux-raw-sys v0.12.1 [INFO] [stderr] Compiling libbz2-rs-sys v0.2.4 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling zerovec v0.11.6 [INFO] [stderr] Compiling zerotrie v0.2.4 [INFO] [stderr] Compiling noodles-fastq v0.23.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling anstyle v1.0.14 [INFO] [stderr] Compiling socket2 v0.6.3 [INFO] [stderr] Compiling mio v1.2.0 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling crypto-common v0.1.7 [INFO] [stderr] Compiling bzip2 v0.6.1 [INFO] [stderr] Compiling clap_lex v1.1.0 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling http-body v1.0.1 [INFO] [stderr] Compiling crypto-common v0.2.1 [INFO] [stderr] Compiling block-buffer v0.12.0 [INFO] [stderr] Compiling sha2 v0.10.9 [INFO] [stderr] Compiling http-body-util v0.1.3 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling tinystr v0.8.3 [INFO] [stderr] Compiling potential_utf v0.1.5 [INFO] [stderr] Compiling anyhow v1.0.102 [INFO] [stderr] Compiling icu_locale_core v2.2.0 [INFO] [stderr] Compiling icu_collections v2.2.0 [INFO] [stderr] Compiling tokio v1.52.3 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling lzma-rust2 v0.16.2 [INFO] [stderr] Compiling terminal_size v0.4.4 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling digest v0.11.3 [INFO] [stderr] Compiling md-5 v0.11.0 [INFO] [stderr] Compiling icu_provider v2.2.0 [INFO] [stderr] Compiling icu_normalizer v2.2.0 [INFO] [stderr] Compiling icu_properties v2.2.0 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling noodles-bgzf v0.47.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling noodles-csi v0.56.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling noodles-fasta v0.61.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling idna_adapter v1.2.2 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling noodles-sam v0.85.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling noodles-tabix v0.62.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling url v2.5.8 [INFO] [stderr] Compiling clap v4.6.1 [INFO] [stderr] Compiling noodles-vcf v0.88.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling tower v0.5.3 [INFO] [stderr] Compiling hyper v1.9.0 [INFO] [stderr] Compiling tokio-util v0.7.18 [INFO] [stderr] Compiling noodles-bam v0.89.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling tower-http v0.6.10 [INFO] [stderr] Compiling noodles-bcf v0.86.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling noodles-cram v0.93.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling hyper-util v0.1.20 [INFO] [stderr] Compiling reqwest v0.13.3 [INFO] [stderr] Compiling noodles-refget v0.10.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling noodles v0.110.0 (https://github.com/madhavajay/noodles.git?branch=madhava%2Fbioscript#5868f00a) [INFO] [stderr] Compiling htslib-rs v0.1.0 (https://github.com/madhavajay/htslib-rs.git?branch=main#03bf5378) [INFO] [stderr] Compiling samtools-rs v0.0.1 (/opt/rustwide/workdir/crates/samtools-rs) [INFO] [stderr] Compiling samtools-rs-cli v0.0.1 (/opt/rustwide/workdir/crates/samtools-rs-cli) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 23s [INFO] running `Command { std: "docker" "inspect" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling samtools-rs v0.0.1 (/opt/rustwide/workdir/crates/samtools-rs) [INFO] [stderr] Compiling samtools-rs-cli v0.0.1 (/opt/rustwide/workdir/crates/samtools-rs-cli) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 27.91s [INFO] running `Command { std: "docker" "inspect" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.34s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/samtools_rs-2301201d1f4c58db) [INFO] [stdout] [INFO] [stdout] running 127 tests [INFO] [stdout] test aux_list::tests::rejects_malformed_tags ... ok [INFO] [stdout] test aux_list::tests::parses_comma_separated_tags ... ok [INFO] [stdout] test bam_flag::tests::flag_to_str_basic ... ok [INFO] [stdout] test bam_flag::tests::str_to_flag_names ... ok [INFO] [stdout] test bam_flag::tests::str_to_flag_numeric ... ok [INFO] [stdout] test bedidx::tests::indexes_sorted_intervals_and_overlap_queries ... ok [INFO] [stdout] test