[INFO] cloning repository https://github.com/stela2502/subset_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/subset_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 11bd1519fb88a6c7235686618b78ec6e6669d78d [INFO] documenting stela2502/subset_bam against beta-2026-04-21 for beta-1.96-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fsubset_bam" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/stela2502/subset_bam [INFO] finished tweaking git repo https://github.com/stela2502/subset_bam [INFO] tweaked toml for git repo https://github.com/stela2502/subset_bam written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/stela2502/subset_bam on toolchain beta-2026-04-21 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/stela2502/subset_bam already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded thiserror v2.0.11 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded anstyle-query v1.1.2 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded anstyle-wincon v3.0.7 [INFO] [stderr] Downloaded colorchoice v1.0.3 [INFO] [stderr] Downloaded clap_lex v0.7.4 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded is_terminal_polyfill v1.70.1 [INFO] [stderr] Downloaded derive-new v0.7.0 [INFO] [stderr] Downloaded thiserror-impl v2.0.11 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded anstyle v1.0.10 [INFO] [stderr] Downloaded cmake v0.1.54 [INFO] [stderr] Downloaded anstyle-parse v0.2.6 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded clang-sys v1.8.1 [INFO] [stderr] Downloaded once_cell v1.20.3 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded bitflags v2.8.0 [INFO] [stderr] Downloaded clap_derive v4.5.28 [INFO] [stderr] Downloaded clap v4.5.29 [INFO] [stderr] Downloaded anstream v0.6.18 [INFO] [stderr] Downloaded openssl-sys v0.9.105 [INFO] [stderr] Downloaded glob v0.3.2 [INFO] [stderr] Downloaded cc v1.2.14 [INFO] [stderr] Downloaded clap_builder v4.5.29 [INFO] [stderr] Downloaded bindgen v0.69.5 [INFO] [stderr] Downloaded bzip2-sys v0.1.12+1.0.8 [INFO] [stderr] Downloaded curl-sys v0.4.79+curl-8.12.0 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.4.2+3.4.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a6cf11425f8ceef7d923ef3f6c894f461d8749fa8f84883611086cd712501e0b [INFO] running `Command { std: "docker" "start" "-a" "a6cf11425f8ceef7d923ef3f6c894f461d8749fa8f84883611086cd712501e0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a6cf11425f8ceef7d923ef3f6c894f461d8749fa8f84883611086cd712501e0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a6cf11425f8ceef7d923ef3f6c894f461d8749fa8f84883611086cd712501e0b", kill_on_drop: false }` [INFO] [stdout] a6cf11425f8ceef7d923ef3f6c894f461d8749fa8f84883611086cd712501e0b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 93bd9df0167041762fa1611a8101716c07a0b203270deb547589e2fefe820415 [INFO] running `Command { std: "docker" "start" "-a" "93bd9df0167041762fa1611a8101716c07a0b203270deb547589e2fefe820415", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling unicode-ident v1.0.16 [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Checking litemap v0.7.4 [INFO] [stderr] Checking writeable v0.5.5 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Checking icu_properties_data v1.5.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Checking utf8_iter v1.0.4 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling syn v2.0.98 [INFO] [stderr] Compiling cc v1.2.14 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking utf16_iter v1.0.5 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Compiling bitflags v2.8.0 [INFO] [stderr] Checking icu_normalizer_data v1.5.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Checking write16 v1.0.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.4.2+3.4.