[INFO] fetching crate oxo-flow-core 0.3.0...
[INFO] testing oxo-flow-core-0.3.0 against beta-2026-04-21 for beta-1.96-2
[INFO] extracting crate oxo-flow-core 0.3.0 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate oxo-flow-core 0.3.0
[INFO] finished tweaking crates.io crate oxo-flow-core 0.3.0
[INFO] tweaked toml for crates.io crate oxo-flow-core 0.3.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate oxo-flow-core 0.3.0 on toolchain beta-2026-04-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate oxo-flow-core 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9c24a7c97d498e7df1ace4c89e2a9a7de4b3192435530fd01730df535d0a7ffc
[INFO] running `Command { std: "docker" "start" "-a" "9c24a7c97d498e7df1ace4c89e2a9a7de4b3192435530fd01730df535d0a7ffc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9c24a7c97d498e7df1ace4c89e2a9a7de4b3192435530fd01730df535d0a7ffc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c24a7c97d498e7df1ace4c89e2a9a7de4b3192435530fd01730df535d0a7ffc", kill_on_drop: false }`
[INFO] [stdout] 9c24a7c97d498e7df1ace4c89e2a9a7de4b3192435530fd01730df535d0a7ffc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a9dfced863d6fda9d4797e3960909c7725e8095298f307ee3c8260b988438a09
[INFO] running `Command { std: "docker" "start" "-a" "a9dfced863d6fda9d4797e3960909c7725e8095298f307ee3c8260b988438a09", kill_on_drop: false }`
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling ucd-trie v0.1.7
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling pest v2.8.6
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling deunicode v1.6.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling slug v0.1.6
[INFO] [stderr]    Compiling parking_lot v0.12.5
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling pest_meta v2.8.6
[INFO] [stderr]    Compiling humansize v2.1.3
[INFO] [stderr]    Compiling tokio-macros v2.7.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling globset v0.4.18
[INFO] [stderr]    Compiling pest_generator v2.8.6
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling ignore v0.4.25
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling pest_derive v2.8.6
[INFO] [stderr]    Compiling chrono-tz-build v0.3.0
[INFO] [stderr]    Compiling tokio v1.51.0
[INFO] [stderr]    Compiling uuid v1.23.0
[INFO] [stderr]    Compiling serde_spanned v0.6.9
[INFO] [stderr]    Compiling chrono v0.4.44
[INFO] [stderr]    Compiling toml_datetime v0.6.11
[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling chrono-tz v0.9.0
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling tera v1.20.1
[INFO] [stderr]    Compiling oxo-flow-core v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 12s
[INFO] running `Command { std: "docker" "inspect" "a9dfced863d6fda9d4797e3960909c7725e8095298f307ee3c8260b988438a09", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a9dfced863d6fda9d4797e3960909c7725e8095298f307ee3c8260b988438a09", kill_on_drop: false }`
[INFO] [stdout] a9dfced863d6fda9d4797e3960909c7725e8095298f307ee3c8260b988438a09
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f4e71d2936dc9a886a28bc1f68167b2f5f4c2dfb15a60f614fa150aef0b425b6
[INFO] running `Command { std: "docker" "start" "-a" "f4e71d2936dc9a886a28bc1f68167b2f5f4c2dfb15a60f614fa150aef0b425b6", kill_on_drop: false }`
[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling tera v1.20.1
[INFO] [stderr]    Compiling oxo-flow-core v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 25.60s
[INFO] running `Command { std: "docker" "inspect" "f4e71d2936dc9a886a28bc1f68167b2f5f4c2dfb15a60f614fa150aef0b425b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f4e71d2936dc9a886a28bc1f68167b2f5f4c2dfb15a60f614fa150aef0b425b6", kill_on_drop: false }`
[INFO] [stdout] f4e71d2936dc9a886a28bc1f68167b2f5f4c2dfb15a60f614fa150aef0b425b6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] a8bdc6310f0a50afd14dd678f461d418572f96172fd033d14fbfbe59a58d0804
[INFO] running `Command { std: "docker" "start" "-a" "a8bdc6310f0a50afd14dd678f461d418572f96172fd033d14fbfbe59a58d0804", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/oxo_flow_core-d2c4d86b7cbcf309)
[INFO] [stdout] 
[INFO] [stdout] running 423 tests
[INFO] [stdout] test cluster::tests::backend_from_str ... ok
[INFO] [stdout] test cluster::tests::sge_script_generation ... ok
[INFO] [stdout] test cluster::tests::backend_display ... ok
[INFO] [stdout] test cluster::tests::lsf_script_generation ... ok