bam_flag::tests::str_to_flag_invalid ... ok [INFO] [stdout] test bedidx::tests::parses_bed_interval_and_region_string ... ok [INFO] [stdout] test bedidx::tests::parses_two_column_point_as_one_based ... ok [INFO] [stdout] test bedidx::tests::skips_comments_metadata_and_invalid_intervals ... ok [INFO] [stdout] test commands::ampliconstats::tests::aggregate_tcoord_merges_nearby_same_status_into_most_frequent_site ... ok [INFO] [stdout] test commands::bedcov::tests::writes_bedcov_header_from_bed_field_count ... ok [INFO] [stdout] test commands::bedcov::tests::writes_bedcov_header_preserves_empty_fourth_column ... ok [INFO] [stdout] test commands::bedcov::tests::writes_bedcov_header_with_depth_and_count_columns ... ok [INFO] [stdout] test commands::cram_size::method::tests::rans_nx16_flag_byte ... ok [INFO] [stdout] test commands::cram_size::method::tests::gzip_level_from_xfl_byte ... ok [INFO] [stdout] test commands::bedcov::tests::deletion_and_refskip_bases_are_counted_unless_j_is_set ... ok [INFO] [stdout] test commands::bedcov::tests::writes_bedcov_header_with_read_count_columns ... ok [INFO] [stdout] test commands::cram_size::method::tests::rans4x8_order_byte ... ok [INFO] [stdout] test commands::consensus::bayes::tests::accel_tables_and_helpers_match_upstream ... ok [INFO] [stdout] test commands::consensus::bayes::tests::likelihoods_match_upstream_formulas ... ok [INFO] [stdout] test commands::consensus::bayes::tests::gap5_call_basic_homozygous_and_het ... ok [INFO] [stdout] test commands::bedcov::tests::flag_mask_controls_duplicate_record_filtering ... ok [INFO] [stdout] test commands::cram_size::method::tests::bzip2_level_from_header_digit ... ok [INFO] [stdout] test commands::bedcov::tests::writes_bedcov_header_from_existing_bed_header ... ok [INFO] [stdout] test aux_list::tests::collapses_duplicates ... ok [INFO] [stdout] test commands::fixmate::tests::rejects_missing_sanitize_value ... ok [INFO] [stdout] test commands::consensus::bayes::tests::priors_match_upstream_consensus_init ... ok [INFO] [stdout] test commands::fixmate::tests::parses_sanitize_option_without_treating_value_as_input ... ok [INFO] [stdout] test commands::fixmate::tests::rejects_invalid_sanitize_value ... ok [INFO] [stdout] test commands::head::tests::gzip_sam_stdin_is_decoded_before_head_processing ... ok [INFO] [stdout] test commands::cram_size::method::tests::tables_have_comp_max_entries_and_anchor_chars ... ok [INFO] [stdout] test commands::faidx::tests::faidx_local_threads_use_bgzf_worker_output_path ... ok [INFO] [stdout] test commands::head::tests::stdin_sam_head_limits_headers_and_records ... ok [INFO] [stdout] test commands::idxstats::tests::write_counts_matches_idxstats_text_shape ... ok [INFO] [stdout] test commands::markdup::tests::estimate_library_size_subtracts_optical_pairs ... ok [INFO] [stdout] test commands::markdup::tests::markdup_stats_text_uses_upstream_field_names ... ok [INFO] [stdout] test commands::head::tests::stdin_sam_head_emits_all_headers_only_by_default ... ok [INFO] [stdout] test commands::merge::tests::reconcile_merge_headers_attach_rg_uses_filename_stem ... ok [INFO] [stdout] test commands::merge::tests::remap_record_rg_pg_drops_unknown_tags_once ... ok [INFO] [stdout] test commands::merge::tests::reconcile_merge_headers_unions_sq_and_preserves_input_header_text ... ok [INFO] [stdout] test commands::idxstats::tests::slow_counts_separates_mapped_unmapped_and_no_coordinate ... ok [INFO] [stdout] test commands::faidx::tests::faidx_global_threads_feed_bgzf_output_path ... ok [INFO] [stdout] test commands::merge::tests::reconcile_merge_headers_remaps_colliding_rg_pg_header_fields ... ok [INFO] [stdout] test commands::merge::tests::remap_record_rg_pg_force_rg_appends_filename_rg ... ok [INFO] [stdout] test commands::merge::tests::remap_record_rg_pg_translates_known_rg_pg_tags ... ok [INFO] [stdout] test commands::faidx::tests::fqidx_threads_use_bgzf_worker_output_path ... ok [INFO] [stdout] test commands::samples::tests::custom_index_stdin_requires_tab_pair ... ok [INFO] [stderr] Usage: samtools split [options] [INFO] [stdout] test commands::samples::tests::custom_index_argv_pairs_first_half_with_second_half ... ok [INFO] [stderr] Options: [INFO] [stdout] test commands::split::tests::header_for_split_output_filters_read_groups ... ok [INFO] [stderr] -f STR output filename template (default: %*_%!.