[INFO] cloning repository https://github.com/omics-rust/rsomics-sc-diffmap
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/omics-rust/rsomics-sc-diffmap" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-sc-diffmap", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-sc-diffmap'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 41166d039fb517056e759a30c108c03bff5b06bd
[INFO] testing omics-rust/rsomics-sc-diffmap against 1.98.0-beta.1 for beta-1.98-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-sc-diffmap" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/omics-rust/rsomics-sc-diffmap
[INFO] finished tweaking git repo https://github.com/omics-rust/rsomics-sc-diffmap
[INFO] tweaked toml for git repo https://github.com/omics-rust/rsomics-sc-diffmap written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/omics-rust/rsomics-sc-diffmap on toolchain 1.98.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/omics-rust/rsomics-sc-diffmap already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd
[INFO] running `Command { std: "docker" "start" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling nano-gemm-codegen v0.2.1
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling syn v2.0.118
[INFO] [stderr]    Compiling pulp v0.22.3
[INFO] [stderr]    Compiling raw-cpuid v11.6.0
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling pulp-wasm-simd-flag v0.1.1
[INFO] [stderr]    Compiling reborrow v0.5.5
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]    Compiling dyn-stack v0.13.2
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling nano-gemm-core v0.2.1
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling zlib-rs v0.6.4
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling anstyle-parse v1.0.0
[INFO] [stderr]    Compiling nano-gemm-f64 v0.2.1
[INFO] [stderr]    Compiling nano-gemm-f32 v0.2.1
[INFO] [stderr]    Compiling nano-gemm-c64 v0.2.1
[INFO] [stderr]    Compiling nano-gemm-c32 v0.2.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling anstyle v1.0.14
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling colorchoice v1.0.5
[INFO] [stderr]    Compiling defer v0.2.1
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling anstream v1.0.0
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling atomic-wait v1.1.0
[INFO] [stderr]    Compiling clap_lex v1.1.0
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling memchr v2.8.2
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling equator-macro v0.4.2
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling interpol v0.2.1
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling private-gemm-x86 v0.1.20
[INFO] [stderr]    Compiling equator v0.4.2
[INFO] [stderr]    Compiling equator-macro v0.2.1
[INFO] [stderr]    Compiling spindle v0.2.6
[INFO] [stderr]    Compiling zip v0.6.6
[INFO] [stderr]    Compiling equator v0.2.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling gemm-common v0.19.0
[INFO] [stderr]    Compiling qd v0.8.0
[INFO] [stderr]    Compiling gemm-f64 v0.19.0
[INFO] [stderr]    Compiling gemm-c64 v0.19.0
[INFO] [stderr]    Compiling gemm-f32 v0.19.0
[INFO] [stderr]    Compiling gemm-c32 v0.19.0
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling generativity v1.2.1
[INFO] [stderr]    Compiling equator-macro v0.6.0
[INFO] [stderr]    Compiling equator v0.6.0
[INFO] [stderr]    Compiling faer-traits v0.24.0
[INFO] [stderr]    Compiling gemm v0.19.0
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling figlet-rs v1.0.0
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling rsomics-help v0.3.1
[INFO] [stderr]    Compiling rsomics-common v0.6.0
[INFO] [stderr]    Compiling nano-gemm v0.2.2
[INFO] [stderr]    Compiling faer v0.24.4
[INFO] [stderr]    Compiling rsomics-sc-diffmap v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 55s
[INFO] running `Command { std: "docker" "inspect" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling zerocopy v0.8.52
[INFO] [stderr]    Compiling zerocopy-derive v0.8.52
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling rsomics-help v0.3.1
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling criterion-plot v0.6.0
[INFO] [stderr]    Compiling gemm-common v0.19.0
[INFO] [stderr]    Compiling spindle v0.2.6
[INFO] [stderr]    Compiling rsomics-common v0.6.0
[INFO] [stderr]    Compiling private-gemm-x86 v0.1.20
[INFO] [stderr]    Compiling gemm-c32 v0.19.0
[INFO] [stderr]    Compiling gemm-f32 v0.19.0
[INFO] [stderr]    Compiling gemm-c64 v0.19.0
[INFO] [stderr]    Compiling gemm-f64 v0.19.0
[INFO] [stderr]    Compiling regex v1.12.4
[INFO] [stderr]    Compiling gemm v0.19.0
[INFO] [stderr]    Compiling faer v0.24.4
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.7.0
[INFO] [stderr]    Compiling rsomics-sc-diffmap v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 26s
[INFO] running `Command { std: "docker" "inspect" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rsomics_sc_diffmap-2c3a3d77333d4e56)
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test diffmap::tests::negative_weight_errors ... ok
[INFO] [stdout] test diffmap::tests::nonfinite_weight_errors ... ok
[INFO] [stdout] test diffmap::tests::n_comps_guard ... ok
[INFO] [stdout] test diffmap::tests::zero_degree_errors ... ok
[INFO] [stdout] test io::tests::dim_inferred_when_no_header ... ok
[INFO] [stdout] test io::tests::empty_errors ... ok
[INFO] [stdout] test io::tests::header_sets_dim_and_keeps_values ... ok
[INFO] [stdout] test io::tests::index_past_declared_dim_errors ... ok
[INFO] [stdout] test io::tests::non_numeric_value_errors ... ok
[INFO] [stdout] test diffmap::tests::sign_is_deterministic ... ok
[INFO] [stdout] test diffmap::tests::steady_state_vector_is_flat ... ok
[INFO] [stdout] test diffmap::tests::ring_steady_state_is_one ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rsomics_sc_diffmap-d6751f08ab2ad85d)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test cli::tests::cli_debug_assert ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/compat.rs (/opt/rustwide/target/debug/deps/compat-3b57548c8e92c161)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test embedding_text_roundtrips_through_run ... ok
[INFO] [stdout] test diffmap_matches_scanpy_golden ... ok
[INFO] [stdout] test diffmap_matches_scanpy_clustered_golden ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 10.84s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd", kill_on_drop: false }`
[INFO] [stdout] e8e985600fc0602134d249996a568c687832e1dbcc8aa81506e72febe37383cd