[INFO] [stdout] test cluster::tests::slurm_script_generation ... ok
[INFO] [stdout] test cluster::tests::slurm_script_with_extra_args ... ok
[INFO] [stdout] test config::tests::apply_defaults_propagates ... ok
[INFO] [stdout] test config::tests::checksum_deterministic ... ok
[INFO] [stdout] test cluster::tests::cluster_job_construction ... ok
[INFO] [stdout] test cluster::tests::pbs_script_generation ... ok
[INFO] [stdout] test cluster::tests::status_commands ... ok
[INFO] [stdout] test cluster::tests::submit_commands ... ok
[INFO] [stdout] test config::tests::checksum_differs_for_different_configs ... ok
[INFO] [stdout] test config::tests::citation_defaults_to_none ... ok
[INFO] [stdout] test config::tests::clinical_report_section_display ... ok
[INFO] [stdout] test config::tests::biomarker_result_display ... ok
[INFO] [stdout] test config::tests::cluster_defaults_to_none ... ok
[INFO] [stdout] test config::tests::config_values ... ok
[INFO] [stdout] test config::tests::duplicate_rule_names ... ok
[INFO] [stdout] test config::tests::execution_mode_default ... ok
[INFO] [stdout] test config::tests::execution_mode_display ... ok
[INFO] [stdout] test config::tests::gene_panel_display ... ok
[INFO] [stdout] test config::tests::format_version_defaults_to_none ... ok
[INFO] [stdout] test config::tests::genome_build_in_workflow_meta ... ok
[INFO] [stdout] test config::tests::parse_citation_info ... ok
[INFO] [stdout] test config::tests::get_rule_by_name ... ok
[INFO] [stdout] test config::tests::parse_format_version_in_workflow_meta ... ok
[INFO] [stdout] test config::tests::parse_full_workflow ... ok
[INFO] [stdout] test config::tests::include_directive_deserialization ... ok
[INFO] [stdout] test config::tests::parse_resource_budget ... ok
[INFO] [stdout] test config::tests::parse_include_directives ... ok
[INFO] [stdout] test config::tests::qc_threshold_passes ... ok
[INFO] [stdout] test config::tests::reference_database_default ... ok
[INFO] [stdout] test config::tests::parse_cluster_profile ... ok
[INFO] [stdout] test config::tests::reference_database_display ... ok
[INFO] [stdout] test config::tests::resolve_includes_depth_limit ... ok
[INFO] [stdout] test config::tests::parse_workflow_with_reference_db ... ok
[INFO] [stdout] test config::tests::resolve_rule_templates_basic ... ok
[INFO] [stdout] test config::tests::resolve_rule_templates_circular ... ok
[INFO] [stdout] test config::tests::resolve_includes_missing_file ... ok
[INFO] [stdout] test config::tests::resolve_includes_skips_duplicate_rules ... ok
[INFO] [stdout] test config::tests::resolve_rule_templates_override ... ok
[INFO] [stdout] test config::tests::resolve_includes_without_namespace ... ok
[INFO] [stdout] test config::tests::resource_budget_defaults_to_none ... ok
[INFO] [stdout] test config::tests::rule_name_newtype ... ok
[INFO] [stdout] test config::tests::resolve_includes_with_namespace ... ok
[INFO] [stdout] test config::tests::validate_reference_invalid_extension ... ok
[INFO] [stdout] test config::tests::validate_execution_groups_valid ... ok
[INFO] [stdout] test config::tests::rule_names_list ... ok
[INFO] [stdout] test config::tests::validate_execution_groups_unknown_rule ... ok
[INFO] [stdout] test config::tests::validate_reference_valid_path ... ok
[INFO] [stdout] test config::tests::validate_sample_sheet_duplicates ... ok
[INFO] [stdout] test config::tests::resolve_rule_templates_missing_base ... ok
[INFO] [stdout] test config::tests::validate_sample_sheet_valid ... ok
[INFO] [stdout] test config::tests::validate_rejects_bad_execution_groups ... ok
[INFO] [stdout] test config::tests::validate_sample_sheet_empty ... ok
[INFO] [stdout] test config::tests::variant_classification_display ... ok
[INFO] [stdout] test config::tests::wildcard_pattern_newtype ... ok
[INFO] [stdout] test config::tests::workflow_state_lifecycle ... ok
[INFO] [stdout] test container::tests::container_format_display ... ok
[INFO] [stdout] test container::tests::compose_file_without_data_excludes_data_volume ... ok
[INFO] [stdout] test config::tests::workflow_with_advanced_rule_features ... ok
[INFO] [stdout] test container::tests::default_healthcheck_when_none ... ok
[INFO] [stdout] test container::tests::custom_healthcheck ... ok
[INFO] [stdout] test container::tests::generate_basic_dockerfile ... ok
[INFO] [stdout] test container::tests::generate_compose_file_basic ... ok