%.) [INFO] [stdout] test commands::reset::tests::reset_sam_reader_supports_stdin_style_input ... ok [INFO] [stderr] -u FILE write records with unknown @RG/tag to FILE [INFO] [stdout] test commands::reset::tests::reset_bam_reader_supports_stdin_style_input ... ok [INFO] [stderr] -h FILE use alternate SAM header for -u output [INFO] [stdout] test commands::reheader::tests::reheader_sam_input_writes_sam_with_replacement_header ... ok [INFO] [stderr] -d TAG split by aux TAG instead of @RG [INFO] [stdout] test commands::split::tests::record_split_tag_value_formats_string_and_integer_tags ... ok [INFO] [stderr] -M N maximum number of outputs created by -d [INFO] [stdout] test commands::split::tests::render_template_matches_upstream_split_format_cases ... ok [INFO] [stderr] -p N pad the %# index to N digits [INFO] [stdout] test commands::split::tests::render_template_rejects_bad_percent_escapes ... ok [INFO] [stderr] --output-fmt sam|bam|cram [INFO] [stdout] test commands::view::tests::parses_output_fmt_option_version_and_embed_ref ... ok [INFO] [stderr] --no-PG do not add a @PG line [INFO] [stdout] test commands::split::tests::split_parse_args_handles_help_and_early_errors ... ok [INFO] [stderr] --write-index [INFO] [stdout] test commands::view::tests::simple_region_single_position_spans_to_reference_end ... ok [INFO] [stderr] Usage: samtools split [options] [INFO] [stderr] Options: [INFO] [stderr] -f STR output filename template (default: %*_%!.%.) [INFO] [stdout] test commands::targetcut::tests::targetcut_parses_attached_scoring_options ... ok [INFO] [stderr] -u FILE write records with unknown @RG/tag to FILE [INFO] [stderr] -h FILE use alternate SAM header for -u output [INFO] [stderr] -d TAG split by aux TAG instead of @RG [INFO] [stderr] -M N maximum number of outputs created by -d [INFO] [stderr] -p N pad the %# index to N digits [INFO] [stderr] --output-fmt sam|bam|cram [INFO] [stderr] --no-PG do not add a @PG line [INFO] [stderr] --write-index [INFO] [stderr] samtools split: TAG for -d must be exactly two characters [INFO] [stderr] samtools split: Invalid -M argument: "0" [INFO] [stderr] samtools split: unsupported output format "vcf" [INFO] [stderr] samtools split: option `--unknown` is not yet supported in samtools-rs split [INFO] [stdout] test commands::view::tests::stdin_bam_output_succeeds ... ok [INFO] [stdout] test commands::view::tests::stdin_bam_count_expr_succeeds ... ok [INFO] [stdout] test commands::view::tests::stdin_bam_bam_output_honors_mapq_filter ... ok [INFO] [stdout] test commands::view::tests::stdin_count_expr_succeeds ... ok [INFO] [stdout] test commands::view::tests::stdin_bam_sam_output_succeeds ... ok [INFO] [stdout] test commands::view::tests::stdin_bam_cram_output_honors_mapq_filter ... ok [INFO] [stdout] test commands::head::tests::stdin_bam_head_emits_raw_header_and_limited_records ... FAILED [INFO] [stdout] test commands::head::tests::stdin_cram_head_emits_raw_header_and_limited_records_with_reference ... FAILED [INFO] [stdout] test commands::head::tests::stdin_cram_records_require_reference ... FAILED [INFO] [stdout] test commands::markdup::tests::markdup_stats_match_upstream_fixture_counts ... FAILED [INFO] [stdout] test commands::reheader::tests::reheader_adds_pg_by_default ... FAILED [INFO] [stdout] test commands::reheader::tests::reheader_no_pg_suppresses_pg ... FAILED [INFO] [stdout] test io::tests::open_mode_infers_from_extension ... ok [INFO] [stdout] test io::tests::close_surfaces_flush_error ... ok [INFO] [stdout] test io::tests::open_mode_rejects_unknown_default ... ok [INFO] [stdout] test io::tests::open_mode_uses_explicit_format_first ... ok [INFO] [stdout] test commands::reheader::tests::reheader_command_filters_existing_header ... FAILED [INFO] [stdout] test io::tests::write_all_and_close_writes_to_vec ... ok [INFO] [stdout] test io::tests::opens_text_output_file ... ok [INFO] [stdout] test io::tests::open_mode_falls_back_to_default ... ok [INFO] [stdout] test