[INFO] fetching crate rsabpoa 0.3.7...
[INFO] testing rsabpoa-0.3.7 against 1.95.0 for beta-1.96-2
[INFO] extracting crate rsabpoa 0.3.7 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate rsabpoa 0.3.7
[INFO] finished tweaking crates.io crate rsabpoa 0.3.7
[INFO] tweaked toml for crates.io crate rsabpoa 0.3.7 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rsabpoa 0.3.7 on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rsabpoa 0.3.7 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded quote v1.0.39
[INFO] [stderr]   Downloaded sha1_smol v1.0.1
[INFO] [stderr]   Downloaded serde v1.0.218
[INFO] [stderr]   Downloaded bytecount v0.6.8
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded multimap v0.10.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded windows-link v0.1.0
[INFO] [stderr]   Downloaded serde_derive v1.0.218
[INFO] [stderr]   Downloaded csv-core v0.1.12
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded clap_derive v4.5.28
[INFO] [stderr]   Downloaded clap v4.5.31
[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.22
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.14
[INFO] [stderr]   Downloaded cc v1.2.16
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded clap_builder v4.5.31
[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] [stderr]   Downloaded portable-atomic v1.11.0
[INFO] [stderr]   Downloaded rand v0.9.0
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded syn v2.0.99
[INFO] [stderr]   Downloaded indicatif v0.17.11
[INFO] [stderr]   Downloaded openssl-sys v0.9.106
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded bytemuck v1.22.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded uuid v1.15.1
[INFO] [stderr]   Downloaded once_cell v1.20.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded gskits v0.13.2
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded zerocopy v0.8.22
[INFO] [stderr]   Downloaded ordered-float v5.0.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded libc v0.2.170
[INFO] [stderr]   Downloaded bindgen v0.69.5
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded libz-sys v1.1.21
[INFO] [stderr]   Downloaded csv v1.3.1
[INFO] [stderr]   Downloaded curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded cmake v0.1.54
[INFO] [stderr]   Downloaded openssl-src v300.4.2+3.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0a88a9193c4b5c571592ad0249af3880466f6a4a542cc41f56e912b5820e5b38
[INFO] running `Command { std: "docker" "start" "-a" "0a88a9193c4b5c571592ad0249af3880466f6a4a542cc41f56e912b5820e5b38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0a88a9193c4b5c571592ad0249af3880466f6a4a542cc41f56e912b5820e5b38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0a88a9193c4b5c571592ad0249af3880466f6a4a542cc41f56e912b5820e5b38", kill_on_drop: false }`
[INFO] [stdout] 0a88a9193c4b5c571592ad0249af3880466f6a4a542cc41f56e912b5820e5b38
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c62a58d143d0b62514d17324cd79560bd8d9d061f766d311199bb388d3082198
[INFO] running `Command { std: "docker" "start" "-a" "c62a58d143d0b62514d17324cd79560bd8d9d061f766d311199bb388d3082198", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.170
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling quote v1.0.39
[INFO] [stderr]    Compiling litemap v0.7.5
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling serde v1.0.218
[INFO] [stderr]    Compiling syn v2.0.99
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.20
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling getrandom v0.3.1
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling typenum v1.18.0
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling cc v1.2.16
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling smallvec v1.14.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling openssl-src v300.4.2+3.4.1
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.106
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling zerocopy v0.8.22
[INFO] [stderr]    Compiling once_cell v1.20.3
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.7.5
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.218
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling zerovec v0.10.4
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling tinystr v0.7.6
[INFO] [stderr]    Compiling icu_locid v1.5.0
[INFO] [stderr]    Compiling icu_collections v1.5.0
[INFO] [stderr]    Compiling icu_provider v1.5.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling anyhow v1.0.97
[INFO] [stderr]    Compiling portable-atomic v1.11.0
