[INFO] cloning repository https://github.com/ndevenish/rustdose-3d
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ndevenish/rustdose-3d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fndevenish%2Frustdose-3d", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fndevenish%2Frustdose-3d'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2a666f02bba442191eaec3437e9f297261891b28
[INFO] testing ndevenish/rustdose-3d against 1.97.0-beta.6 for beta-1.98-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fndevenish%2Frustdose-3d" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ndevenish/rustdose-3d
[INFO] finished tweaking git repo https://github.com/ndevenish/rustdose-3d
[INFO] tweaked toml for git repo https://github.com/ndevenish/rustdose-3d written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ndevenish/rustdose-3d on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ndevenish/rustdose-3d already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded minicov v0.3.8
[INFO] [stderr]   Downloaded wasm-bindgen-test-macro v0.3.66
[INFO] [stderr]   Downloaded wasm-bindgen-test-shared v0.2.116
[INFO] [stderr]   Downloaded wasm-bindgen-test v0.3.66
[INFO] [stderr]   Downloaded meshopt v0.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261
[INFO] running `Command { std: "docker" "start" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling wasm-bindgen-shared v0.2.116
[INFO] [stderr]    Compiling ucd-trie v0.1.7
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling cc v1.2.58
[INFO] [stderr]    Compiling simd-adler32 v0.3.9
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling httparse v1.10.1
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling rustls v0.23.37
[INFO] [stderr]    Compiling bumpalo v3.20.2
[INFO] [stderr]    Compiling wasm-bindgen v0.2.116
[INFO] [stderr]    Compiling http v1.4.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling raddose3d v0.1.0 (/opt/rustwide/workdir/crates/raddose3d)
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling utf8-zero v0.8.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling pest v2.8.6
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling wasm-bindgen-macro-support v0.2.116
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling float-cmp v0.9.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling ureq-proto v0.6.0
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling meshopt v0.3.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling pest_meta v2.8.6
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling clap v4.6.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling pest_generator v2.8.6
[INFO] [stderr]    Compiling wasm-bindgen-macro v0.2.116
[INFO] [stderr]    Compiling pest_derive v2.8.6
[INFO] [stderr]    Compiling raddose3d-parser v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-parser)
[INFO] [stderr]    Compiling raddose3d-isomesh v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-isomesh)
[INFO] [stderr]    Compiling js-sys v0.3.93
[INFO] [stderr]    Compiling rustls-webpki v0.103.11
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling ureq v3.3.0
[INFO] [stderr]    Compiling serde-wasm-bindgen v0.6.5
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling raddose3d-cli v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-cli)
[INFO] [stderr]    Compiling raddose3d-wasm v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-wasm)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 07s
[INFO] running `Command { std: "docker" "inspect" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling slab v0.4.12
[INFO] [stderr]    Compiling wasm-bindgen-test-macro v0.3.66
[INFO] [stderr]    Compiling async-trait v0.1.89
[INFO] [stderr]    Compiling wasm-bindgen-test-shared v0.2.116
[INFO] [stderr]    Compiling nu-ansi-term v0.50.3
[INFO] [stderr]    Compiling raddose3d-isomesh v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-isomesh)
[INFO] [stderr]    Compiling futures-util v0.3.32
[INFO] [stderr]    Compiling raddose3d-parser v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-parser)
[INFO] [stderr]    Compiling raddose3d v0.1.0 (/opt/rustwide/workdir/crates/raddose3d)
[INFO] [stderr]    Compiling js-sys v0.3.93
[INFO] [stderr]    Compiling raddose3d-cli v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-cli)
[INFO] [stderr]    Compiling wasm-bindgen-futures v0.4.66
[INFO] [stderr]    Compiling serde-wasm-bindgen v0.6.5