logging::tests::applies_equals_verbosity_arg ... ok [INFO] [stdout] test commands::view::tests::stdin_cram_bam_output_honors_mapq_filter ... FAILED [INFO] [stdout] test logging::tests::applies_separate_verbosity_arg ... ok [INFO] [stdout] test logging::tests::rejects_invalid_verbosity_arg ... ok [INFO] [stdout] test commands::view::tests::stdin_cram_bam_output_succeeds ... FAILED [INFO] [stdout] test pg::tests::adds_single_pg_line_without_existing_programs ... ok [INFO] [stdout] test pg::tests::rejects_invalid_pg_field_text ... ok [INFO] [stdout] test pg::tests::stringify_argv_joins_with_spaces_and_replaces_tabs ... ok [INFO] [stdout] test rand48::tests::matches_glibc_seed_1_sequence ... ok [INFO] [stdout] test commands::view::tests::stdin_cram_count_expr_succeeds ... FAILED [INFO] [stdout] test reference::tests::reads_name_and_length_from_fai ... ok [INFO] [stdout] test sam_compat::tests::rewrites_scalar_int_synonyms_only ... ok [INFO] [stdout] test commands::view::tests::stdin_cram_cram_output_honors_mapq_filter ... FAILED [INFO] [stdout] test sam_global::tests::applies_top_level_verbosity ... ok [INFO] [stdout] test sam_global::tests::parses_and_strips_top_level_global_args ... ok [INFO] [stdout] test reference::tests::builds_index_and_matches_reference_dictionary ... ok [INFO] [stdout] test sam_compat::tests::handles_c_s_synonyms_and_missing_trailing_newline ... ok [INFO] [stdout] test reference::tests::derives_associated_fai_path ... ok [INFO] [stdout] test pg::tests::links_to_each_terminal_pg_chain_with_unique_ids ... ok [INFO] [stdout] test rand48::tests::gen_unique_id_bare_then_suffixed ... ok [INFO] [stdout] test sam_global::tests::rejects_invalid_threads ... ok [INFO] [stdout] test sam_global::tests::leaves_command_local_global_named_options_for_subcommands ... ok [INFO] [stdout] test sam_render::tests::line_without_floats_short_circuits ... ok [INFO] [stdout] test io::tests::detects_missing_input_as_invalid_input ... ok [INFO] [stdout] test sam_render::tests::non_float_fields_and_mandatory_columns_untouched ... ok [INFO] [stdout] test sam_render::tests::negative_large_exponent ... ok [INFO] [stdout] test sanitize::tests::all_and_off_reset_accumulated_flags ... ok [INFO] [stdout] test sam_global::tests::stores_and_returns_current_global_args ... ok [INFO] [stdout] test sanitize::tests::on_matches_upstream_parser_behavior ... ok [INFO] [stdout] test sanitize::tests::cigarx_implies_cigdup ... ok [INFO] [stdout] test sam_global::tests::rejects_missing_required_values ... ok [INFO] [stdout] test sam_render::tests::b_float_array_each_value_fixed ... ok [INFO] [stdout] test sanitize::tests::parses_empty_as_no_flags ... ok [INFO] [stdout] test sanitize::tests::parses_named_flags ... ok [INFO] [stdout] test sam_render::tests::scalar_float_uses_htslib_exponent ... ok [INFO] [stdout] test sam_render::tests::plain_float_in_window_is_unchanged ... ok [INFO] [stdout] test sanitize::tests::rejects_unknown_keyword ... ok [INFO] [stdout] test tmp_file::tests::persist_keeps_temp_file ... ok [INFO] [stdout] test tmp_file::tests::creates_unique_temp_file_with_extension ... ok [INFO] [stdout] test tmp_file::tests::drop_removes_temp_file ... ok [INFO] [stdout] test commands::view::tests::stdin_cram_uses_header_ur_reference_without_dash_t ... ok [INFO] [stdout] test commands::view::tests::stdin_cram_output_honors_mapq_filter ... ok [INFO] [stdout] test commands::phase::tests::phase_emits_phase_set_markers_and_evidence ... ok [INFO] [stdout] test commands::phase::tests::phase_split_bams_are_written ... ok [INFO] [stdout] test commands::phase::tests::phase_respects_min_base_quality ... ok [INFO] [stdout] test commands::targetcut::tests::targetcut_emits_long_supported_interval ... ok [INFO] [stdout] test commands::targetcut::tests::targetcut_respects_min_base_quality ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- commands::head::tests::stdin_bam_head_emits_raw_header_and_limited_records stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::head::tests::stdin_bam_head_emits_raw_header_and_limited_records' (2409) panicked at crates/samtools-rs/src/commands/head.rs:540:78: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d66611d - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d66611d - samtools_rs[f23a32924b5d1de8]::commands::head::tests::stdin_bam_head_emits_raw_header_and_limited_records [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/head.rs:540:78 [INFO] [stdout] 22: 0x60d28d65c717 - samtools_rs[f23a32924b5d1de8]::commands::head::tests::stdin_bam_head_emits_raw_header_and_limited_records::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/head.rs:539:61 [INFO] [stdout] 23: 0x60d28d7f39e6 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::head::tests::stdin_cram_head_emits_raw_header_and_limited_records_with_reference stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::head::tests::stdin_cram_head_emits_raw_header_and_limited_records_with_reference' (2410) panicked at crates/samtools-rs/src/commands/head.rs:558:64: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d666944 - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d666944 - samtools_rs[f23a32924b5d1de8]::commands::head::tests::stdin_cram_head_emits_raw_header_and_limited_records_with_reference [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/head.rs:558:64 [INFO] [stdout] 22: 0x60d28d65c747 - samtools_rs[f23a32924b5d1de8]::commands::head::tests::stdin_cram_head_emits_raw_header_and_limited_records_with_reference::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/head.rs:555:77 [INFO] [stdout] 23: 0x60d28d7f3a26 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::head::tests::stdin_cram_records_require_reference stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::head::tests::stdin_cram_records_require_reference' (2427) panicked at crates/samtools-rs/src/commands/head.rs:574:77: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d6653c7 - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d6653c7 - samtools_rs[f23a32924b5d1de8]::commands::head::tests::stdin_cram_records_require_reference [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/head.rs:574:77 [INFO] [stdout] 22: 0x60d28d65c657 - samtools_rs[f23a32924b5d1de8]::commands::head::tests::stdin_cram_records_require_reference::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/head.rs:573:46 [INFO] [stdout] 23: 0x60d28d7f38e6 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::markdup::tests::markdup_stats_match_upstream_fixture_counts stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::markdup::tests::markdup_stats_match_upstream_fixture_counts' (2435) panicked at crates/samtools-rs/src/commands/markdup.rs:2242:80: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d67a9d2 - >>>, std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d67a9d2 - samtools_rs[f23a32924b5d1de8]::commands::markdup::tests::markdup_stats_for_fixture [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/markdup.rs:2242:80 [INFO] [stdout] 22: 0x60d28d67d357 - samtools_rs[f23a32924b5d1de8]::commands::markdup::tests::markdup_stats_match_upstream_fixture_counts [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/markdup.rs:2397:17 [INFO] [stdout] 23: 0x60d28d65cf07 - samtools_rs[f23a32924b5d1de8]::commands::markdup::tests::markdup_stats_match_upstream_fixture_counts::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/markdup.rs:2262:53 [INFO] [stdout] 24: 0x60d28d7f4526 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 27: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 28: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 31: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 33: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 34: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 35: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 36: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 37: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 42: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 44: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 45: 0x7c8dc4741aa4 - [INFO] [stdout] 46: 0x7c8dc47cea64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::reheader::tests::reheader_adds_pg_by_default stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::reheader::tests::reheader_adds_pg_by_default' (2452) panicked