[INFO] [stdout] test container::tests::generate_docker_run_basic ... ok
[INFO] [stdout] test container::tests::generate_compose_file_with_data ... ok
[INFO] [stdout] test container::tests::generate_docker_run_command_basic ... ok
[INFO] [stdout] test container::tests::generate_docker_run_command_no_memory ... ok
[INFO] [stdout] test container::tests::generate_dockerfile_has_healthcheck ... ok
[INFO] [stdout] test container::tests::generate_dockerfile_with_include_data ... ok
[INFO] [stdout] test container::tests::generate_dockerfile_with_conda ... ok
[INFO] [stdout] test container::tests::generate_singularity_def_basic ... ok
[INFO] [stdout] test container::tests::generate_dockerfile_with_extra_packages ... ok
[INFO] [stdout] test container::tests::generate_multistage_dockerfile_with_pixi ... ok
[INFO] [stdout] test container::tests::generate_multistage_dockerfile ... ok
[INFO] [stdout] test container::tests::generate_dockerfile_with_pixi ... ok
[INFO] [stdout] test container::tests::generate_singularity_def_has_environment_section ... ok
[INFO] [stdout] test container::tests::generate_singularity_def_has_test_section ... ok
[INFO] [stdout] test container::tests::generate_singularity_def_with_conda ... ok
[INFO] [stdout] test container::tests::non_rootless_dockerfile_omits_user ... ok
[INFO] [stdout] test container::tests::multistage_with_rootless ... ok
[INFO] [stdout] test container::tests::rootless_is_default ... ok
[INFO] [stdout] test container::tests::generate_singularity_def_with_pixi ... ok
[INFO] [stdout] test container::tests::generate_singularity_def_with_data ... ok
[INFO] [stdout] test dag::tests::critical_path_independent_rules ... ok
[INFO] [stdout] test container::tests::rootless_dockerfile ... ok
[INFO] [stdout] test dag::tests::critical_path_linear ... ok
[INFO] [stdout] test dag::tests::cycle_detection_shows_path ... ok
[INFO] [stdout] test dag::tests::critical_path_single_node ... ok
[INFO] [stdout] test dag::tests::dag_metrics_display ... ok
[INFO] [stdout] test dag::tests::dag_metrics_linear ... ok
[INFO] [stdout] test dag::tests::dag_with_file_and_depends_on_edges ... ok
[INFO] [stdout] test dag::tests::dag_metrics_wide ... ok
[INFO] [stdout] test dag::tests::critical_path_diamond ... ok
[INFO] [stdout] test dag::tests::diamond_dag ... ok
[INFO] [stdout] test dag::tests::dot_clustered_output ... ok
[INFO] [stdout] test dag::tests::dot_export ... ok
[INFO] [stdout] test dag::tests::duplicate_rule_name ... ok
[INFO] [stdout] test dag::tests::depends_on_creates_edge ... ok
[INFO] [stdout] test dag::tests::dependencies_and_dependents ... ok
[INFO] [stdout] test dag::tests::independent_rules ... ok
[INFO] [stdout] test cluster::tests::job_status_display ... ok
[INFO] [stdout] test dag::tests::linear_dag ... ok
[INFO] [stdout] test dag::tests::orphan_rules_all_independent ... ok
[INFO] [stdout] test dag::tests::orphan_rules_mixed ... ok
[INFO] [stdout] test dag::tests::orphan_rules_none_when_connected ... ok
[INFO] [stdout] test dag::tests::parallel_groups_diamond ... ok
[INFO] [stdout] test dag::tests::parallel_groups_linear ... ok
[INFO] [stdout] test dag::tests::parallel_groups_independent ... ok
[INFO] [stdout] test dag::tests::parallel_groups_single_node ... ok
[INFO] [stdout] test dag::tests::root_and_leaf_rules ... ok
[INFO] [stdout] test dag::tests::rule_not_found ... ok
[INFO] [stdout] test environment::tests::cache_idempotent_mark ... ok
[INFO] [stdout] test environment::tests::cache_initially_empty ... ok
[INFO] [stdout] test environment::tests::cache_mark_and_query ... ok
[INFO] [stdout] test environment::tests::conda_cache_key ... ok
[INFO] [stdout] test environment::tests::conda_setup_command ... ok
[INFO] [stdout] test environment::tests::conda_teardown_bare_name ... ok
[INFO] [stdout] test environment::tests::conda_teardown_command ... ok
[INFO] [stdout] test environment::tests::conda_wrap_command ... ok
[INFO] [stdout] test environment::tests::docker_cache_key ... ok
[INFO] [stdout] test environment::tests::docker_setup_command ... ok
[INFO] [stdout] test environment::tests::docker_teardown_is_noop ... ok
[INFO] [stdout] test environment::tests::docker_wrap_command ... ok
[INFO] [stdout] test environment::tests::environment_cache_operations ... ok
[INFO] [stdout] test environment::tests::pixi_cache_key ... ok
[INFO] [stdout] test environment::tests::pixi_setup_command ... ok
