[INFO] fetching crate holodeck 0.2.0...
[INFO] testing holodeck-0.2.0 against beta-2026-04-21 for beta-1.96-2
[INFO] extracting crate holodeck 0.2.0 into /workspace/builds/worker-2-tc2/source
[INFO] removed /workspace/builds/worker-2-tc2/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-2-tc2/source/rust-toolchain.toml
[INFO] started tweaking crates.io crate holodeck 0.2.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate holodeck 0.2.0
[INFO] tweaked toml for crates.io crate holodeck 0.2.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate holodeck 0.2.0 on toolchain beta-2026-04-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate holodeck 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 34c0d556f20d732f44f08795e6cf22c4e8f7832df1fc6f8451f766bb79785131
[INFO] running `Command { std: "docker" "start" "-a" "34c0d556f20d732f44f08795e6cf22c4e8f7832df1fc6f8451f766bb79785131", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "34c0d556f20d732f44f08795e6cf22c4e8f7832df1fc6f8451f766bb79785131", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "34c0d556f20d732f44f08795e6cf22c4e8f7832df1fc6f8451f766bb79785131", kill_on_drop: false }`
[INFO] [stdout] 34c0d556f20d732f44f08795e6cf22c4e8f7832df1fc6f8451f766bb79785131
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 23278499d0fb2baea24340194b150fe7ce29f8d62b1df7687c3cccf029645ebf
[INFO] running `Command { std: "docker" "start" "-a" "23278499d0fb2baea24340194b150fe7ce29f8d62b1df7687c3cccf029645ebf", kill_on_drop: false }`
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling litemap v0.8.2
[INFO] [stderr]    Compiling writeable v0.6.3
[INFO] [stderr]    Compiling utf8_iter v1.0.4
[INFO] [stderr]    Compiling zerofrom v0.1.7
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]    Compiling zlib-rs v0.6.3
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling bit-vec v0.9.1
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling yoke v0.8.2
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling futures-sink v0.3.32
[INFO] [stderr]    Compiling futures-core v0.3.32
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]    Compiling once_cell v1.21.4
[INFO] [stderr]    Compiling nanorand v0.7.0
[INFO] [stderr]    Compiling jiff v0.2.23
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling oneshot v0.2.1
[INFO] [stderr]    Compiling cc v1.2.60
[INFO] [stderr]    Compiling zerovec v0.11.6
[INFO] [stderr]    Compiling zerotrie v0.2.4
[INFO] [stderr]    Compiling coitrees v0.4.0
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling enum_dispatch v0.3.13
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling rand v0.9.4
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling chrono v0.4.44
[INFO] [stderr]    Compiling rand_distr v0.5.1
[INFO] [stderr]    Compiling tinystr v0.8.3
[INFO] [stderr]    Compiling potential_utf v0.1.5
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling icu_collections v2.2.0
[INFO] [stderr]    Compiling icu_locale_core v2.2.0
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling libdeflate-sys v1.25.2
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling libgit2-sys v0.18.3+1.9.2
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.44
[INFO] [stderr]    Compiling libz-ng-sys v1.1.28
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling icu_provider v2.2.0
[INFO] [stderr]    Compiling icu_normalizer v2.2.0
[INFO] [stderr]    Compiling icu_properties v2.2.0
[INFO] [stderr]    Compiling noodles-core v0.19.0
[INFO] [stderr]    Compiling env_filter v1.0.1
[INFO] [stderr]    Compiling libdeflater v1.25.2
[INFO] [stderr]    Compiling bgzf v0.3.0
[INFO] [stderr]    Compiling pooled-writer v0.4.0
[INFO] [stderr]    Compiling mimalloc v0.1.48
[INFO] [stderr]    Compiling env_logger v0.11.10
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling clap v4.6.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling git2 v0.20.4
[INFO] [stderr]    Compiling built v0.8.0
[INFO] [stderr]    Compiling holodeck v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling noodles-bgzf v0.46.0