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling openssl-sys v0.9.105 [INFO] [stderr] Compiling libz-sys v1.1.21 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling bzip2-sys v0.1.12+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.79+curl-8.12.0 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Compiling thiserror v2.0.11 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking clap_builder v4.5.29 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking zerofrom v0.1.5 [INFO] [stderr] Compiling thiserror-impl v2.0.11 [INFO] [stderr] Checking yoke v0.7.5 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking zerovec v0.10.4 [INFO] [stderr] Compiling clap_derive v4.5.28 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Checking tinystr v0.7.6 [INFO] [stderr] Checking icu_locid v1.5.0 [INFO] [stderr] Checking icu_collections v1.5.0 [INFO] [stderr] Checking icu_provider v1.5.0 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking clap v4.5.29 [INFO] [stderr] Checking icu_properties v1.5.1 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Checking idna_adapter v1.2.0 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Documenting multi_subset_bam v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 39s [INFO] [stderr] Generated /opt/rustwide/target/doc/multi_subset_bam/index.html [INFO] running `Command { std: "docker" "inspect" "93bd9df0167041762fa1611a8101716c07a0b203270deb547589e2fefe820415", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "93bd9df0167041762fa1611a8101716c07a0b203270deb547589e2fefe820415", kill_on_drop: false }` [INFO] [stdout] 93bd9df0167041762fa1611a8101716c07a0b203270deb547589e2fefe820415 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a3908ce0cc7d25d20c755a63d3a2d90de8d830c3fa6d1c27c5cdb47a62cb768f [INFO] running `Command { std: "docker" "start" "-a" "a3908ce0cc7d25d20c755a63d3a2d90de8d830c3fa6d1c27c5cdb47a62cb768f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.11 [INFO] [stdout] error[E0425]: cannot find type `SourceFile` in crate `proc_macro` [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/wrapper.rs:366:26 [INFO] [stdout] | [INFO] [stdout] 366 | Compiler(proc_macro::SourceFile), [INFO] [stdout] | ^^^^^^^^^^ not found in `proc_macro` [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these structs [INFO] [stdout] | [INFO] [stdout] 1 + use crate::SourceFile; [INFO] [stdout] | [INFO] [stdout] 1 + use crate::fallback::SourceFile; [INFO] [stdout] | [INFO] [stdout] help: if you import `SourceFile`, refer to it directly [INFO] [stdout] | [INFO] [stdout] 366 - Compiler(proc_macro::SourceFile), [INFO] [stdout] 366 + Compiler(SourceFile), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find type `SourceFile` in crate `proc_macro` [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/wrapper.rs:372:32 [INFO] [stdout] | [INFO] [stdout] 372 | fn nightly(sf: proc_macro::SourceFile) -> Self { [INFO] [stdout] | ^^^^^^^^^^ not found in `proc_macro` [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these structs [INFO] [stdout] | [INFO] [stdout] 1 + use crate::SourceFile; [INFO] [stdout] | [INFO] [stdout] 1 + use crate::fallback::SourceFile; [INFO] [stdout] | [INFO] [stdout] help: if you import `SourceFile`, refer to it directly [INFO] [stdout] | [INFO] [stdout] 372 - fn nightly(sf: proc_macro::SourceFile) -> Self { [INFO] [stdout] 372 + fn nightly(sf: SourceFile) -> Self { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `source_file` found for reference `&proc_macro::Span` in the current scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/wrapper.rs:462:56 [INFO] [stdout] | [INFO] [stdout] 462 | Span::Compiler(s) => SourceFile::nightly(s.source_file()), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: there is a method `source` with a similar name [INFO] [stdout] | [INFO] [stdout] 462 - Span::Compiler(s) => SourceFile::nightly(s.source_file()), [INFO] [stdout] 462 + Span::Compiler(s) => SourceFile::nightly(s.source()), [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] [INFO] [stderr] error: could not compile `proc-macro2` (lib) due to 3 previous errors [INFO] running `Command { std: "docker" "inspect" "a3908ce0cc7d25d20c755a63d3a2d90de8d830c3fa6d1c27c5cdb47a62cb768f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3908ce0cc7d25d20c755a63d3a2d90de8d830c3fa6d1c27c5cdb47a62cb768f", kill_on_drop: false }` [INFO] [stdout] a3908ce0cc7d25d20c755a63d3a2d90de8d830c3fa6d1c27c5cdb47a62cb768f