[INFO] [stdout] test environment::tests::pixi_teardown_is_noop ... ok
[INFO] [stdout] test environment::tests::pixi_wrap_command ... ok
[INFO] [stdout] test config::tests::parse_minimal_workflow ... ok
[INFO] [stdout] test environment::tests::resolver_cache_integration ... ok
[INFO] [stdout] test environment::tests::resolver_docker_spec ... ok
[INFO] [stdout] test config::tests::parse_execution_groups ... ok
[INFO] [stdout] test environment::tests::resolver_wraps_conda_spec ... ok
[INFO] [stdout] test dag::tests::stress_test_large_dag ... ok
[INFO] [stdout] test environment::tests::resolver_empty_spec_uses_system ... ok
[INFO] [stdout] test environment::tests::singularity_setup_command ... ok
[INFO] [stdout] test environment::tests::singularity_cache_key ... ok
[INFO] [stdout] test dag::tests::detect_output_collisions_none ... ok
[INFO] [stdout] test dag::tests::has_producer ... ok
[INFO] [stdout] test environment::tests::cache_multiple_entries ... ok
[INFO] [stdout] test environment::tests::system_backend_passthrough ... ok
[INFO] [stdout] test environment::tests::system_cache_key ... ok
[INFO] [stdout] test environment::tests::resolver_wraps_docker_spec ... ok
[INFO] [stdout] test environment::tests::singularity_teardown_is_noop ... ok
[INFO] [stdout] test environment::tests::system_teardown_command ... ok
[INFO] [stdout] test environment::tests::singularity_wrap_command ... ok
[INFO] [stdout] test environment::tests::system_backend_always_available ... ok
[INFO] [stdout] test environment::tests::venv_cache_key ... ok
[INFO] [stdout] test environment::tests::venv_setup_command ... ok
[INFO] [stdout] test environment::tests::venv_teardown_rejects_absolute_path ... ok
[INFO] [stdout] test environment::tests::venv_teardown_guards_unsafe_paths ... ok
[INFO] [stdout] test environment::tests::venv_teardown_command ... ok
[INFO] [stdout] test environment::tests::venv_teardown_rejects_traversal ... ok
[INFO] [stdout] test environment::tests::venv_wrap_command ... ok
[INFO] [stdout] test error::tests::error_display_checkpoint ... ok
[INFO] [stdout] test error::tests::error_display_config ... ok
[INFO] [stdout] test error::tests::error_display_container ... ok
[INFO] [stdout] test error::tests::error_display_task_failed ... ok
[INFO] [stdout] test error::tests::error_display_validation_with_suggestion ... ok
[INFO] [stdout] test error::tests::error_suggestion_config ... ok
[INFO] [stdout] test error::tests::error_suggestion_environment ... ok
[INFO] [stdout] test error::tests::error_suggestion_task_failed ... ok
[INFO] [stdout] test error::tests::error_suggestion_cycle ... ok
[INFO] [stdout] test executor::tests::benchmark_record_creation ... ok
[INFO] [stdout] test error::tests::error_display_integrity ... ok
[INFO] [stdout] test error::tests::error_display_cycle ... ok
[INFO] [stdout] test executor::tests::checkpoint_completed_clears_failed ... ok
[INFO] [stdout] test executor::tests::checkpoint_default_is_empty ... ok
[INFO] [stdout] test executor::tests::checkpoint_default_path ... ok
[INFO] [stdout] test executor::tests::checkpoint_failed_clears_completed ... ok
[INFO] [stdout] test executor::tests::checkpoint_json_round_trip ... ok
[INFO] [stdout] test executor::tests::checkpoint_mark_completed ... ok
[INFO] [stdout] test executor::tests::checkpoint_mark_failed ... ok
[INFO] [stdout] test executor::tests::checkpoint_prometheus_metrics ... ok
[INFO] [stdout] test executor::tests::cleanup_cache_nonexistent_dir ... ok
[INFO] [stdout] test executor::tests::checkpoint_save_and_load ... ok
[INFO] [stdout] test executor::tests::cleanup_temp_outputs_removes_files ... ok
[INFO] [stdout] test executor::tests::compute_file_checksum_basic ... ok
[INFO] [stdout] test environment::tests::system_setup_command ... ok
[INFO] [stdout] test error::tests::error_display_scheduler ... ok
[INFO] [stdout] test executor::tests::cleanup_temp_outputs_ignores_missing ... ok
[INFO] [stdout] test executor::tests::cleanup_temp_outputs_multiple_files ... ok
[INFO] [stdout] test executor::tests::content_aware_skip_no_outputs ... ok
[INFO] [stdout] test executor::tests::content_aware_skip_wildcard_patterns ... ok