[INFO] [stderr]    Compiling noodles-csi v0.55.0
[INFO] [stderr]    Compiling noodles-fasta v0.60.0
[INFO] [stderr]    Compiling noodles-sam v0.84.0
[INFO] [stderr]    Compiling noodles-tabix v0.61.0
[INFO] [stderr]    Compiling noodles-vcf v0.87.0
[INFO] [stderr]    Compiling noodles-bam v0.88.0
[INFO] [stderr]    Compiling noodles v0.109.0
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 06s
[INFO] running `Command { std: "docker" "inspect" "23278499d0fb2baea24340194b150fe7ce29f8d62b1df7687c3cccf029645ebf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "23278499d0fb2baea24340194b150fe7ce29f8d62b1df7687c3cccf029645ebf", kill_on_drop: false }`
[INFO] [stdout] 23278499d0fb2baea24340194b150fe7ce29f8d62b1df7687c3cccf029645ebf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8d68323db7b7df05fa724a0ce8fd9da7dd1d0fb0541ef2293f242e6c7faf5f6a
[INFO] running `Command { std: "docker" "start" "-a" "8d68323db7b7df05fa724a0ce8fd9da7dd1d0fb0541ef2293f242e6c7faf5f6a", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling clap v4.6.0
[INFO] [stderr]    Compiling holodeck v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 16.73s
[INFO] running `Command { std: "docker" "inspect" "8d68323db7b7df05fa724a0ce8fd9da7dd1d0fb0541ef2293f242e6c7faf5f6a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8d68323db7b7df05fa724a0ce8fd9da7dd1d0fb0541ef2293f242e6c7faf5f6a", kill_on_drop: false }`
[INFO] [stdout] 8d68323db7b7df05fa724a0ce8fd9da7dd1d0fb0541ef2293f242e6c7faf5f6a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0bf17674c1816294a5734f7891322a95b8633140776ea17ffae8ebb93a7e1704
[INFO] running `Command { std: "docker" "start" "-a" "0bf17674c1816294a5734f7891322a95b8633140776ea17ffae8ebb93a7e1704", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.29s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/holodeck_lib-5c3c372977ae8d5a)
[INFO] [stdout] 
[INFO] [stdout] running 132 tests
[INFO] [stdout] test bed::tests::test_sampler_empty_intervals ... ok
[INFO] [stdout] test bed::tests::test_sampler_padding_clamped_to_zero ... ok
[INFO] [stdout] test bed::tests::test_sampler_merges_overlapping_padded_intervals ... ok
[INFO] [stdout] test bed::tests::test_sampler_single_interval_no_pad ... ok
[INFO] [stdout] test bed::tests::test_sampler_samples_proportional_to_interval_size ... ok
[INFO] [stdout] test bed::tests::test_sampler_padding_extends_left ... ok
[INFO] [stdout] test bed::tests::test_contig_intervals_empty_contig ... ok
[INFO] [stdout] test commands::command::tests::test_output_path_no_directory ... ok
[INFO] [stdout] test bed::tests::test_contig_effective_territory ... ok
[INFO] [stdout] test commands::eval::tests::test_format_bin_label ... ok
[INFO] [stdout] test commands::eval::tests::test_mapq_bin ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_genotype_haploid ... ok
[INFO] [stdout] test bed::tests::test_load_simple_bed ... ok
[INFO] [stdout] test bed::tests::test_contig_intervals_returns_sorted_intervals ... ok
[INFO] [stdout] test bed::tests::test_overlap_single_base ... ok
[INFO] [stdout] test bed::tests::test_error_start_gte_end ... ok
[INFO] [stdout] test bed::tests::test_overlap_hit ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_indel_insertion ... ok
[INFO] [stdout] test bed::tests::test_skips_comments_and_blank_lines ... ok
[INFO] [stdout] test bed::tests::test_overlap_miss ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_indel_deletion ... ok
[INFO] [stdout] test error_model::illumina::tests::test_apply_errors_reproducible ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_genotype_diploid_het ... ok
[INFO] [stdout] test error_model::illumina::tests::test_apply_errors_zero_rate ... ok
[INFO] [stdout] test error_model::illumina::tests::test_error_rate_at_start ... ok
[INFO] [stdout] test error_model::illumina::tests::test_error_rate_flat_before_decay ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_mnp ... ok
[INFO] [stdout] test bed::tests::test_effective_territory_multiple_targets ... ok
[INFO] [stdout] test bed::tests::test_error_unknown_contig ... ok
