[INFO] cloning repository https://github.com/haodonLiu/openpdb
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/haodonLiu/openpdb" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhaodonLiu%2Fopenpdb", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhaodonLiu%2Fopenpdb'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 38aa24307fc812aea4c961897a795a2bc1989042
[INFO] testing haodonLiu/openpdb against 1.97.0-beta.6 for beta-1.98-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhaodonLiu%2Fopenpdb" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] [stderr] Updating files:  88% (594/669)
Updating files:  89% (596/669)
Updating files:  90% (603/669)
Updating files:  91% (609/669)
Updating files:  92% (616/669)
Updating files:  93% (623/669)
Updating files:  94% (629/669)
Updating files:  95% (636/669)
Updating files:  96% (643/669)
Updating files:  97% (649/669)
Updating files:  98% (656/669)
Updating files:  99% (663/669)
Updating files: 100% (669/669)
Updating files: 100% (669/669), done.
[INFO] started tweaking git repo https://github.com/haodonLiu/openpdb
[INFO] finished tweaking git repo https://github.com/haodonLiu/openpdb
[INFO] tweaked toml for git repo https://github.com/haodonLiu/openpdb written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/haodonLiu/openpdb on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/haodonLiu/openpdb already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pyo3-macros v0.22.6
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded pyo3-build-config v0.22.6
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.22.6
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded pyo3-ffi v0.22.6
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded nalgebra v0.33.3
[INFO] [stderr]   Downloaded pyo3 v0.22.6
[INFO] [stderr]   Downloaded libc v0.2.184
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9
[INFO] running `Command { std: "docker" "start" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.184
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling cc v1.2.58
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling writeable v0.6.2
[INFO] [stderr]    Compiling zeroize v1.8.2
[INFO] [stderr]    Compiling slab v0.4.12
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling futures-io v0.3.32
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling untrusted v0.9.0
[INFO] [stderr]    Compiling futures-task v0.3.32
[INFO] [stderr]    Compiling rustls v0.23.37
[INFO] [stderr]    Compiling futures-channel v0.3.32
[INFO] [stderr]    Compiling subtle v2.6.1
[INFO] [stderr]    Compiling compression-core v0.4.31
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling rustls-pki-types v1.14.0
[INFO] [stderr]    Compiling compression-codecs v0.4.37
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling futures-util v0.3.32
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling iri-string v0.7.12
[INFO] [stderr]    Compiling pyo3-build-config v0.22.6
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling option-ext v0.2.0
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]    Compiling webpki-roots v1.0.6
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling socket2 v0.6.3
[INFO] [stderr]    Compiling mio v1.2.0
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling dirs-sys v0.5.0
[INFO] [stderr]    Compiling dirs v6.0.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.22.6
[INFO] [stderr]    Compiling pyo3-ffi v0.22.6
[INFO] [stderr]    Compiling pyo3 v0.22.6
[INFO] [stderr]    Compiling tokio v1.50.0
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]    Compiling zerofrom v0.1.7
[INFO] [stderr]    Compiling rustls-webpki v0.103.10
[INFO] [stderr]    Compiling yoke v0.8.2
[INFO] [stderr]    Compiling zerovec v0.11.6
[INFO] [stderr]    Compiling zerotrie v0.2.4
[INFO] [stderr]    Compiling tinystr v0.8.3
[INFO] [stderr]    Compiling potential_utf v0.1.5
[INFO] [stderr]    Compiling icu_collections v2.2.0
[INFO] [stderr]    Compiling icu_locale_core v2.2.0
[INFO] [stderr]    Compiling clap v4.6.0
[INFO] [stderr]    Compiling hyper v1.9.0
[INFO] [stderr]    Compiling async-compression v0.4.41
[INFO] [stderr]    Compiling tower v0.5.3
[INFO] [stderr]    Compiling tokio-util v0.7.18
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling tower-http v0.6.8
[INFO] [stderr]    Compiling icu_provider v2.2.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling pyo3-macros v0.22.6
[INFO] [stderr]    Compiling icu_normalizer v2.2.0
[INFO] [stderr]    Compiling icu_properties v2.2.0
[INFO] [stderr]    Compiling hyper-util v0.1.20
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling tokio-rustls v0.26.4
[INFO] [stderr]    Compiling hyper-rustls v0.27.7
[INFO] [stderr]    Compiling reqwest v0.12.28
[INFO] [stderr]    Compiling openpdb-core v0.1.0 (/opt/rustwide/workdir/crates/openpdb-core)
[INFO] [stderr]    Compiling openpdb-cli v0.1.0 (/opt/rustwide/workdir/crates/openpdb-cli)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 59.23s
[INFO] running `Command { std: "docker" "inspect" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling openpdb-core v0.1.0 (/opt/rustwide/workdir/crates/openpdb-core)
[INFO] [stderr]    Compiling openpdb-cli v0.1.0 (/opt/rustwide/workdir/crates/openpdb-cli)
[INFO] [stdout] warning: unused imports: `PDBChain`, `PDBData`, `PDBModel`, and `PDBResidue`
[INFO] [stdout]   --> crates/openpdb-core/src/validation/clash.rs:75:38
[INFO] [stdout]    |
[INFO] [stdout] 75 |     use crate::io::parser::{PDBAtom, PDBChain, PDBData, PDBModel, PDBResidue};
[INFO] [stdout]    |                                      ^^^^^^^^  ^^^^^^^  ^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.07s
[INFO] running `Command { std: "docker" "inspect" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] warning: unused imports: `PDBChain`, `PDBData`, `PDBModel`, and `PDBResidue`
[INFO] [stderr]   --> crates/openpdb-core/src/validation/clash.rs:75:38
[INFO] [stderr]    |
[INFO] [stderr] 75 |     use crate::io::parser::{PDBAtom, PDBChain, PDBData, PDBModel, PDBResidue};
[INFO] [stderr]    |                                      ^^^^^^^^  ^^^^^^^  ^^^^^^^^  ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `openpdb-core` (lib test) generated 1 warning (run `cargo fix --lib -p openpdb-core --tests` to apply 1 suggestion)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/openpdb-1ef48a5aeddbc990)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openpdb_core-432de9e2173ea477)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test validation::clash::tests::test_detect_clashes ... ok
[INFO] [stdout] test io::writer::tests::test_write_simple_pdb ... ok
[INFO] [stdout] test validation::clash::tests::test_no_clashes ... ok
[INFO] [stdout] test validation::clash::tests::test_empty_atoms ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests openpdb_core
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9", kill_on_drop: false }`
[INFO] [stdout] 83688abefd85c58b8482554c6ebeab1ef97c5e157446041649a2594e783657b9