[INFO] [stdout] test executor::tests::dry_run_rules ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_config_bool_true ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_config_integer_is_truthy ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_config_missing_key ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_config_string_empty ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_config_string_nonempty ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_empty_is_true ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_literal_false ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_literal_true ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_negated_config ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_negation ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_trimmed_whitespace ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_unknown_treated_as_truthy ... ok
[INFO] [stdout] test executor::tests::execute_dry_run ... ok
[INFO] [stdout] test environment::tests::resolver_available_backends ... ok
[INFO] [stdout] test executor::tests::execute_echo ... ok
[INFO] [stdout] test executor::tests::execute_failing_command ... ok
[INFO] [stdout] test executor::tests::execution_event_json_log ... ok
[INFO] [stdout] test executor::tests::execution_event_rule_completed_serialization ... ok
[INFO] [stdout] test executor::tests::execution_event_rule_skipped_serialization ... ok
[INFO] [stdout] test executor::tests::execution_event_rule_started_serialization ... ok
[INFO] [stdout] test executor::tests::execution_event_type ... ok
[INFO] [stdout] test executor::tests::execution_event_workflow_completed_serialization ... ok
[INFO] [stdout] test executor::tests::execution_event_workflow_started_serialization ... ok
[INFO] [stdout] test executor::tests::execute_wildcard_expansion ... ok
[INFO] [stdout] test executor::tests::execution_provenance_display ... ok
[INFO] [stdout] test executor::tests::execution_stats_from_records ... ok
[INFO] [stdout] test executor::tests::file_is_newer_missing_source ... ok
[INFO] [stdout] test executor::tests::file_is_newer_missing_target ... ok
[INFO] [stdout] test executor::tests::file_is_newer_nonexistent_returns_false ... ok
[INFO] [stdout] test executor::tests::execution_provenance_with_lineage ... ok
[INFO] [stdout] test executor::tests::job_status_display ... ok
[INFO] [stdout] test executor::tests::job_status_display_all_variants ... ok
[INFO] [stdout] test executor::tests::job_status_new_variants_display ... ok
[INFO] [stdout] test executor::tests::provenance_creation ... ok
[INFO] [stdout] test executor::tests::provenance_finish ... ok
[INFO] [stdout] test executor::tests::render_shell_config_values ... ok
[INFO] [stdout] test executor::tests::render_shell_output_all ... ok
[INFO] [stdout] test executor::tests::render_shell_output_indexed ... ok
[INFO] [stdout] test executor::tests::render_shell_threads ... ok
[INFO] [stdout] test executor::tests::sanitize_shell_dangerous_command ... ok
[INFO] [stdout] test executor::tests::execute_output_index_expansion ... ok
[INFO] [stdout] test executor::tests::sanitize_shell_safe_command ... ok
[INFO] [stdout] test executor::tests::should_skip_rule_no_inputs_all_outputs_exist ... ok
[INFO] [stdout] test executor::tests::should_skip_rule_no_outputs ... ok
[INFO] [stdout] test executor::tests::should_skip_rule_outputs_missing ... ok
[INFO] [stdout] test dag::tests::detect_output_collisions_found ... ok
[INFO] [stdout] test executor::tests::compute_input_checksums_skips_wildcards ... ok
[INFO] [stdout] test executor::tests::file_is_newer_with_real_files ... ok
[INFO] [stdout] test executor::tests::should_skip_rule_outputs_stale ... ok
[INFO] [stdout] test executor::tests::should_skip_rule_outputs_up_to_date ... ok
[INFO] [stdout] test executor::tests::execute_with_timeout ... ok
[INFO] [stdout] test executor::tests::should_skip_rule_wildcard_patterns ... ok
[INFO] [stdout] test executor::tests::benchmark_record_placeholder_fields ... ok
[INFO] [stdout] test executor::tests::validate_path_safe ... ok
[INFO] [stdout] test format::tests::check_format_version_incompatible ... ok
[INFO] [stdout] test format::tests::diagnostic_display ... ok
[INFO] [stdout] test format::tests::diagnostic_with_suggestion ... ok
[INFO] [stdout] test format::tests::diff_added_rule ... ok
[INFO] [stdout] test format::tests::diff_changed_field ... ok
[INFO] [stdout] test format::tests::check_format_version_compatible ... ok
[INFO] [stdout] test executor::tests::verify_output_checksums_mismatch ... ok
[INFO] [stdout] test executor::tests::validate_path_traversal ... ok
[INFO] [stdout] test format::tests::diff_removed_rule ... ok