[INFO] [stdout] test error_model::illumina::tests::test_error_rate_ramps_to_max ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_genotype_triploid ... ok
[INFO] [stdout] test error_model::illumina::tests::test_apply_errors_quality_encoding ... ok
[INFO] [stdout] test error_model::illumina::tests::test_apply_errors_introduces_errors ... ok
[INFO] [stdout] test commands::command::tests::test_output_path_simple ... ok
[INFO] [stdout] test commands::eval::tests::test_write_bin_row ... ok
[INFO] [stdout] test commands::mutate::tests::test_generate_snp ... ok
[INFO] [stdout] test error_model::illumina::tests::test_error_rate_increases_monotonically ... ok
[INFO] [stdout] test error_model::illumina::tests::test_r2_higher_than_r1 ... ok
[INFO] [stdout] test error_model::illumina::tests::test_r2_multiplier ... ok
[INFO] [stdout] test error_model::tests::test_random_different_base_all_bases ... ok
[INFO] [stdout] test fragment::tests::test_extract_r1_fragment_longer_than_read ... ok
[INFO] [stdout] test fragment::tests::test_extract_r1_short_fragment_with_adapter ... ok
[INFO] [stdout] test fragment::tests::test_extract_r2_fragment_longer_than_read ... ok
[INFO] [stdout] test fasta::tests::test_load_contig_multiple ... ok
[INFO] [stdout] test fragment::tests::test_extract_empty_fragment_all_adapter ... ok
[INFO] [stdout] test fragment::tests::test_extract_r1_full_fragment ... ok
[INFO] [stdout] test fasta::tests::test_load_contig_uppercase ... ok
[INFO] [stdout] test error_model::tests::test_random_different_base_never_same ... ok
[INFO] [stdout] test fasta::tests::test_load_contig_single ... ok
[INFO] [stdout] test fasta::tests::test_load_contig_out_of_order ... ok
[INFO] [stdout] test fragment::tests::test_extract_r2_short_fragment_with_adapter ... ok
[INFO] [stdout] test fragment::tests::test_reverse_complement ... ok
[INFO] [stdout] test fragment::tests::test_extract_r2_full_fragment ... ok
[INFO] [stdout] test fragment::tests::test_reverse_complement_with_n ... ok
[INFO] [stdout] test haplotype::tests::test_extract_fragment_with_snp ... ok
[INFO] [stdout] test haplotype::tests::test_extract_fragment_with_insertion ... ok
[INFO] [stdout] test haplotype::tests::test_fragment_starts_mid_reference ... ok
[INFO] [stdout] test haplotype::tests::test_fragment_starts_within_deletion ... ok
[INFO] [stdout] test haplotype::tests::test_hom_alt_both_haplotypes_affected ... ok
[INFO] [stdout] test haplotype::tests::test_extract_fragment_with_deletion ... ok
[INFO] [stdout] test haplotype::tests::test_phased_allele_assignment ... ok
[INFO] [stdout] test haplotype::tests::test_extract_fragment_no_variants ... ok
[INFO] [stdout] test haplotype::tests::test_adjacent_variants ... ok
[INFO] [stdout] test haplotype::tests::test_unphased_hom_alt_both_haplotypes ... ok
[INFO] [stdout] test ploidy::tests::test_default_ploidy ... ok
[INFO] [stdout] test ploidy::tests::test_range_override ... ok
[INFO] [stdout] test ploidy::tests::test_whole_contig_override ... ok
[INFO] [stdout] test read::tests::test_adapter_cigar_softclip ... ok
[INFO] [stdout] test output::fastq::tests::test_fastq_write_empty_read ... ok
[INFO] [stdout] test output::fastq::tests::test_fastq_write_and_read_back ... ok
[INFO] [stdout] test ploidy::tests::test_multiple_contigs_and_ranges ... ok
[INFO] [stdout] test haplotype::tests::test_variant_at_position_zero ... ok
[INFO] [stdout] test read::tests::test_cigar_all_adapter ... ok
[INFO] [stdout] test read::tests::test_cigar_high_positions ... ok
[INFO] [stdout] test read::tests::test_cigar_single_base ... ok
[INFO] [stdout] test ploidy::tests::test_last_writer_wins ... ok
[INFO] [stdout] test read::tests::test_cigar_with_adapter_and_deletion ... ok
[INFO] [stdout] test read::tests::test_cigar_with_adapter_softclip_negative_strand ... ok
[INFO] [stdout] test read::tests::test_cigar_with_deletion ... ok
[INFO] [stdout] test read::tests::test_cigar_with_adapter_softclip_forward ... ok
[INFO] [stdout] test read::tests::test_cigar_all_match ... ok
[INFO] [stdout] test read::tests::test_cigar_with_insertion_and_deletion ... ok