[INFO] [stderr]    Compiling wasm-bindgen-test v0.3.66
[INFO] [stderr]    Compiling raddose3d-wasm v0.1.0 (/opt/rustwide/workdir/crates/raddose3d-wasm)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 25.46s
[INFO] running `Command { std: "docker" "inspect" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.28s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/raddose3d-34744dbd616724d5)
[INFO] [stdout] 
[INFO] [stdout] running 64 tests
[INFO] [stdout] test beam::experimental::tests::bilinear_interpolation_corners ... ok
[INFO] [stdout] test beam::experimental::tests::bilinear_interpolation_midpoints ... ok
[INFO] [stdout] test beam::experimental::tests::experimental_beam_horizontal_variation ... ok
[INFO] [stdout] test beam::experimental::tests::experimental_beam_combined_variation ... ok
[INFO] [stdout] test beam::experimental::tests::experimental_beam_vertical_variation ... ok
[INFO] [stdout] test beam::gaussian::tests::gaussian_falls_off_with_distance ... ok
[INFO] [stdout] test beam::gaussian::tests::gaussian_peak_at_centre ... ok
[INFO] [stdout] test beam::tests::create_beam_gaussian ... ok
[INFO] [stdout] test beam::tophat::tests::tophat_uniform_inside_aperture ... ok
[INFO] [stdout] test beam::tophat::tests::tophat_circular_collimation ... ok
[INFO] [stdout] test beam::tophat::tests::tophat_zero_outside_aperture ... ok
[INFO] [stdout] test beam::gaussian::tests::gaussian_circular_clips_correctly ... ok
[INFO] [stdout] test container::tests::transparent_container_zero_attenuation ... ok
[INFO] [stdout] test container::tests::zero_thickness_containers_no_attenuation ... ok
[INFO] [stdout] test container::tests::water_mixture_attenuates_correctly ... ok
[INFO] [stdout] test beam::tests::create_beam_tophat ... ok
[INFO] [stdout] test crystal::polyhedron::tests::polyhedron_concave_depth ... ok
[INFO] [stdout] test container::tests::elemental_container_attenuates_correctly ... ok
[INFO] [stdout] test crystal::polyhedron::tests::test_spherical_new_occupancy ... ok
[INFO] [stdout] test crystal::polyhedron::tests::test_cylinder_geometry_is_valid ... ok
[INFO] [stdout] test coefcalc::from_params::tests::water_only_h_is_twice_o ... ok
[INFO] [stdout] test crystal::polyhedron::tests::test_polyhedron_find_depth_concave ... ok
[INFO] [stdout] test crystal::spherical::tests::test_spherical_depth_outside ... ok
[INFO] [stdout] test crystal::tests::create_crystal_cuboid ... ok
[INFO] [stdout] test coefcalc::from_params::tests::coefcalc_scenario1_sulfur_salt ... ok
[INFO] [stdout] test coefcalc::from_params::tests::heavy_protein_atoms_multiplied_by_monomers ... ok
[INFO] [stdout] test crystal::spherical::tests::test_spherical_occupancy ... ok
[INFO] [stdout] test ddm::tests::ddm_leal_decay_range ... ok
[INFO] [stdout] test crystal::tests::create_crystal_spherical ... ok
[INFO] [stdout] test coefcalc::from_params::tests::coefcalc_scenario3_insulin ... ok
[INFO] [stdout] test coefcalc::from_params::tests::coefcalc_scenario2_heavy_elements ... ok
[INFO] [stdout] test crystal::spherical::tests::test_spherical_depth_at_center ... ok
[INFO] [stdout] test ddm::tests::ddm_linear_decay_range ... ok
[INFO] [stdout] test ddm::tests::ddm_linear_monotonic_decrease ... ok
[INFO] [stdout] test ddm::tests::ddm_leal_monotonic_decrease ... ok
[INFO] [stdout] test ddm::tests::ddm_simple_is_one ... ok
[INFO] [stdout] test element::database::tests::test_database_loads ... ok
[INFO] [stdout] test element::database::tests::test_carbon_cross_sections ... ok
[INFO] [stdout] test element::database::tests::test_elsepa_coefficients ... ok
[INFO] [stdout] test element::database::tests::test_lookup_by_name_and_number ... ok
[INFO] [stdout] test element::database::tests::test_sulfur_properties ... ok
[INFO] [stdout] test ddm::tests::ddm_linear_zero_dose_is_one ... ok
[INFO] [stdout] test element::database::tests::test_hydrogen ... ok
[INFO] [stdout] test element::database::tests::test_iron_cross_sections ... ok
[INFO] [stdout] test output::exposure_summary::tests::dose_hist_break_boundaries ... ok
[INFO] [stdout] test experiment::tests::experiment_multiple_observers_receive_events ... ok
[INFO] [stdout] test output::exposure_summary::tests::dose_hist_normalised_sums_to_one ... ok
[INFO] [stdout] test simulation::java_random::tests::test_next_double_sequence ... ok
[INFO] [stdout] test simulation::java_random::tests::test_next_int_sequence ... ok