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling icu_properties v1.5.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling indexmap v2.7.1
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling form_urlencoded v1.2.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling unicode-width v0.2.0
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling rand v0.9.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling sha1_smol v1.0.1
[INFO] [stderr]    Compiling iana-time-zone v0.1.61
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling uuid v1.15.1
[INFO] [stderr]    Compiling clap_builder v4.5.31
[INFO] [stderr]    Compiling chrono v0.4.40
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling clap_derive v4.5.28
[INFO] [stderr]    Compiling crossbeam-channel v0.5.14
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling rsabpoa v0.3.7 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling clap v4.5.31
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling rust-htslib v0.49.0
[INFO] [stderr]    Compiling gskits v0.13.2
[INFO] [stdout] warning: type `__off_t` should have an upper camel case name
[INFO] [stdout]   --> src/abpoa_sys.rs:83:10
[INFO] [stdout]    |
[INFO] [stdout] 83 | pub type __off_t = ::std::os::raw::c_long;
[INFO] [stdout]    |          ^^^^^^^ help: convert the identifier to upper camel case: `OffT`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_camel_case_types)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `__off64_t` should have an upper camel case name
[INFO] [stdout]   --> src/abpoa_sys.rs:84:10
[INFO] [stdout]    |
[INFO] [stdout] 84 | pub type __off64_t = ::std::os::raw::c_long;
[INFO] [stdout]    |          ^^^^^^^^^ help: convert the identifier to upper camel case: `Off64T`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `__m128i` should have an upper camel case name
[INFO] [stdout]   --> src/abpoa_sys.rs:85:10
[INFO] [stdout]    |
[INFO] [stdout] 85 | pub type __m128i = [::std::os::raw::c_longlong; 2usize];
[INFO] [stdout]    |          ^^^^^^^ help: convert the identifier to upper camel case: `M128i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `_IO_lock_t` should have an upper camel case name
[INFO] [stdout]    --> src/abpoa_sys.rs:102:10
[INFO] [stdout]     |
[INFO] [stdout] 102 | pub type _IO_lock_t = ::std::os::raw::c_void;
[INFO] [stdout]     |          ^^^^^^^^^^ help: convert the identifier to upper camel case: `IoLockT`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `abpoa_msa1`
[INFO] [stdout]  --> src/abpoa.rs:7:81
[INFO] [stdout]   |
[INFO] [stdout] 7 |         abpoa_generate_consensus, abpoa_generate_rc_msa, abpoa_init, abpoa_msa, abpoa_msa1,
[INFO] [stdout]   |                                                                                 ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_read_ptr` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:107:9
[INFO] [stdout]     |
[INFO] [stdout] 107 |     pub _IO_read_ptr: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_ptr`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_read_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:108:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |     pub _IO_read_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_read_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:109:9
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub _IO_read_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_write_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:110:9
[INFO] [stdout]     |
[INFO] [stdout] 110 |     pub _IO_write_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_write_ptr` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:111:9
[INFO] [stdout]     |
[INFO] [stdout] 111 |     pub _IO_write_ptr: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_ptr`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_write_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:112:9
[INFO] [stdout]     |
[INFO] [stdout] 112 |     pub _IO_write_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_buf_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:113:9
[INFO] [stdout]     |
[INFO] [stdout] 113 |     pub _IO_buf_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_buf_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:114:9
[INFO] [stdout]     |
[INFO] [stdout] 114 |     pub _IO_buf_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_save_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:115:9
[INFO] [stdout]     |
[INFO] [stdout] 115 |     pub _IO_save_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_backup_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:116:9
[INFO] [stdout]     |