at crates/samtools-rs/src/commands/reheader.rs:746:71: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Custom { kind: InvalidInput, error: "failed to detect format of \"/opt/rustwide/workdir/repos/samtools/test/checksum/chk1.bam\": failed to open input for format detection /opt/rustwide/workdir/repos/samtools/test/checksum/chk1.bam: No such file or directory (os error 2)" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d67f438 - >::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d67f438 - samtools_rs[f23a32924b5d1de8]::commands::reheader::tests::reheader_adds_pg_by_default [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/reheader.rs:746:71 [INFO] [stdout] 22: 0x60d28d65cff7 - samtools_rs[f23a32924b5d1de8]::commands::reheader::tests::reheader_adds_pg_by_default::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/reheader.rs:733:37 [INFO] [stdout] 23: 0x60d28d7f46e6 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::reheader::tests::reheader_no_pg_suppresses_pg stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::reheader::tests::reheader_no_pg_suppresses_pg' (2454) panicked at crates/samtools-rs/src/commands/reheader.rs:772:72: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Custom { kind: InvalidInput, error: "failed to detect format of \"/opt/rustwide/workdir/repos/samtools/test/checksum/chk1.bam\": failed to open input for format detection /opt/rustwide/workdir/repos/samtools/test/checksum/chk1.bam: No such file or directory (os error 2)" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d67fe19 - >::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d67fe19 - samtools_rs[f23a32924b5d1de8]::commands::reheader::tests::reheader_no_pg_suppresses_pg [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/reheader.rs:772:72 [INFO] [stdout] 22: 0x60d28d65d027 - samtools_rs[f23a32924b5d1de8]::commands::reheader::tests::reheader_no_pg_suppresses_pg::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/reheader.rs:759:38 [INFO] [stdout] 23: 0x60d28d7f4726 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::reheader::tests::reheader_command_filters_existing_header stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::reheader::tests::reheader_command_filters_existing_header' (2453) panicked at crates/samtools-rs/src/commands/reheader.rs:795:79: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Custom { kind: InvalidInput, error: "failed to detect format of \"/opt/rustwide/workdir/repos/samtools/test/checksum/chk1.bam\": failed to open input for format detection /opt/rustwide/workdir/repos/samtools/test/checksum/chk1.bam: No such file or directory (os error 2)" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d6806ba - >::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d6806ba - samtools_rs[f23a32924b5d1de8]::commands::reheader::tests::reheader_command_filters_existing_header [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/reheader.rs:795:79 [INFO] [stdout] 22: 0x60d28d65d057 - samtools_rs[f23a32924b5d1de8]::commands::reheader::tests::reheader_command_filters_existing_header::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/reheader.rs:781:50 [INFO] [stdout] 23: 0x60d28d7f4766 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::view::tests::stdin_cram_bam_output_honors_mapq_filter stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::view::tests::stdin_cram_bam_output_honors_mapq_filter' (2476) panicked at crates/samtools-rs/src/commands/view.rs:5412:63: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d66e003 - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d66e003 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_bam_output_honors_mapq_filter [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5412:63 [INFO] [stdout] 22: 0x60d28d65cb47 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_bam_output_honors_mapq_filter::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5409:50 [INFO] [stdout] 23: 0x60d28d7f3ca6 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::view::tests::stdin_cram_bam_output_succeeds stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::view::tests::stdin_cram_bam_output_succeeds' (2477) panicked