[INFO] [stdout] test wedge::tests::wedge_defaults_with_optional_params_missing ... ok
[INFO] [stdout] test crystal::polyhedron::tests::polyhedron_depth_matches_cuboid_for_box_obj ... ok
[INFO] [stdout] test output::exposure_summary::tests::summary_observation_bins_values_correctly ... ok
[INFO] [stdout] test ddm::tests::ddm_leal_zero_dose_is_one ... ok
[INFO] [stdout] test experiment::tests::experiment_close_notifies_observer ... ok
[INFO] [stdout] test wedge::tests::wedge_required_parameters ... ok
[INFO] [stdout] test crystal::cuboid::tests::cuboid_find_depth_unrotated ... ok
[INFO] [stdout] test crystal::polyhedron::tests::test_polyhedron_cryst_coord_and_depth_simple ... ok
[INFO] [stdout] test crystal::cuboid::tests::cuboid_360_rotation_invariance ... ok
[INFO] [stdout] test element::database_em::tests::test_em_database_loads ... ok
[INFO] [stdout] test element::database_em::tests::test_em_hydrogen_values ... ok
[INFO] [stdout] test element::database_em::tests::test_em_iron ... ok
[INFO] [stdout] test element::database_em::tests::test_em_lookup ... ok
[INFO] [stdout] test element::database_em::tests::test_em_interpolation ... ok
[INFO] [stdout] test crystal::cuboid::tests::cuboid_find_depth_symmetry_under_180_rotation ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 64 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/coefcalc_coefficients.rs (/opt/rustwide/target/debug/deps/coefcalc_coefficients-a2283782f5e02032)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test test_average_coefficients ... ok
[INFO] [stdout] test test_small_molecules_mgo3 ... ok
[INFO] [stdout] test test_from_cif_alanine ... ok
[INFO] [stdout] test test_from_sequence_saxs_bsa ... ok
[INFO] [stdout] test test_from_sequence_insulin ... ok
[INFO] [stdout] test test_attenuation_exceeds_absorption ... ok
[INFO] [stdout] test test_photoelectric_decreases_with_energy ... ok
[INFO] [stdout] test test_saxs_582_residues ... ok
[INFO] [stdout] test test_micro_ed_insulin_composition ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/golden_validation.rs (/opt/rustwide/target/debug/deps/golden_validation-7f7ce449e82ecf9b)
[INFO] [stdout] 
[INFO] [stdout] running 27 tests
[INFO] [stdout] test insulin_dose_state_csv_row_count ... ignored, large golden file not in git; run with --ignored (auto-regenerates if jar present)
[INFO] [stdout] test insulin_voxel_dose_row_count ... ignored, large golden file not in git; run with --ignored (auto-regenerates if jar present)
[INFO] [stdout] test insulin_voxel_fluences_row_count ... ignored, large golden file not in git; run with --ignored (auto-regenerates if jar present)
[INFO] [stdout] test multi_beam_csv_has_two_wedge_rows ... ok
[INFO] [stdout] test multi_beam_wedge1_uses_first_beam ... ok
[INFO] [stdout] test multi_beam_wedge2_max_dose ... ok
[INFO] [stdout] test insulin_dose_state_csv_columns_per_row has been running for over 60 seconds
[INFO] [stdout] test insulin_dose_state_r_structure has been running for over 60 seconds
[INFO] [stdout] test insulin_dwds_csv_first_row_values has been running for over 60 seconds
[INFO] [stdout] test insulin_dwds_csv_header has been running for over 60 seconds
[INFO] [stdout] test insulin_dwds_csv_row_count has been running for over 60 seconds
[INFO] [stdout] test insulin_rde_csv_header has been running for over 60 seconds
[INFO] [stdout] test insulin_rde_csv_row_count has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_csv_header has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_csv_row_count has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_txt_avg_dwd has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_txt_crystal_coefcalc_info has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_txt_dose_inefficiency_pe has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_txt_histogram_present has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_txt_max_dose has been running for over 60 seconds
[INFO] [stdout] test insulin_summary_txt_used_volume has been running for over 60 seconds
[INFO] [stdout] test saxs_absorbed_energy_matches_golden ... ok
[INFO] [stderr] error: test failed, to rerun pass `-p raddose3d --test golden_validation`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/golden_validation-7f7ce449e82ecf9b` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261", kill_on_drop: false }`
[INFO] [stdout] f715794cc66025e22e1c8b818d80ff173a544296cfee2498061feda4065c2261