[INFO] [stdout] 116 |     pub _IO_backup_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_backup_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_save_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:117:9
[INFO] [stdout]     |
[INFO] [stdout] 117 |     pub _IO_save_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `abpoa_consensus_dna`, `abpoa_free_para`, and `msa_with_adaptive_fwd_rev`
[INFO] [stdout]   --> src/bin/abpoa_consensus.rs:17:13
[INFO] [stdout]    |
[INFO] [stdout] 17 |     abpoa::{abpoa_consensus_dna, abpoa_consensus_dna_core, msa_with_adaptive_fwd_rev, AbpoaParam},
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^                            ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 18 |     abpoa_sys::{abpoa_free, abpoa_free_para, abpoa_init, abpoa_para_t, abpoa_t},
[INFO] [stdout]    |                             ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/opt/rustwide/target/debug/deps/rustcbHTg39/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librsabpoa-3d528e2b46338223,libgskits-ef53b68b7a3f0040,libnum_cpus-a054f515d44e9293,libuuid-b013c16ddc63766c,libsha1_smol-9aa3dbaff1ac63b9,libchrono-66161a94b1cedeea,libiana_time_zone-e7d8ac375b0183ef,libindicatif-8273769838b82c61,libportable_atomic-dbf575f460bb9cf2,libnumber_prefix-086a6b7a6316e9c1,libconsole-461086e317626090,libunicode_width-240d6bb8e5f02253,libonce_cell-f8ddf2aa81977c75,libbio-83b28a0350c3561c,libstrum-1576c7c5e43d3e10,libcsv-a29efad2d3a9a0d2,libryu-bb7ae9f204d4123c,libitoa-35925b7a8b5a945c,libcsv_core-25fac2194d705c70,libbytecount-116ee779bb88eff5,libtriple_accel-c5150c939b65c305,libeditdistancek-7bf7456bf8bf7540,libitertools_num-0b28e589df5edf09,libenum_map-9393726fe242f4d3,libstatrs-441e4c2f51ad3d88,libnalgebra-5b58ce017ee11bc0,librand_distr-6c1833e8e690b360,libnum_rational-3f693e64559ad712,libtypenum-6d6c2fc3f1711c63,libsimba-3563ad6ca71d11a1,libwide-54240ef58a6e1788,libsafe_arch-825f1271251fae57,libbytemuck-ee2dc28cfb175eb9,librand-185340897c2bf47f,librand_chacha-f26b7ef27c165416,libppv_lite86-0d69da365647f892,libzerocopy-8d49b71b850b1894,librand_core-f22781c8181497a9,libgetrandom-a7413b3f34e7eb71,libcfg_if-cfb20768436a17c8,libordered_float-771d285b94278bbf,libndarray-30b37711a93725eb,libmatrixmultiply-ab6a7cd488cf60bf,libnum_complex-697265a378b9debd,librawpointer-53e32c6b3d33cac1,libmultimap-e2d061adfbd00c04,libitertools-d7460268658b7504,libeither-0fdf45b61f79f227,libanyhow-73b62e17404a2543,libnum_integer-6640a0a6b79d18c6,libbv-6e7b1cdc3b89cacc,libvec_map-b89980fc32b283fa,libserde-fcae9aad8f6d6a6d,libbit_set-0889eff45e1bc1da,libbit_vec-f566b4b7b328c955,libfxhash-bdc59dec4b0978b4,libpetgraph-f7b3f6287ae0569a,libindexmap-68b94afe18ae0cef,libequivalent-da934a6694ab360d,libhashbrown-0fbf5d7969e72995,libfixedbitset-97cce5f3b466412b,libapprox-7384c8ff6dc7d798,libnum_traits-8c6962438c5e71d3,librust_htslib-1189a9da5d701f11,libthiserror-2716ff08c0f5c840,libieee754-bce599178f37ac65,libhts_sys-496aedae564d1bbe,liblzma_sys-b56a680470d8de77,libcurl_sys-f5a65074d3dffcfc,libopenssl_sys-4b83b2d82ac60408,liblibz_sys-35dcd8042caa1730,liblibc-c0ad8ffec842e0f3,libbzip2_sys-aa6277bfdb77057b,liburl-54a6808a9f1d9376,libidna-28377cb2b00ab296,libidna_adapter-b14deb82dc8f394d,libicu_normalizer-2f601caa9f2e83c8,libicu_normalizer_data-4b5c44456cc627ca,libwrite16-15146d2aa47160d5,libutf8_iter-59a8409a508f6435,libutf16_iter-c1af3ddfa7e5f3a7,libsmallvec-ac6a16a9fe5c9fad,libicu_properties-87911c480e35bdae,libicu_properties_data-67051a8c54b1360e,libicu_locid_transform-fce9c711e87eabbc,libicu_locid_transform_data-9f3f28f86fe9fd7b,libicu_collections-6f25abb7b0c57f4a,libicu_provider-ae13d1c83c6e9c61,libicu_locid-de03c87fb180917c,liblitemap-971a17a30b375185,libtinystr-a2914632d7049894,libzerovec-9d642d87f74c616d,libwriteable-4c6ecafd704edc02,libyoke-1c27ca32723e2b40,libzerofrom-08bd95ea38dc4081,libstable_deref_trait-f21eb645b5f1a504,libform_urlencoded-0a9c0367da4d8032,libpercent_encoding-d7d56dba6fb6e7e3,libbio_types-e1e387f42b4cd5a8,libthiserror-0cc35edee7e1be40,libbyteorder-cb17835726abdeba,libregex-faeb0810fc82c414,libregex_automata-eb47df7e7857a90d,libaho_corasick-263c0431d6718244,libmemchr-4d9abfffaa21515b,libregex_syntax-b63f40d8dd8ed2c8,liblinear_map-e1729c5c37440b6a,liblazy_static-206e48a21956b6b1,libnewtype_derive-666e849a936d0315,libcustom_derive-36d1fce24eb69f4d,libcrossbeam-e6e66aa9ce1f38a0,libcrossbeam_deque-5bc5d3ee3a7ed2f5,libcrossbeam_channel-6d52352ed44f11dd,libcrossbeam_queue-fca879f79e495c4a,libcrossbeam_epoch-5ee520a167e2f5e7,libcrossbeam_utils-221bda15e85f264f,libclap-2ceacceb62a44fb2,libclap_builder-c0f8cf501018e6a2,libstrsim-e69344138c76bdcc,libanstream-a9911f16ba1d0e2e,libanstyle_query-