at crates/samtools-rs/src/commands/view.rs:5350:63: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d66a483 - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d66a483 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_bam_output_succeeds [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5350:63 [INFO] [stdout] 22: 0x60d28d65c8f7 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_bam_output_succeeds::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5347:40 [INFO] [stdout] 23: 0x60d28d7f3b66 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::view::tests::stdin_cram_count_expr_succeeds stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::view::tests::stdin_cram_count_expr_succeeds' (2478) panicked at crates/samtools-rs/src/commands/view.rs:5326:63: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d66b0bb - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d66b0bb - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_count_expr_succeeds [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5326:63 [INFO] [stdout] 22: 0x60d28d65c927 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_count_expr_succeeds::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5323:40 [INFO] [stdout] 23: 0x60d28d7f3ba6 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- commands::view::tests::stdin_cram_cram_output_honors_mapq_filter stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'commands::view::tests::stdin_cram_cram_output_honors_mapq_filter' (2479) panicked at crates/samtools-rs/src/commands/view.rs:5434:63: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x60d28e0087c8 - std[10d71ac2c42b111e]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x60d28e0087c8 - std[10d71ac2c42b111e]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x60d28e0087c8 - <::print::DisplayBacktrace as core[8fb95b77d25ab6c8]::fmt::Display>::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x60d28e021baa - ::fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x60d28e021baa - core[8fb95b77d25ab6c8]::fmt::write [INFO] [stdout] 6: 0x60d28e00e362 - std[10d71ac2c42b111e]::io::default_write_fmt::> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:622:11 [INFO] [stdout] 7: 0x60d28e00e362 - as std[10d71ac2c42b111e]::io::Write>::write_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/io/mod.rs:1977:13 [INFO] [stdout] 8: 0x60d28dfe4e16 - ::print [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x60d28dfe4e16 - std[10d71ac2c42b111e]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x60d28dfffaa9 - std[10d71ac2c42b111e]::panicking::default_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x60d28d8f7f4c - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 12: 0x60d28d8f7f4c - test[213991da798b1c03]::test_main_inner::::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:155:21 [INFO] [stdout] 13: 0x60d28dfffc62 - core[8fb95b77d25ab6c8]::ops::function::Fn<(&'a std[10d71ac2c42b111e]::panic::PanicHookInfo<'b>,), Output = ()> + core[8fb95b77d25ab6c8]::marker::Sync + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::Fn<(&std[10d71ac2c42b111e]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2289:9 [INFO] [stdout] 14: 0x60d28dfffc62 - std[10d71ac2c42b111e]::panicking::panic_with_hook [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x60d28dfe4ed2 - std[10d71ac2c42b111e]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x60d28dfd9d09 - std[10d71ac2c42b111e]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x60d28dfe5c6d - __rustc[3be9ba60078d4c86]::rust_begin_unwind [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x60d28e0223ec - core[8fb95b77d25ab6c8]::panicking::panic_fmt [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x60d28e022162 - core[8fb95b77d25ab6c8]::result::unwrap_failed [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1867:5 [INFO] [stdout] 20: 0x60d28d66ebb6 - , std[10d71ac2c42b111e]::io::error::Error>>::unwrap [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/result.rs:1233:23 [INFO] [stdout] 21: 0x60d28d66ebb6 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_cram_output_honors_mapq_filter [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5434:63 [INFO] [stdout] 22: 0x60d28d65cb77 - samtools_rs[f23a32924b5d1de8]::commands::view::tests::stdin_cram_cram_output_honors_mapq_filter::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/crates/samtools-rs/src/commands/view.rs:5431:51 [INFO] [stdout] 23: 0x60d28d7f3ce6 - >::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x60d28d8eb02b - core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x60d28d8eb02b - test[213991da798b1c03]::__rust_begin_short_backtrace::, fn() -> core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:724:18 [INFO] [stdout] 26: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:74 [INFO] [stdout] 27: 0x60d28d8f88a5 - as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 28: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 29: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panicking::catch_unwind::, core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 30: 0x60d28d8f88a5 - std[10d71ac2c42b111e]::panic::catch_unwind::, core[8fb95b77d25ab6c8]::result::Result<(), alloc[a7ee25936407c584]::string::String>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test_in_process [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:747:27 [INFO] [stdout] 32: 0x60d28d8f88a5 - test[213991da798b1c03]::run_test::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:668:43 [INFO] [stdout] 33: 0x60d28d8f21b4 - test[213991da798b1c03]::run_test::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/test/src/lib.rs:698:41 [INFO] [stdout] 34: 0x60d28d8f21b4 - std[10d71ac2c42b111e]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 35: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:70:13 [INFO] [stdout] 36: 0x60d28d8fb922 - ::{closure#1}::{closure#0}> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/panic/unwind_safe.rs:275:9 [INFO] [stdout] 37: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:581:40 [INFO] [stdout] 38: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panicking::catch_unwind::<(), core[8fb95b77d25ab6c8]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panicking.rs:544:19 [INFO] [stdout] 39: 0x60d28d8fb922 - std[10d71ac2c42b111e]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x60d28d8fb922 - std[10d71ac2c42b111e]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/thread/lifecycle.rs:68:26 [INFO] [stdout] 41: 0x60d28d8fb922 - ::{closure#1} as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x60d28e00790f - + core[8fb95b77d25ab6c8]::marker::Send> as core[8fb95b77d25ab6c8]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/alloc/src/boxed.rs:2275:9 [INFO] [stdout] 43: 0x60d28e00790f - ::new::thread_start [INFO] [stdout] at /rustc/b2282dd5646a57d570fc86fbe8df0e8826665ef6/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 44: 0x7c8dc4741aa4 - [INFO] [stdout] 45: 0x7c8dc47cea64 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] commands::head::tests::stdin_bam_head_emits_raw_header_and_limited_records [INFO] [stdout] commands::head::tests::stdin_cram_head_emits_raw_header_and_limited_records_with_reference [INFO] [stdout] commands::head::tests::stdin_cram_records_require_reference [INFO] [stdout] commands::markdup::tests::markdup_stats_match_upstream_fixture_counts [INFO] [stdout] commands::reheader::tests::reheader_adds_pg_by_default [INFO] [stdout] commands::reheader::tests::reheader_command_filters_existing_header [INFO] [stdout] commands::reheader::tests::reheader_no_pg_suppresses_pg [INFO] [stdout] commands::view::tests::stdin_cram_bam_output_honors_mapq_filter [INFO] [stdout] commands::view::tests::stdin_cram_bam_output_succeeds [INFO] [stdout] commands::view::tests::stdin_cram_count_expr_succeeds [INFO] [stdout] commands::view::tests::stdin_cram_cram_output_honors_mapq_filter [INFO] [stdout] [INFO] [stdout] test result: FAILED. 116 passed; 11 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.66s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `-p samtools-rs --lib` [INFO] running `Command { std: "docker" "inspect" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512", kill_on_drop: false }` [INFO] [stdout] be254faf55d2dc15454927577f1a019f3294320e13f8693cb27d20df5b21e512