[INFO] [stdout] test format::tests::diff_identical_workflows ... ok
[INFO] [stdout] test format::tests::format_roundtrip ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_includes ... ok
[INFO] [stdout] test format::tests::check_format_version_exact_match ... ok
[INFO] [stdout] test format::tests::format_retries_zero_not_emitted ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_scatter ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_temp_and_protected_output ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_execution_groups ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_when ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_retries ... ok
[INFO] [stdout] test executor::tests::evaluate_condition_config_bool_false ... ok
[INFO] [stdout] test format::tests::format_workflow_includes_retry_delay ... ok
[INFO] [stdout] test format::tests::format_roundtrip_with_input_function ... ok
[INFO] [stdout] test format::tests::format_workflow_includes_on_success ... ok
[INFO] [stdout] test format::tests::format_workflow_includes_workdir ... ok
[INFO] [stdout] test format::tests::format_workflow_includes_on_failure ... ok
[INFO] [stdout] test format::tests::lint_checkpoint_with_outputs_no_w010 ... ok
[INFO] [stdout] test format::tests::lint_missing_descriptions ... ok
[INFO] [stdout] test format::tests::lint_missing_log ... ok
[INFO] [stdout] test format::tests::format_workflow_includes_depends_on ... ok
[INFO] [stdout] test format::tests::lint_shadow_no_inputs ... ok
[INFO] [stdout] test format::tests::lint_shadow_with_inputs_no_w011 ... ok
[INFO] [stdout] test format::tests::lint_checkpoint_no_outputs ... ok
[INFO] [stdout] test format::tests::lint_high_threads_no_memory ... ok
[INFO] [stdout] test format::tests::known_bio_formats ... ok
[INFO] [stdout] test format::tests::lint_very_high_threads_no_memory ... ok
[INFO] [stdout] test format::tests::lint_w012_retries_with_retry_delay_no_warning ... ok
[INFO] [stdout] test format::tests::lint_w012_retries_without_retry_delay ... ok
[INFO] [stdout] test executor::tests::validate_outputs_skips_wildcards ... ok
[INFO] [stdout] test format::tests::lint_w013_on_failure_with_retries_no_warning ... ok
[INFO] [stdout] test format::tests::lint_w013_on_failure_without_retries ... ok
[INFO] [stdout] test format::tests::lint_w014_depends_on_known_rule_no_warning ... ok
[INFO] [stdout] test format::tests::lint_w014_depends_on_unknown_rule ... ok
[INFO] [stdout] test format::tests::lint_warns_unlocked_environment ... ok
[INFO] [stdout] test format::tests::secret_scanning_clean_config ... ok
[INFO] [stdout] test format::tests::secret_scanning_detects_aws_key ... ok
[INFO] [stdout] test format::tests::severity_ordering ... ok
[INFO] [stdout] test format::tests::validate_e008_extends_valid_rule_no_error ... ok
[INFO] [stdout] test format::tests::validate_e007_depends_on_nonexistent_rule ... ok
[INFO] [stdout] test format::tests::validate_e007_depends_on_valid_rule_no_error ... ok
[INFO] [stdout] test format::tests::validate_e008_extends_nonexistent_rule ... ok
[INFO] [stdout] test executor::tests::validate_outputs_finds_missing ... ok
[INFO] [stdout] test format::tests::validate_empty_workflow_name ... ok
[INFO] [stdout] test format::tests::lint_when_conditional_rule ... ok
[INFO] [stdout] test format::tests::validate_wildcard_consistency ... ok
[INFO] [stdout] test format::tests::verify_schema_invalid_toml ... ok
[INFO] [stdout] test format::tests::verify_schema_known_keys_no_warning ... ok
[INFO] [stdout] test format::tests::verify_schema_missing_workflow ... ok
[INFO] [stdout] test format::tests::verify_schema_missing_workflow_name ... ok
[INFO] [stdout] test format::tests::verify_schema_rule_missing_name ... ok
[INFO] [stdout] test format::tests::verify_schema_unknown_format_version ... ok
[INFO] [stdout] test format::tests::verify_schema_unknown_top_level_key ... ok
[INFO] [stdout] test format::tests::verify_schema_format_version_set ... ok
[INFO] [stdout] test format::tests::verify_schema_valid ... ok
[INFO] [stdout] test report::tests::chart_section_renders_svg ... ok
[INFO] [stdout] test report::tests::clinical_disclaimer_section_generation ... ok
[INFO] [stdout] test report::tests::create_report ... ok
[INFO] [stdout] test report::tests::execution_summary_section ... ok
[INFO] [stdout] test report::tests::execution_time_chart_from_records ... ok
