[INFO] fetching crate orphos-core 0.2.0...
[INFO] testing orphos-core-0.2.0 against 1.95.0 for beta-1.96-2
[INFO] extracting crate orphos-core 0.2.0 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate orphos-core 0.2.0
[INFO] finished tweaking crates.io crate orphos-core 0.2.0
[INFO] tweaked toml for crates.io crate orphos-core 0.2.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate orphos-core 0.2.0 on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate orphos-core 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6c9bb69f0ac3a25b512197fee0f8f52c5bd9808441abe2541dbef3d675862cf0
[INFO] running `Command { std: "docker" "start" "-a" "6c9bb69f0ac3a25b512197fee0f8f52c5bd9808441abe2541dbef3d675862cf0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6c9bb69f0ac3a25b512197fee0f8f52c5bd9808441abe2541dbef3d675862cf0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6c9bb69f0ac3a25b512197fee0f8f52c5bd9808441abe2541dbef3d675862cf0", kill_on_drop: false }`
[INFO] [stdout] 6c9bb69f0ac3a25b512197fee0f8f52c5bd9808441abe2541dbef3d675862cf0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 94cc6a53bec0b6cfa85d29b9eec1fd9c37ff4f77f6f08ab48503b41094b2ecf8
[INFO] running `Command { std: "docker" "start" "-a" "94cc6a53bec0b6cfa85d29b9eec1fd9c37ff4f77f6f08ab48503b41094b2ecf8", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling zerocopy v0.8.25
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bytemuck v1.23.0
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling hashbrown v0.15.3
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling petgraph v0.8.1
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling orphos-core v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 12s
[INFO] running `Command { std: "docker" "inspect" "94cc6a53bec0b6cfa85d29b9eec1fd9c37ff4f77f6f08ab48503b41094b2ecf8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "94cc6a53bec0b6cfa85d29b9eec1fd9c37ff4f77f6f08ab48503b41094b2ecf8", kill_on_drop: false }`
[INFO] [stdout] 94cc6a53bec0b6cfa85d29b9eec1fd9c37ff4f77f6f08ab48503b41094b2ecf8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5ebafd9823af7d95e0bba1f13f8870f73dc76dd49bc557d85e7734705145cfe4
[INFO] running `Command { std: "docker" "start" "-a" "5ebafd9823af7d95e0bba1f13f8870f73dc76dd49bc557d85e7734705145cfe4", kill_on_drop: false }`
[INFO] [stderr]    Compiling orphos-core v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 9.63s
[INFO] running `Command { std: "docker" "inspect" "5ebafd9823af7d95e0bba1f13f8870f73dc76dd49bc557d85e7734705145cfe4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5ebafd9823af7d95e0bba1f13f8870f73dc76dd49bc557d85e7734705145cfe4", kill_on_drop: false }`
[INFO] [stdout] 5ebafd9823af7d95e0bba1f13f8870f73dc76dd49bc557d85e7734705145cfe4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] aa3abce46b7587363bb009aac227e281a39fdddc53c025cbcb4d4e064ce19147
[INFO] running `Command { std: "docker" "start" "-a" "aa3abce46b7587363bb009aac227e281a39fdddc53c025cbcb4d4e064ce19147", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/orphos_core-e344c654f7b55402)
[INFO] [stdout] 
[INFO] [stdout] running 435 tests
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_calculate_distance_constraints_small_index ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_calculate_distance_constraints_large_index ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_compute_dynamic_programming_scores_empty ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_find_maximum_terminal_node_forward_stops ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_find_maximum_terminal_node_negative_scores ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_find_maximum_terminal_node_reverse_starts ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_find_maximum_terminal_node_no_terminals ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_initialize_nodes ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_predict_genes_empty_nodes ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_predict_genes_with_forward_pointers ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_setup_forward_pointers_simple_chain ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_setup_forward_pointers_single_node ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_predict_genes_single_node ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_predict_genes_simple_forward_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_reverse_stop_to_reverse_stop ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_simple_overlaps_forward_stop_to_forward_stop ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_predict_genes_reverse_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_simple_overlaps_no_matching_patterns ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_setup_forward_pointers_complex_chain ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_forward_stop_to_forward_stop ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_simple_overlaps_empty_path ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_simple_overlaps_reverse_start_to_forward_stop ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_triple_overlaps_valid_case ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_triple_overlaps_empty_path ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_triple_overlaps_no_overlap_needed ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_should_resolve_triple_overlap_true ... ok
[INFO] [stdout] test algorithms::dynamic_programming::gene_prediction::tests::test_compute_dynamic_programming_scores_single_node ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_simple_overlaps_reverse_stop_to_reverse_stop ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_resolve_single_triple_overlap_with_bounds_checking ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_add_intergenic_bonuses_forward_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_should_resolve_triple_overlap_false_no_overlap_marker ... ok
[INFO] [stdout] test algorithms::dynamic_programming::overlap_resolution::tests::test_should_resolve_triple_overlap_false_wrong_strands ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_add_intergenic_bonuses_reverse_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_none_input ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_negative_forward_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_find_path_start_chain ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_out_of_bounds_protection ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_gene_pair ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_negative_reverse_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_positive_scores ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_complex_path ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_mark_bad_genes_for_elimination_forward_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_mark_bad_genes_for_elimination_reverse_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_mark_bad_genes_no_elimination_needed ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_should_eliminate_gene_negative ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_should_eliminate_gene_mixed_scores ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_should_eliminate_gene_positive ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_connection_type_debug_impl ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_should_eliminate_gene_zero ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_five_reverse_to_five_forward ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_connection_type_equality ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_forward_operon ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_forward_intergenic ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_eliminate_bad_genes_single_node ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_invalid_patterns ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_overlapping_opposite ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_reverse_intergenic ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_triple_overlap ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_determine_connection_type_reverse_operon ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_has_edge_artifacts_reverse_start_no_traceback ... ok
