[INFO] fetching crate rust-bio-tools 0.42.2...
[INFO] testing rust-bio-tools-0.42.2 against beta-2026-04-21 for beta-1.96-2
[INFO] extracting crate rust-bio-tools 0.42.2 into /workspace/builds/worker-5-tc2/source
[INFO] removed /workspace/builds/worker-5-tc2/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.42.2
[INFO] finished tweaking crates.io crate rust-bio-tools 0.42.2
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.42.2 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate rust-bio-tools 0.42.2 on toolchain beta-2026-04-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rust-bio-tools 0.42.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] badfaa4aaec179e5bf6e86133e3457b4a5ab3baf8ecc538e776dbd5c8aa42fda
[INFO] running `Command { std: "docker" "start" "-a" "badfaa4aaec179e5bf6e86133e3457b4a5ab3baf8ecc538e776dbd5c8aa42fda", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "badfaa4aaec179e5bf6e86133e3457b4a5ab3baf8ecc538e776dbd5c8aa42fda", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "badfaa4aaec179e5bf6e86133e3457b4a5ab3baf8ecc538e776dbd5c8aa42fda", kill_on_drop: false }`
[INFO] [stdout] badfaa4aaec179e5bf6e86133e3457b4a5ab3baf8ecc538e776dbd5c8aa42fda
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 32a1dc200b85c47e429a7fdc008f718c4fd0eac7c559d2aa80a7bb4e61922eaa
[INFO] running `Command { std: "docker" "start" "-a" "32a1dc200b85c47e429a7fdc008f718c4fd0eac7c559d2aa80a7bb4e61922eaa", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling either v1.10.0
[INFO] [stderr]    Compiling futures v0.1.31
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling clang-sys v1.7.0
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling autocfg v0.1.8
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling slab v0.4.9
[INFO] [stderr]    Compiling libloading v0.8.3
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling unicode-bidi v0.3.15
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling unicode-normalization v0.1.23
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling parking_lot_core v0.6.3
[INFO] [stderr]    Compiling parking_lot v0.9.0
[INFO] [stderr]    Compiling smallvec v0.6.14
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling matches v0.1.10
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling hashbrown v0.14.3
[INFO] [stderr]    Compiling prettyplease v0.2.17
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]    Compiling jobserver v0.1.28
[INFO] [stderr]    Compiling iovec v0.1.4
[INFO] [stderr]    Compiling getrandom v0.2.14
[INFO] [stderr]    Compiling bytes v0.4.12
[INFO] [stderr]    Compiling tokio-executor v0.1.10
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling indexmap v2.2.6
[INFO] [stderr]    Compiling net2 v0.2.39
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling lock_api v0.3.4
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling tokio-io v0.1.13
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling ryu v1.0.17
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling mio v0.6.23
[INFO] [stderr]    Compiling tokio-sync v0.1.8
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling unicase v2.7.0
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling openssl-src v300.2.3+3.2.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling serde_json v1.0.115
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bindgen v0.64.0
[INFO] [stderr]    Compiling miniz_oxide v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bindgen v0.65.1
[INFO] [stderr]    Compiling tokio-reactor v0.1.12
[INFO] [stderr]    Compiling crossbeam-deque v0.7.4
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling http v0.1.21
[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]    Compiling openssl-sys v0.9.102
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]    Compiling zstd-sys v2.0.10+zstd.1.5.6
[INFO] [stderr]    Compiling curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling backtrace v0.3.71
[INFO] [stderr]    Compiling num-complex v0.4.5
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling idna v0.5.0
[INFO] [stderr]    Compiling crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-xid v0.2.4
[INFO] [stderr]    Compiling httparse v1.8.0
[INFO] [stderr]    Compiling iana-time-zone v0.1.60
[INFO] [stderr]    Compiling unicode-width v0.1.11
[INFO] [stderr]    Compiling openssl v0.10.64