[INFO] [stdout] test report::tests::provenance_section_generation ... ok
[INFO] [stdout] test report::tests::qc_metric_serialization ... ok
[INFO] [stdout] test report::tests::qc_metrics_section_generation ... ok
[INFO] [stdout] test report::tests::report_add_section ... ok
[INFO] [stdout] test report::tests::report_html_has_dark_mode ... ok
[INFO] [stdout] test report::tests::report_html_has_toc ... ok
[INFO] [stdout] test format::tests::validate_undefined_config_ref ... ok
[INFO] [stdout] test report::tests::report_provenance_section ... ok
[INFO] [stdout] test report::tests::report_to_json ... ok
[INFO] [stdout] test report::tests::report_to_html ... ok
[INFO] [stdout] test report::tests::sample_info_section_generation ... ok
[INFO] [stdout] test report::tests::sample_info_serialization ... ok
[INFO] [stdout] test format::tests::validate_valid_workflow ... ok
[INFO] [stdout] test format::tests::validate_invalid_memory ... ok
[INFO] [stdout] test report::tests::template_engine_missing_template_error ... ok
[INFO] [stdout] test report::tests::template_engine_add_and_render ... ok
[INFO] [stdout] test report::tests::variant_summary_none_significance ... ok
[INFO] [stdout] test report::tests::variant_summary_serialization ... ok
[INFO] [stdout] test rule::tests::default_resources ... ok
[INFO] [stdout] test report::tests::variant_summary_section_generation ... ok
[INFO] [stdout] test rule::tests::depends_on_deserialization ... ok
[INFO] [stdout] test report::tests::template_engine_render_report_with_sections ... ok
[INFO] [stdout] test rule::tests::environment_spec_conda ... ok
[INFO] [stdout] test rule::tests::environment_spec_empty ... ok
[INFO] [stdout] test rule::tests::environment_spec_with_modules ... ok
[INFO] [stdout] test rule::tests::gpu_spec_default ... ok
[INFO] [stdout] test rule::tests::on_failure_default_is_none ... ok
[INFO] [stdout] test rule::tests::on_failure_deserialization ... ok
[INFO] [stdout] test rule::tests::on_success_default_is_none ... ok
[INFO] [stdout] test rule::tests::on_success_deserialization ... ok
[INFO] [stdout] test rule::tests::depends_on_default_is_empty ... ok
[INFO] [stdout] test rule::tests::parse_duration_secs_invalid ... ok
[INFO] [stdout] test rule::tests::parse_duration_secs_minutes ... ok
[INFO] [stdout] test rule::tests::effective_threads_shorthand ... ok
[INFO] [stdout] test format::tests::workflow_stats_basic ... ok
[INFO] [stdout] test rule::tests::parse_duration_secs_seconds ... ok
[INFO] [stdout] test rule::tests::resource_hint_default ... ok
[INFO] [stdout] test rule::tests::parse_duration_secs_hours ... ok
[INFO] [stdout] test rule::tests::retry_delay_default_is_none ... ok
[INFO] [stdout] test format::tests::format_version_is_set ... ok
[INFO] [stdout] test rule::tests::rule_ancient_default_empty ... ok
[INFO] [stdout] test rule::tests::retry_delay_invalid_format_rejected_by_validate ... ok
[INFO] [stdout] test rule::tests::retry_delay_valid_formats ... ok
[INFO] [stdout] test rule::tests::rule_builder_depends_on ... ok
[INFO] [stdout] test rule::tests::rule_builder_basic ... ok
[INFO] [stdout] test rule::tests::rule_builder_on_failure ... ok
[INFO] [stdout] test rule::tests::rule_ancient_field ... ok
[INFO] [stdout] test rule::tests::rule_builder_on_success ... ok
[INFO] [stdout] test rule::tests::retry_delay_deserialization ... ok
[INFO] [stdout] test rule::tests::rule_builder_retry_delay ... ok
[INFO] [stdout] test rule::tests::rule_builder_workdir ... ok
[INFO] [stdout] test rule::tests::rule_checkpoint_default_false ... ok
[INFO] [stdout] test rule::tests::rule_checkpoint_field ... ok
[INFO] [stdout] test rule::tests::rule_default_new_fields ... ok
[INFO] [stdout] test rule::tests::rule_deserialize_from_toml ... ok
[INFO] [stdout] test rule::tests::rule_envvars_default_empty ... ok
[INFO] [stdout] test rule::tests::rule_envvars_field ... ok
[INFO] [stdout] test rule::tests::rule_input_function ... ok
[INFO] [stdout] test rule::tests::rule_builder_with_all_options ... ok
[INFO] [stdout] test rule::tests::rule_localrule_field ... ok
[INFO] [stdout] test rule::tests::rule_localrule_default_false ... ok
[INFO] [stdout] test rule::tests::rule_retries ... ok
[INFO] [stdout] test rule::tests::rule_scatter_config ... ok
[INFO] [stdout] test rule::tests::rule_builder_all_new_fields ... ok
[INFO] [stdout] test rule::tests::rule_shadow_field ... ok
