[INFO] cloning repository https://github.com/koisland/rs-moddotplot
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/koisland/rs-moddotplot" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-moddotplot", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-moddotplot'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 66841c8d5f228631a16fcaa5841bfd468067a4c6
[INFO] testing koisland/rs-moddotplot against 1.97.0-beta.6 for beta-1.98-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-moddotplot" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/koisland/rs-moddotplot
[INFO] removed 0 missing examples
[INFO] finished tweaking git repo https://github.com/koisland/rs-moddotplot
[INFO] tweaked toml for git repo https://github.com/koisland/rs-moddotplot written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/koisland/rs-moddotplot on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/koisland/rs-moddotplot already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded murmur3 v0.5.2
[INFO] [stderr]   Downloaded miniz_oxide v0.8.7
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.3
[INFO] [stderr]   Downloaded zlib-rs v0.5.3
[INFO] [stderr]   Downloaded bstr v1.11.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2
[INFO] running `Command { std: "docker" "start" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling zlib-rs v0.5.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.14
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling murmur3 v0.5.2
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling bstr v1.11.3
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling libz-rs-sys v0.5.3
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling noodles-bgzf v0.38.0
[INFO] [stderr]    Compiling noodles-fasta v0.51.0
[INFO] [stderr]    Compiling noodles v0.96.0
[INFO] [stderr]    Compiling rs-moddotplot v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.95s
[INFO] running `Command { std: "docker" "inspect" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling simd-adler32 v0.3.7
[INFO] [stderr]    Compiling miniz_oxide v0.8.7
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling noodles-bgzf v0.38.0
[INFO] [stderr]    Compiling noodles-fasta v0.51.0
[INFO] [stderr]    Compiling noodles v0.96.0
[INFO] [stderr]    Compiling rs-moddotplot v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `outfile`
[INFO] [stdout]  --> examples/plot_self_ident.rs:8:9
[INFO] [stdout]   |
[INFO] [stdout] 8 |     let outfile = args.get(2).expect("Missing output plot.");
[INFO] [stdout]   |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_outfile`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `fname`
[INFO] [stdout]   --> examples/plot_self_ident.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 |     let fname = path
[INFO] [stdout]    |         ^^^^^ help: if this is intentional, prefix it with an underscore: `_fname`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `groups`
[INFO] [stdout]   --> examples/plot_self_ident.rs:19:9
[INFO] [stdout]    |
[INFO] [stdout] 19 |     let groups = compute_group_seq_self_identity(&rows);
[INFO] [stdout]    |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_groups`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.38s
[INFO] running `Command { std: "docker" "inspect" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `outfile`
[INFO] [stderr]  --> examples/plot_self_ident.rs:8:9
[INFO] [stderr]   |
[INFO] [stderr] 8 |     let outfile = args.get(2).expect("Missing output plot.");
[INFO] [stderr]   |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_outfile`
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `fname`
[INFO] [stderr]   --> examples/plot_self_ident.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 |     let fname = path
[INFO] [stderr]    |         ^^^^^ help: if this is intentional, prefix it with an underscore: `_fname`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `groups`
[INFO] [stderr]   --> examples/plot_self_ident.rs:19:9
[INFO] [stderr]    |
[INFO] [stderr] 19 |     let groups = compute_group_seq_self_identity(&rows);
[INFO] [stderr]    |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_groups`
[INFO] [stderr] 
[INFO] [stderr] warning: `rs-moddotplot` (example "plot_self_ident") generated 3 warnings (run `cargo fix --example "plot_self_ident" -p rs-moddotplot` to apply 3 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rs_moddotplot-49508660eb74a432)
[INFO] [stdout] running 5 tests
[INFO] [stdout] test ani::test::test_partition_overlaps ... ok
[INFO] [stdout] test ani::test::test_remove_ambiguous_bases ... ok
[INFO] [stdout] test ident::test::test_local_ident ... ok
[INFO] [stdout] test ident::test::test_group_ident ... ok
[INFO] [stdout] test ident::test::test_self_ident has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2", kill_on_drop: false }`
[INFO] [stdout] 0f595ab80c62d324bb46caf3a02903ba8ac4e72f4bfd789639d77be2702d02f2
