[INFO] cloning repository https://github.com/AI4S-YB/Rustpair
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AI4S-YB/Rustpair" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2FRustpair", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2FRustpair'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] cd2682a22e963a34d60cf68aff52bab9e9a80c8c
[INFO] testing AI4S-YB/Rustpair against 1.97.0-beta.6 for beta-1.98-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2FRustpair" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/AI4S-YB/Rustpair
[INFO] finished tweaking git repo https://github.com/AI4S-YB/Rustpair
[INFO] tweaked toml for git repo https://github.com/AI4S-YB/Rustpair written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AI4S-YB/Rustpair on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AI4S-YB/Rustpair already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded kdtree v0.2.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded lz4_flex v0.11.6
[INFO] [stderr]   Downloaded openssl-sys v0.9.113
[INFO] [stderr]   Downloaded cc v1.2.60
[INFO] [stderr]   Downloaded jiff-static v0.2.23
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded libc v0.2.185
[INFO] [stderr]   Downloaded jiff v0.2.23
[INFO] [stderr]   Downloaded curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.6.0+3.6.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf
[INFO] running `Command { std: "docker" "start" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.185
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling anstyle-parse v1.0.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling anstyle v1.0.14
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling colorchoice v1.0.5
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling anstream v1.0.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling clap_lex v1.1.0
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling simd-adler32 v0.3.9
[INFO] [stderr]    Compiling cc v1.2.60
[INFO] [stderr]    Compiling hashbrown v0.17.0
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling openssl-src v300.6.0+3.6.2
[INFO] [stderr]    Compiling indexmap v2.14.0
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling openssl-sys v0.9.113
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling env_filter v1.0.1
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling jiff v0.2.23
[INFO] [stderr]    Compiling unsafe-libyaml v0.2.11
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling once_cell v1.21.4
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling twox-hash v2.1.2
[INFO] [stderr]    Compiling lz4_flex v0.11.6
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling serde_yaml v0.9.34+deprecated
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling memmap2 v0.9.10
[INFO] [stderr]    Compiling kdtree v0.2.1
[INFO] [stderr]    Compiling env_logger v0.11.10
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling pairtools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6m 48s
[INFO] running `Command { std: "docker" "inspect" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling pairtools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.37s
[INFO] running `Command { std: "docker" "inspect" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/pairtools-6255f4a6116c21b1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf", kill_on_drop: false }`
[INFO] [stdout] abdd798ab6bf4a2a2781d96d7803766afe786aa3ebf8a62fe6c2401fa4f1e5bf