[INFO] [stdout] test read_naming::tests::test_encoded_se_name ... ok
[INFO] [stdout] test read::tests::test_cigar_with_insertion ... ok
[INFO] [stdout] test read::tests::test_quality_scores_correct_length ... ok
[INFO] [stdout] test read_naming::tests::test_parse_invalid_names ... ok
[INFO] [stdout] test read::tests::test_generate_pe_read_pair ... ok
[INFO] [stdout] test read::tests::test_generate_se_read ... ok
[INFO] [stdout] test read_naming::tests::test_parse_pe_with_colon_in_contig ... ok
[INFO] [stdout] test read_naming::tests::test_cross_format_rejection ... ok
[INFO] [stdout] test read_naming::tests::test_parse_pe_roundtrip ... ok
[INFO] [stdout] test read_naming::tests::test_parse_pos_strand ... ok
[INFO] [stdout] test read_naming::tests::test_parse_se_roundtrip ... ok
[INFO] [stdout] test read_naming::tests::test_parse_se_with_colon_in_contig ... ok
[INFO] [stdout] test read_naming::tests::test_short_fragment_encodes_adapter_boundary ... ok
[INFO] [stdout] test read_naming::tests::test_simple_name ... ok
[INFO] [stdout] test seed::tests::test_compute_seed_deterministic ... ok
[INFO] [stdout] test read::tests::test_simple_name_mode ... ok
[INFO] [stdout] test read_naming::tests::test_encoded_pe_name ... ok
[INFO] [stdout] test sequence_dict::tests::test_index_by_str ... ok
[INFO] [stdout] test seed::tests::test_compute_seed_different_inputs ... ok
[INFO] [stdout] test sequence_dict::tests::test_get_by_index ... ok
[INFO] [stdout] test seed::tests::test_resolve_seed_derived ... ok
[INFO] [stdout] test seed::tests::test_compute_seed_known_value ... ok
[INFO] [stdout] test sequence_dict::tests::test_index_by_usize ... ok
[INFO] [stdout] test sequence_dict::tests::test_iter ... ok
[INFO] [stdout] test sequence_dict::tests::test_len_and_is_empty ... ok
[INFO] [stdout] test sequence_dict::tests::test_names ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_diploid_hom_alt ... ok
[INFO] [stdout] test sequence_dict::tests::test_total_length ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_diploid_phased_het ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_diploid_hom_ref ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_diploid_unphased_het ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_haploid ... ok
[INFO] [stdout] test sequence_dict::tests::test_get_by_name ... ok
[INFO] [stdout] test seed::tests::test_resolve_seed_explicit ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_missing_alleles ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_triploid ... ok
[INFO] [stdout] test vcf::genotype::tests::test_variant_record_allele_bases ... ok
[INFO] [stdout] test error_model::illumina::tests::test_min_gt_max_panics - should panic ... ok
[INFO] [stdout] test bed::tests::test_error_end_exceeds_contig_length ... ok
[INFO] [stdout] test error_model::illumina::tests::test_zero_read_length_panics - should panic ... ok
[INFO] [stdout] test fasta::tests::test_load_contig_unknown ... ok
[INFO] [stdout] test read_naming::tests::test_formatter_rejects_at_in_contig_se - should panic ... ok
[INFO] [stdout] test read_naming::tests::test_formatter_rejects_double_colon_in_contig_pe - should panic ... ok
[INFO] [stdout] test sequence_dict::tests::test_index_by_str_unknown - should panic ... ok
[INFO] [stdout] test sequence_dict::tests::test_index_by_usize_out_of_bounds - should panic ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_invalid_allele_errors ... ok
[INFO] [stdout] test ploidy::tests::test_parse_errors ... ok
[INFO] [stdout] test vcf::genotype::tests::test_parse_empty_errors ... ok
[INFO] [stdout] test bed::tests::test_effective_territory_single_target ... ok
[INFO] [stdout] test bed::tests::test_sampler_keeps_disjoint_padded_intervals_separate ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 132 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.17s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/holodeck-29856a4ea343d6e1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_eval.rs (/opt/rustwide/target/debug/deps/test_eval-3cb91cf9acaea83b)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_eval_all_unmapped ... ok
