[INFO] fetching crate ref-solver 0.3.0...
[INFO] testing ref-solver-0.3.0 against beta-2026-04-21 for beta-1.96-2
[INFO] extracting crate ref-solver 0.3.0 into /workspace/builds/worker-4-tc2/source
[INFO] removed /workspace/builds/worker-4-tc2/source/.cargo/config.toml
[INFO] started tweaking crates.io crate ref-solver 0.3.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate ref-solver 0.3.0
[INFO] tweaked toml for crates.io crate ref-solver 0.3.0 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate ref-solver 0.3.0 on toolchain beta-2026-04-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate ref-solver 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b0aeec825dff457941bc5fb2213794bb77c2da0c2d8f87cd16c414c21561ba89
[INFO] running `Command { std: "docker" "start" "-a" "b0aeec825dff457941bc5fb2213794bb77c2da0c2d8f87cd16c414c21561ba89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b0aeec825dff457941bc5fb2213794bb77c2da0c2d8f87cd16c414c21561ba89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b0aeec825dff457941bc5fb2213794bb77c2da0c2d8f87cd16c414c21561ba89", kill_on_drop: false }`
[INFO] [stdout] b0aeec825dff457941bc5fb2213794bb77c2da0c2d8f87cd16c414c21561ba89
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4c9ef6579b07739b4f6414d5f9644129ee176cd5986f47e3c48380281f3406ff
[INFO] running `Command { std: "docker" "start" "-a" "4c9ef6579b07739b4f6414d5f9644129ee176cd5986f47e3c48380281f3406ff", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.105
[INFO] [stderr]    Compiling quote v1.0.43
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[INFO] [stderr]    Compiling parking_lot_core v0.9.12
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[INFO] [stderr]    Compiling typenum v1.19.0
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[INFO] [stderr]    Compiling pkg-config v0.3.32
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[INFO] [stderr]    Compiling tower-service v0.3.3
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling bstr v1.12.1
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[INFO] [stderr]    Compiling socket2 v0.6.1
[INFO] [stderr]    Compiling mio v1.1.1
[INFO] [stderr]    Compiling syn v2.0.114
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[INFO] [stderr]    Compiling flate2 v1.1.8
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]    Compiling zeroize v1.8.2
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[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling httpdate v1.0.3
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[INFO] [stderr]    Compiling mime v0.3.17
[INFO] [stderr]    Compiling rustls-pki-types v1.14.0
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[INFO] [stderr]    Compiling zerocopy v0.8.33
[INFO] [stderr]    Compiling tower-layer v0.3.3
[INFO] [stderr]    Compiling atomic-waker v1.1.2
[INFO] [stderr]    Compiling untrusted v0.9.0
[INFO] [stderr]    Compiling http-body v1.0.1
[INFO] [stderr]    Compiling http-body-util v0.1.3
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling rustls v0.23.37
[INFO] [stderr]    Compiling unicase v2.9.0
[INFO] [stderr]    Compiling ipnet v2.12.0
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[INFO] [stderr]    Compiling ring v0.17.14
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[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling indexmap v2.13.0
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[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling multer v3.1.0
[INFO] [stderr]    Compiling portable-atomic v1.13.0
[INFO] [stderr]    Compiling cpufeatures v0.2.17
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling webpki-roots v1.0.6
[INFO] [stderr]    Compiling raw-cpuid v11.6.0
[INFO] [stderr]    Compiling encoding_rs v0.8.35
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling crypto-common v0.1.7
[INFO] [stderr]    Compiling noodles-csi v0.41.0
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
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[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling sha2 v0.10.9
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[INFO] [stderr]    Compiling rustix v1.1.3
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[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling noodles-sam v0.67.0
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[INFO] [stderr]    Compiling serde_path_to_error v0.1.20
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling dashmap v6.1.0
[INFO] [stderr]    Compiling md-5 v0.10.6
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling noodles-fasta v0.46.0