a4fe07dbf01960a4,libis_terminal_polyfill-d06c3b86810c7d05,libcolorchoice-617e6b941dd5dc99,libanstyle_parse-6a59a2d328c436c6,libutf8parse-ad1e940ee00e2725,libclap_lex-d082d7fbd0eefef8,libanstyle-230ebda9d7fc0411}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lm" "-lz" "-lpthread" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/opt/rustwide/target/debug/deps/rustcbHTg39/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/rsabpoa-f9d2ded31c4ba5bd/out/abPOA-v1.5.3/lib" "-L" "/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-c3100b3b096ee868/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-b123bdc8d6afb284/out/build" "-L" "/opt/rustwide/target/debug/build/libz-sys-0fa6ffb33287cf61/out/lib" "-L" "/opt/rustwide/target/debug/build/openssl-sys-e6e6f107ec2e150e/out/openssl-build/install/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-fb504ae62495a4e1/out" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/abpoa_consensus-c8b005e686ea37ce" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: duplicate symbol: kvsprintf
[INFO] [stdout]           >>> defined at kstring.c:9 (src/kstring.c:9)
[INFO] [stdout]           >>>            kstring.o:(kvsprintf) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:143 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:143)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.kvsprintf+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: ksprintf
[INFO] [stdout]           >>> defined at kstring.c:28 (src/kstring.c:28)
[INFO] [stdout]           >>>            kstring.o:(ksprintf) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:178 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:178)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.ksprintf+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kstrtok
[INFO] [stdout]           >>> defined at kstring.c:38 (src/kstring.c:38)
[INFO] [stdout]           >>>            kstring.o:(kstrtok) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:188 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:188)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.kstrtok+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: ksplit_core
[INFO] [stdout]           >>> defined at kstring.c:66 (src/kstring.c:66)
[INFO] [stdout]           >>>            kstring.o:(ksplit_core) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:225 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:225)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.ksplit_core+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kgetline
[INFO] [stdout]           >>> defined at kstring.c:110 (src/kstring.c:110)
[INFO] [stdout]           >>>            kstring.o:(kgetline) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:271 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:271)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.kgetline+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kmemmem
[INFO] [stdout]           >>> defined at kstring.c:177 (src/kstring.c:177)
[INFO] [stdout]           >>>            kstring.o:(kmemmem) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:378 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:378)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.kmemmem+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kstrstr
[INFO] [stdout]           >>> defined at kstring.c:198 (src/kstring.c:198)
[INFO] [stdout]           >>>            kstring.o:(kstrstr) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:400 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:400)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.kstrstr+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kstrnstr
[INFO] [stdout]           >>> defined at kstring.c:203 (src/kstring.c:203)
[INFO] [stdout]           >>>            kstring.o:(kstrnstr) in archive /opt/rustwide/target/debug/deps/librsabpoa-3d528e2b46338223.rlib
[INFO] [stdout]           >>> defined at kstring.c:405 (/opt/rustwide/target/debug/build/hts-sys-44262f599be30c3e/out/htslib/kstring.c:405)
[INFO] [stdout]           >>>            3ea370b6431b1ca8-kstring.o:(.text.kstrnstr+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-496aedae564d1bbe.rlib
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rsabpoa` (bin "abpoa_consensus") due to 1 previous error; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "c62a58d143d0b62514d17324cd79560bd8d9d061f766d311199bb388d3082198", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c62a58d143d0b62514d17324cd79560bd8d9d061f766d311199bb388d3082198", kill_on_drop: false }`
[INFO] [stdout] c62a58d143d0b62514d17324cd79560bd8d9d061f766d311199bb388d3082198
