[INFO] cloning repository https://github.com/ebareke/ultimaDSEcaller
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ebareke/ultimaDSEcaller" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Febareke%2FultimaDSEcaller", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Febareke%2FultimaDSEcaller'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0d12c996dc6f6837e740072d81487fbbdcf834a1
[INFO] testing ebareke/ultimaDSEcaller against 1.98.0-beta.1 for beta-1.98-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Febareke%2FultimaDSEcaller" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ebareke/ultimaDSEcaller
[INFO] finished tweaking git repo https://github.com/ebareke/ultimaDSEcaller
[INFO] tweaked toml for git repo https://github.com/ebareke/ultimaDSEcaller written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ebareke/ultimaDSEcaller on toolchain 1.98.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ebareke/ultimaDSEcaller already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911
[INFO] running `Command { std: "docker" "start" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling cfg-if v1.0.4
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[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling tracing-subscriber v0.3.23
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[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling rust-lapper v1.2.0
[INFO] [stderr]    Compiling ultimaDSEcaller v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 5m 15s
[INFO] running `Command { std: "docker" "inspect" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-syntax v0.8.11
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[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling assert_cmd v2.2.2
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[INFO] [stderr]    Compiling oorandom v11.1.5
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[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling ultimaDSEcaller v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling proptest v1.11.0
[INFO] [stderr]     Finished `test` profile [optimized + debuginfo] target(s) in 6m 09s
[INFO] running `Command { std: "docker" "inspect" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [optimized + debuginfo] target(s) in 0.53s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ultimadsecaller-e6d174e1e14b9272)
[INFO] [stdout] running 31 tests
[INFO] [stdout] test advanced::tests::detects_alt_promoter_when_well_separated ... ok
[INFO] [stdout] test consensus::tests::brown_at_least_as_conservative_as_fisher ... ok
[INFO] [stdout] test annotation::tests::shared_start_does_not_collide ... ok
[INFO] [stdout] test consensus::tests::stouffer_combines_strong_evidence ... ok
[INFO] [stdout] test consensus::tests::stouffer_combines_weak_evidence ... ok
[INFO] [stdout] test consensus::tests::weighted_fisher_classical_recovery ... ok
[INFO] [stdout] test embedding::tests::pca_separates_two_clusters ... ok
[INFO] [stdout] test embedding::tests::umap_like_runs_without_panic ... ok
[INFO] [stdout] test error::tests::error_message_includes_code ... ok
[INFO] [stdout] test formula::tests::design_matrix_for_2x2 ... ok
[INFO] [stdout] test formula::tests::no_intercept ... ok
[INFO] [stdout] test formula::tests::interaction_columns ... ok
[INFO] [stdout] test glm::tests::glm_recovers_strong_signal ... ok
[INFO] [stdout] test glm::tests::glm_null_signal_returns_high_p ... ok
[INFO] [stdout] test glm::tests::glmm_handles_grouped_data ... ok
[INFO] [stdout] test longread::tests::diu_detects_clear_switch ... ok
[INFO] [stdout] test formula::tests::parses_main_and_interaction ... ok
[INFO] [stdout] test error::tests::codes_are_stable ... ok
[INFO] [stdout] test motif::tests::reverse_complement_basics ... ok
[INFO] [stdout] test formula::tests::star_sugar_expands ... ok
[INFO] [stdout] test longread::tests::signatures_collapse_with_wobble ... ok
[INFO] [stdout] test longread::tests::snap_chain_to_annotated ... ok
[INFO] [stdout] test motif::tests::translates_standard_codons ... ok
[INFO] [stdout] test motif::tests::classifies_canonical_motifs ... ok
[INFO] [stdout] test protein::tests::classifies_in_frame_skip ... ok
[INFO] [stdout] test protein::tests::classifies_frame_shift_skip ... ok
[INFO] [stdout] test protein::tests::parses_cds_records ... ok
[INFO] [stdout] test stats::tests::bb_lrt_no_difference ... ok
[INFO] [stdout] test stats::tests::bh_known_values ... ok
[INFO] [stdout] test stats::tests::fisher_extreme_difference ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/ultimaDSEcaller-c23a09c664450915)
[INFO] [stdout] test stats::tests::fisher_no_difference ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 31 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_basic.rs (/opt/rustwide/target/debug/deps/integration_basic-ffc9b49f60647da2)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test detects_a5ss ... ok
[INFO] [stdout] test detects_canonical_skipped_exon ... ok
[INFO] [stderr]      Running tests/property_tests.rs (/opt/rustwide/target/debug/deps/property_tests-fbccc5f9e00bc761)
[INFO] [stdout] test fdr_monotonic_in_p ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test miri_smoke ... ok
[INFO] [stdout] test motif_classification_total ... ok
[INFO] [stdout] test bh_is_monotone_non_decreasing ... ok
[INFO] [stdout] test fisher_symmetric_under_row_swap ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests ultimadsecaller
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/lib.rs - (line 26) - compile ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] all doctests ran in 1.49s; merged doctests compilation took 1.46s
[INFO] running `Command { std: "docker" "inspect" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911", kill_on_drop: false }`
[INFO] [stdout] 257174b95c403b24831c0256ae20a02933e85afbee37df50691d2530cf8ce911
