[INFO] cloning repository https://github.com/stela2502/subset_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/subset_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 11bd1519fb88a6c7235686618b78ec6e6669d78d
[INFO] documenting stela2502/subset_bam against 1.95.0 for beta-1.96-rustdoc-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/subset_bam
[INFO] finished tweaking git repo https://github.com/stela2502/subset_bam
[INFO] tweaked toml for git repo https://github.com/stela2502/subset_bam written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/subset_bam on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/subset_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
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[INFO] [stderr]   Downloaded serde v1.0.217
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[INFO] [stderr]   Downloaded openssl-src v300.4.2+3.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 105ed4c691c49b95b1a7e385226332d26e515a0ded830d545f722f9021825bf9
[INFO] running `Command { std: "docker" "start" "-a" "105ed4c691c49b95b1a7e385226332d26e515a0ded830d545f722f9021825bf9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "105ed4c691c49b95b1a7e385226332d26e515a0ded830d545f722f9021825bf9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "105ed4c691c49b95b1a7e385226332d26e515a0ded830d545f722f9021825bf9", kill_on_drop: false }`
[INFO] [stdout] 105ed4c691c49b95b1a7e385226332d26e515a0ded830d545f722f9021825bf9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c215f5f4c94ecc248d976e2738231c3268f8497cc4863d3ebabfc0280054ee89
[INFO] running `Command { std: "docker" "start" "-a" "c215f5f4c94ecc248d976e2738231c3268f8497cc4863d3ebabfc0280054ee89", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling unicode-ident v1.0.16
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling vcpkg v0.2.15
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[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]     Checking writeable v0.5.5
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]     Checking icu_locid_transform_data v1.5.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]     Checking icu_properties_data v1.5.0
[INFO] [stderr]     Checking icu_normalizer_data v1.5.0
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]     Checking utf16_iter v1.0.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustversion v1.0.19
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[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking write16 v1.0.0
[INFO] [stderr]    Compiling lazycell v1.3.0
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[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]    Compiling bitflags v2.8.0
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[INFO] [stderr]    Compiling thiserror v1.0.69
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[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking anstyle-parse v0.2.6
[INFO] [stderr]     Checking anstyle-query v1.1.2
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]     Checking colorchoice v1.0.3
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]     Checking anstyle v1.0.10
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v1.1.3
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[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]    Compiling syn v2.0.98
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking clap_builder v4.5.29
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling cc v1.2.14
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.4.2+3.4.1
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling openssl-sys v0.9.105
[INFO] [stderr]    Compiling bzip2-sys v0.1.12+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.79+curl-8.12.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking regex v1.11.1
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[INFO] [stderr]    Compiling yoke-derive v0.7.5
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[INFO] [stderr]    Compiling displaydoc v0.2.5
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[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.5.28
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[INFO] [stderr]     Checking zerofrom v0.1.5
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[INFO] [stderr]     Checking zerovec v0.10.4
[INFO] [stderr]     Checking bio-types v1.0.4
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[INFO] [stderr]     Checking icu_collections v1.5.0
[INFO] [stderr]     Checking clap v4.5.29
[INFO] [stderr]     Checking icu_locid v1.5.0
[INFO] [stderr]     Checking icu_provider v1.5.0
[INFO] [stderr]     Checking icu_locid_transform v1.5.0
[INFO] [stderr]     Checking icu_properties v1.5.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking rust-htslib v0.49.0
[INFO] [stderr]  Documenting multi_subset_bam v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 21s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/multi_subset_bam/index.html
[INFO] running `Command { std: "docker" "inspect" "c215f5f4c94ecc248d976e2738231c3268f8497cc4863d3ebabfc0280054ee89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c215f5f4c94ecc248d976e2738231c3268f8497cc4863d3ebabfc0280054ee89", kill_on_drop: false }`
[INFO] [stdout] c215f5f4c94ecc248d976e2738231c3268f8497cc4863d3ebabfc0280054ee89
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5e96dc3bd124e645dcf842aa01d09e4ccd82af969afb09eb91846bb0b8044b4f
[INFO] running `Command { std: "docker" "start" "-a" "5e96dc3bd124e645dcf842aa01d09e4ccd82af969afb09eb91846bb0b8044b4f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stdout] error[E0425]: cannot find type `SourceFile` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/wrapper.rs:366:26
[INFO] [stdout]     |
[INFO] [stdout] 366 |     Compiler(proc_macro::SourceFile),
[INFO] [stdout]     |                          ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these structs
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::fallback::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `SourceFile`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 366 -     Compiler(proc_macro::SourceFile),
[INFO] [stdout] 366 +     Compiler(SourceFile),
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `SourceFile` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/wrapper.rs:372:32
[INFO] [stdout]     |
[INFO] [stdout] 372 |     fn nightly(sf: proc_macro::SourceFile) -> Self {
[INFO] [stdout]     |                                ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these structs
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::fallback::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `SourceFile`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 372 -     fn nightly(sf: proc_macro::SourceFile) -> Self {
[INFO] [stdout] 372 +     fn nightly(sf: SourceFile) -> Self {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `source_file` found for reference `&proc_macro::Span` in the current scope
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/wrapper.rs:462:56
[INFO] [stdout]     |
[INFO] [stdout] 462 |             Span::Compiler(s) => SourceFile::nightly(s.source_file()),
[INFO] [stdout]     |                                                        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: there is a method `source` with a similar name
[INFO] [stdout]     |
[INFO] [stdout] 462 -             Span::Compiler(s) => SourceFile::nightly(s.source_file()),
[INFO] [stdout] 462 +             Span::Compiler(s) => SourceFile::nightly(s.source()),
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `proc-macro2` (lib) due to 3 previous errors
[INFO] running `Command { std: "docker" "inspect" "5e96dc3bd124e645dcf842aa01d09e4ccd82af969afb09eb91846bb0b8044b4f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e96dc3bd124e645dcf842aa01d09e4ccd82af969afb09eb91846bb0b8044b4f", kill_on_drop: false }`
[INFO] [stdout] 5e96dc3bd124e645dcf842aa01d09e4ccd82af969afb09eb91846bb0b8044b4f