[INFO] [stderr]    Compiling unicode-segmentation v1.11.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling gimli v0.28.1
[INFO] [stderr]    Compiling percent-encoding v1.0.1
[INFO] [stderr]    Compiling url v1.7.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling url v2.5.0
[INFO] [stderr]    Compiling chrono v0.4.37
[INFO] [stderr]    Compiling chrono-tz-build v0.2.1
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling tokio-threadpool v0.1.18
[INFO] [stderr]    Compiling tokio-tcp v0.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling tokio-buf v0.1.1
[INFO] [stderr]    Compiling string v0.2.1
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling tokio-timer v0.2.13
[INFO] [stderr]    Compiling tokio-current-thread v0.1.7
[INFO] [stderr]    Compiling hyper v0.12.36
[INFO] [stderr]    Compiling object v0.32.2
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling rustc-demangle v0.1.23
[INFO] [stderr]    Compiling native-tls v0.2.11
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling openssl-macros v0.1.1
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling chrono-tz v0.8.6
[INFO] [stderr]    Compiling globset v0.4.14
[INFO] [stderr]    Compiling tokio v0.1.22
[INFO] [stderr]    Compiling want v0.2.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling addr2line v0.21.0
[INFO] [stderr]    Compiling mime_guess v2.0.4
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling h2 v0.1.26
[INFO] [stderr]    Compiling http-body v0.1.0
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling futures-cpupool v0.1.8
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling pest v2.7.9
[INFO] [stderr]    Compiling rand_jitter v0.1.4
[INFO] [stderr]    Compiling GSL-sys v3.0.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling openssl-probe v0.1.5
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling publicsuffix v1.5.6
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling ignore v0.4.22
[INFO] [stderr]    Compiling unic-ucd-segment v0.9.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling cookie v0.12.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr] error: could not compile `bindgen` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/beta-2026-04-21-x86_64-unknown-linux-gnu/bin/rustc --crate-name bindgen --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bindgen-0.65.1/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="log"' --cfg 'feature="logging"' --cfg 'feature="runtime"' --cfg 'feature="which"' --cfg 'feature="which-rustfmt"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("__cli", "annotate-snippets", "default", "experimental", "log", "logging", "runtime", "static", "testing_only_extra_assertions", "testing_only_libclang_5", "testing_only_libclang_9", "which", "which-rustfmt"))' -C metadata=b5acb2ee8de2ab4f -C extra-filename=-4575d0fff9c79635 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-a9851ebd0ab18f47.rmeta --extern cexpr=/opt/rustwide/target/debug/deps/libcexpr-9d33a31e656f1a70.rmeta --extern clang_sys=/opt/rustwide/target/debug/deps/libclang_sys-5eb4c4b2416ed94c.rmeta --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-8f54c7c82e1daacf.rmeta --extern lazycell=/opt/rustwide/target/debug/deps/liblazycell-62fb52ee61162bb7.rmeta --extern log=/opt/rustwide/target/debug/deps/liblog-f788aff488a37349.rmeta --extern peeking_take_while=/opt/rustwide/target/debug/deps/libpeeking_take_while-2d8bc14a10a8b49e.rmeta --extern prettyplease=/opt/rustwide/target/debug/deps/libprettyplease-a908da61546c471b.rmeta --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-c82e9c802cc53c9c.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-a7425fdc30ea4638.rmeta --extern regex=/opt/rustwide/target/debug/deps/libregex-5a87dab521df1185.rmeta --extern rustc_hash=/opt/rustwide/target/debug/deps/librustc_hash-0f54702d2e2b6438.rmeta --extern shlex=/opt/rustwide/target/debug/deps/libshlex-459ce6780ac1fd8f.rmeta --extern syn=/opt/rustwide/target/debug/deps/libsyn-291f732f5962249b.rmeta --extern which=/opt/rustwide/target/debug/deps/libwhich-e6f9f2e908ab750b.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "32a1dc200b85c47e429a7fdc008f718c4fd0eac7c559d2aa80a7bb4e61922eaa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "32a1dc200b85c47e429a7fdc008f718c4fd0eac7c559d2aa80a7bb4e61922eaa", kill_on_drop: false }`
[INFO] [stdout] 32a1dc200b85c47e429a7fdc008f718c4fd0eac7c559d2aa80a7bb4e61922eaa