[INFO] [stdout] test rule::tests::rule_shadow_default_none ... ok
[INFO] [stdout] test rule::tests::rule_temp_and_protected_outputs ... ok
[INFO] [stdout] test rule::tests::rule_when_conditional ... ok
[INFO] [stdout] test rule::tests::rule_with_tags ... ok
[INFO] [stdout] test rule::tests::scatter_config_deserialization ... ok
[INFO] [stdout] test rule::tests::validate_empty_name ... ok
[INFO] [stdout] test rule::tests::validate_invalid_memory ... ok
[INFO] [stdout] test rule::tests::validate_invalid_memory_no_unit ... ok
[INFO] [stdout] test rule::tests::validate_invalid_name_chars ... ok
[INFO] [stdout] test rule::tests::validate_outputs_without_command ... ok
[INFO] [stdout] test rule::tests::validate_valid_memory ... ok
[INFO] [stdout] test rule::tests::validate_valid_rule ... ok
[INFO] [stdout] test rule::tests::validate_whitespace_only_name ... ok
[INFO] [stdout] test rule::tests::rule_builder_with_new_fields ... ok
[INFO] [stdout] test rule::tests::validate_zero_threads ... ok
[INFO] [stdout] test scheduler::tests::parse_memory ... ok
[INFO] [stdout] test rule::tests::rule_metadata_field ... ok
[INFO] [stdout] test rule::tests::workdir_deserialization ... ok
[INFO] [stdout] test scheduler::tests::resource_pool ... ok
[INFO] [stdout] test scheduler::tests::scheduler_critical_path_priority ... ok
[INFO] [stdout] test scheduler::tests::scheduler_initial_state ... ok
[INFO] [stdout] test scheduler::tests::scheduler_mark_running_and_complete ... ok
[INFO] [stdout] test rule::tests::workdir_default_is_none ... ok
[INFO] [stdout] test scheduler::tests::scheduler_ready_rules ... ok
[INFO] [stdout] test scheduler::tests::scheduler_ready_rules_prioritized ... ok
[INFO] [stdout] test wildcard::tests::cartesian_product_empty ... ok
[INFO] [stdout] test scheduler::tests::scheduler_summary ... ok
[INFO] [stdout] test wildcard::tests::cartesian_product_two_dimensions ... ok
[INFO] [stdout] test wildcard::tests::cartesian_product_single ... ok
[INFO] [stdout] test report::tests::template_engine_creation ... ok
[INFO] [stdout] test rule::tests::rule_wildcard_extraction ... ok
[INFO] [stdout] test format::tests::lint_scatter_rule ... ok
[INFO] [stdout] test wildcard::tests::expand_pattern_missing_wildcard ... ok
[INFO] [stdout] test wildcard::tests::expand_pattern_success ... ok
[INFO] [stdout] test wildcard::tests::has_wildcards_false ... ok
[INFO] [stdout] test wildcard::tests::discover_wildcards_from_directory ... ok
[INFO] [stdout] test wildcard::tests::paired_end_pattern_basic ... ok
[INFO] [stdout] test wildcard::tests::extract_wildcards_none ... ok
[INFO] [stdout] test wildcard::tests::extract_wildcards_simple ... ok
[INFO] [stdout] test wildcard::tests::validate_constraints_bad_regex ... ok
[INFO] [stdout] test wildcard::tests::validate_constraints_fail ... ok
[INFO] [stdout] test wildcard::tests::expand_pattern_no_wildcards ... ok
[INFO] [stdout] test wildcard::tests::validate_constraints_pass ... ok
[INFO] [stdout] test wildcard::tests::extract_wildcards_duplicate ... ok
[INFO] [stdout] test wildcard::tests::has_wildcards_true ... ok
[INFO] [stdout] test wildcard::tests::pattern_to_regex_basic ... ok
[INFO] [stdout] test wildcard::tests::pattern_to_regex_no_wildcards ... ok
[INFO] [stdout] test format::tests::validation_result_methods ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 423 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.79s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests oxo_flow_core
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test src/rule.rs - rule::RuleBuilder (line 504) ... ok
[INFO] [stdout] test src/lib.rs - (line 20) ... ok
[INFO] [stdout] test src/wildcard.rs - wildcard::paired_end_pattern (line 265) ... ok
[INFO] [stdout] test src/wildcard.rs - wildcard::WildcardConstraints (line 23) ... ok
[INFO] [stdout] test src/wildcard.rs - wildcard::expand_pattern (line 166) ... ok
[INFO] [stdout] test src/wildcard.rs - wildcard::extract_wildcards (line 144) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stdout] all doctests ran in 1.09s; merged doctests compilation took 1.05s
[INFO] running `Command { std: "docker" "inspect" "a8bdc6310f0a50afd14dd678f461d418572f96172fd033d14fbfbe59a58d0804", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a8bdc6310f0a50afd14dd678f461d418572f96172fd033d14fbfbe59a58d0804", kill_on_drop: false }`
[INFO] [stdout] a8bdc6310f0a50afd14dd678f461d418572f96172fd033d14fbfbe59a58d0804