[INFO] [stdout] test algorithms::dynamic_programming::path_optimization::tests::test_find_path_start_single_node ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_has_edge_artifacts_forward_stop_no_traceback ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_has_edge_artifacts_reverse_stop ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_has_edge_artifacts_reverse_start_with_traceback ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_has_edge_artifacts_forward_start ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::connection_types::tests::test_has_edge_artifacts_forward_stop_with_traceback ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_calculate_gc_score_with_weights ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_calculate_gc_score ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_five_reverse_to_five_forward ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_forward_intergenic ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_forward_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_connection_type_determination ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_different_node_scores_affect_total ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_distance_affects_processing ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_connection_state_new ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_edge_artifacts_detection ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_forward_operon ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_invalid_type_ignored ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_overlapping_opposite ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_reverse_gene ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_with_flag_true ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_reverse_intergenic ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_strand_specific_processing ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_start_codon_types_handled ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_reverse_operon ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_triple_overlap ... ok
[INFO] [stdout] test algorithms::dynamic_programming::scoring::handlers::tests::test_score_connection_with_flag_false ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_calculate_confidence_high_score ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_calculate_confidence_boundary_score ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_is_partial_left_false ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_is_partial_left_reverse_edge_stop ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_is_partial_left_forward_edge_start ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_is_partial_right_reverse_edge_start ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_calculate_confidence_zero_score ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_rbs_motif_and_spacer_equal_scores ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_calculate_confidence_negative_score ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_rbs_motif_and_spacer_second_higher ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_rbs_motif_and_spacer_boundary_index ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_basic_forward ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_all_partial_combinations ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_edge_gene ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_non_sd_no_motif ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_high_confidence ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_non_sd_with_motif ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_broken_trace_forward_chain ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_reverse_gene ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_non_sd_mode ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_different_codon_types ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_coordinate_calculation ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_empty_path ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_gene_expansion ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_max_genes_limit ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_incomplete_forward_gene ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_incomplete_reverse_gene ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_mixed_strand_genes ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_multiple_reverse_genes ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_multiple_forward_genes ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_single_forward_gene ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_no_traceback_path ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_single_reverse_gene ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_stop_codon_only ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_record_gene_annotation_and_score_non_sd_with_rbs ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_with_eliminated_nodes ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_traceback_to_beginning ... ok
[INFO] [stdout] test algorithms::gene_finding::creation::tests::test_add_genes_unknown_strand ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_is_partial_right_false ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_is_partial_right_forward_edge_stop ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_rbs_motif_and_spacer_first_higher ... ok
[INFO] [stdout] test algorithms::gene_finding::annotation::tests::test_calculate_confidence_low_score ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_both_unknown_strand ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_forward_forward ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_forward_reverse ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_reverse_forward ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_reverse_reverse ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_unknown_strand_current ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_unknown_strand_prev ... ok
[INFO] [stdout] test bitmap::tests::test_calculate_bit_position ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_with_different_codon_types ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_scored_alternative_debug_impl ... ok
[INFO] [stdout] test bitmap::tests::test_bit_operations_consistency ... ok
[INFO] [stdout] test bitmap::tests::test_edge_cases ... ok
[INFO] [stdout] test bitmap::tests::test_clear_bit ... ok
[INFO] [stdout] test bitmap::tests::test_set_bit ... ok
[INFO] [stdout] test bitmap::tests::test_test_bit ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_with_edge_nodes ... ok
[INFO] [stdout] test bitmap::tests::test_toggle_bit ... ok
[INFO] [stdout] test engine::tests::test_analyze_empty_sequence ... ok
[INFO] [stdout] test engine::tests::test_analyze_fasta_file_not_found ... ok
[INFO] [stdout] test algorithms::gene_finding::scoring::tests::test_calculate_intergenic_score_with_different_training_weights ... ok
[INFO] [stdout] test engine::tests::test_analyze_very_short_sequence ... ok
[INFO] [stdout] test engine::tests::test_config_cloning ... ok
[INFO] [stdout] test engine::tests::test_debug_formatting ... ok
[INFO] [stdout] test engine::tests::test_error_handling_edge_cases ... ok
[INFO] [stdout] test engine::tests::test_orphos_analyzer_new ... ok
[INFO] [stderr] 
[INFO] [stderr] thread 'engine::tests::test_analyze_fasta_file_single_genome' (167) has overflowed its stack
[INFO] [stderr] fatal runtime error: stack overflow, aborting
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/orphos_core-e344c654f7b55402` (signal: 6, SIGABRT: process abort signal)
[INFO] running `Command { std: "docker" "inspect" "aa3abce46b7587363bb009aac227e281a39fdddc53c025cbcb4d4e064ce19147", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa3abce46b7587363bb009aac227e281a39fdddc53c025cbcb4d4e064ce19147", kill_on_drop: false }`
[INFO] [stdout] aa3abce46b7587363bb009aac227e281a39fdddc53c025cbcb4d4e064ce19147