[INFO] [stdout] test test_eval_perfect_alignment ... ok
[INFO] [stdout] test test_eval_wiggle_parameter ... ok
[INFO] [stdout] test test_eval_perfect_alignment_paired_end ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.37s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_mutate.rs (/opt/rustwide/target/debug/deps/test_mutate-de93f43fdf74cc42)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test test_mutate_basic ... ok
[INFO] [stdout] test test_mutate_snp_only ... ok
[INFO] [stdout] test test_mutate_with_bed_targets ... ok
[INFO] [stdout] test test_mutate_seed_reproducibility ... ok
[INFO] [stdout] test test_mutate_ploidy_override ... ok
[INFO] [stdout] test test_mutate_rates_respected ... ok
[INFO] [stderr]      Running tests/test_simulate.rs (/opt/rustwide/target/debug/deps/test_simulate-4a83130707f59ab3)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.38s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 41 tests
[INFO] [stdout] test test_golden_bam_read_group_uses_vcf_sample_name ... ok
[INFO] [stdout] test test_multi_sample_vcf_with_correct_sample_works ... ok
[INFO] [stdout] test test_output_directory_does_not_exist_fails ... ok
[INFO] [stdout] test test_multi_sample_vcf_without_sample_flag_fails ... ok
[INFO] [stdout] test test_fragment_length_identifies_adapter_boundary ... ok
[INFO] [stdout] test test_adapter_content_short_fragments ... ok
[INFO] [stdout] test test_simulate_basic_pe ... ok
[INFO] [stdout] test test_simulate_golden_bam ... ok
[INFO] [stdout] test test_sample_without_vcf_fails ... ok
[INFO] [stdout] test test_simulate_seed_reproducibility ... ok
[INFO] [stdout] test test_simulate_reads_overlap_targets ... ok
[INFO] [stdout] test test_simulate_single_end ... ok
[INFO] [stdout] test test_simulate_simple_names ... ok
[INFO] [stdout] test test_simulate_sparse_targets_produce_expected_reads ... ok
[INFO] [stdout] test test_simulate_then_eval ... ok
[INFO] [stdout] test test_simulate_very_short_contig ... ok
[INFO] [stdout] test test_simulate_with_bed_targets ... ok
[INFO] [stdout] test test_single_sample_vcf_without_sample_flag_works ... ok
[INFO] [stdout] test test_simulate_vcf_plus_bed ... ok
[INFO] [stdout] test test_multi_contig_read_distribution ... ok
[INFO] [stdout] test test_mutate_then_simulate ... ok
[INFO] [stdout] test test_simulate_error_rate_introduces_mismatches ... ok
[INFO] [stdout] test test_phased_variant_cluster_trans ... ok
[INFO] [stdout] test test_deletion_pileup ... ok
[INFO] [stdout] test test_targeted_coverage_matches_requested ... ok
[INFO] [stdout] test test_wrong_sample_name_fails ... ok
[INFO] [stdout] test test_snp_hom_alt_pileup ... ok
[INFO] [stdout] test test_phased_snp_and_insertion_cluster ... ok
[INFO] [stdout] test test_phased_variant_cluster_cis ... ok
[INFO] [stdout] test test_phased_snp_and_deletion_cluster ... ok
[INFO] [stdout] test test_insertion_pileup ... ok
[INFO] [stdout] test test_zero_error_rate_reads_match_reference ... ok
[INFO] [stdout] test test_multiple_variants_same_contig ... ok
[INFO] [stdout] test test_wgs_coverage_accuracy ... ok
[INFO] [stdout] test test_simulate_multiple_contigs_with_variants ... ok
[INFO] [stdout] test test_multi_allelic_site ... ok
[INFO] [stdout] test test_het_insertion_pileup ... ok
[INFO] [stdout] test test_snp_phased_het_pileup ... ok
[INFO] [stdout] test test_het_deletion_pileup ... ok
[INFO] [stdout] test test_unphased_variant_cluster ... ok
[INFO] [stdout] test test_unphased_het_snp_pileup ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 41 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 21.97s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests holodeck_lib
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0bf17674c1816294a5734f7891322a95b8633140776ea17ffae8ebb93a7e1704", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0bf17674c1816294a5734f7891322a95b8633140776ea17ffae8ebb93a7e1704", kill_on_drop: false }`
[INFO] [stdout] 0bf17674c1816294a5734f7891322a95b8633140776ea17ffae8ebb93a7e1704