[INFO] [stderr]    Compiling is-docker v0.2.0
[INFO] [stderr]    Compiling spinning_top v0.3.0
[INFO] [stderr]    Compiling no-std-compat v0.4.1
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[INFO] [stderr]    Compiling futures-timer v3.0.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
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[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling refget-digest v0.1.0
[INFO] [stderr]    Compiling matchit v0.8.4
[INFO] [stderr]    Compiling nonzero_ext v0.3.0
[INFO] [stderr]    Compiling strsim v0.11.1
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[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling web-time v1.1.0
[INFO] [stderr]    Compiling clap_builder v4.5.54
[INFO] [stderr]    Compiling sharded-slab v0.1.7
[INFO] [stderr]    Compiling is-wsl v0.4.0
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling noodles-vcf v0.69.0
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling thread_local v1.1.9
[INFO] [stderr]    Compiling iana-time-zone v0.1.64
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling nu-ansi-term v0.50.3
[INFO] [stderr]    Compiling pathdiff v0.2.3
[INFO] [stderr]    Compiling open v5.3.3
[INFO] [stderr]    Compiling noodles-bam v0.71.0
[INFO] [stderr]    Compiling governor v0.8.1
[INFO] [stderr]    Compiling md5 v0.7.0
[INFO] [stderr]    Compiling noodles-cram v0.72.0
[INFO] [stderr]    Compiling rustls-webpki v0.103.9
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling ref-solver v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: ref-solver@0.3.0: Validated catalog: 14 references, 24029 total contigs
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling tokio-macros v2.6.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling pin-project-internal v1.1.10
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling matchers v0.2.0
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling tokio v1.49.0
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.8.1
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling pin-project v1.1.10
[INFO] [stderr]    Compiling forwarded-header-value v0.1.1
[INFO] [stderr]    Compiling noodles v0.86.0
[INFO] [stderr]    Compiling zerovec v0.11.5
[INFO] [stderr]    Compiling zerotrie v0.2.3
[INFO] [stderr]    Compiling axum-core v0.5.6
[INFO] [stderr]    Compiling tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling tinystr v0.8.2
[INFO] [stderr]    Compiling potential_utf v0.1.4
[INFO] [stderr]    Compiling icu_collections v2.1.1
[INFO] [stderr]    Compiling icu_locale_core v2.1.1
[INFO] [stderr]    Compiling clap v4.5.54
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling refget-model v0.1.0
[INFO] [stderr]    Compiling chrono v0.4.42
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling icu_provider v2.1.1
[INFO] [stderr]    Compiling icu_properties v2.1.2
[INFO] [stderr]    Compiling icu_normalizer v2.1.1
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling hyper v1.8.1
[INFO] [stderr]    Compiling tokio-util v0.7.18
[INFO] [stderr]    Compiling tokio-rustls v0.26.4
[INFO] [stderr]    Compiling tower v0.5.3
[INFO] [stderr]    Compiling hyper-util v0.1.19
[INFO] [stderr]    Compiling tower-http v0.6.8
[INFO] [stderr]    Compiling hyper-rustls v0.27.7
[INFO] [stderr]    Compiling axum v0.8.8
[INFO] [stderr]    Compiling reqwest v0.12.28
[INFO] [stderr]    Compiling refget-client v0.1.0
[INFO] [stderr]    Compiling tower_governor v0.6.0
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 36s
[INFO] running `Command { std: "docker" "inspect" "4c9ef6579b07739b4f6414d5f9644129ee176cd5986f47e3c48380281f3406ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4c9ef6579b07739b4f6414d5f9644129ee176cd5986f47e3c48380281f3406ff", kill_on_drop: false }`
[INFO] [stdout] 4c9ef6579b07739b4f6414d5f9644129ee176cd5986f47e3c48380281f3406ff
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7cb7d2a26a5215cdcd242c146fb9147861153b6cb7600786e999ab9fc5ac77a6
[INFO] running `Command { std: "docker" "start" "-a" "7cb7d2a26a5215cdcd242c146fb9147861153b6cb7600786e999ab9fc5ac77a6", kill_on_drop: false }`
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr] warning: ref-solver@0.3.0: Validated catalog: 14 references, 24029 total contigs
[INFO] [stderr]    Compiling assert_cmd v2.1.2
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling matchers v0.2.0
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-csi v0.41.0
[INFO] [stderr]    Compiling noodles-fasta v0.46.0
[INFO] [stderr]    Compiling noodles-sam v0.67.0
[INFO] [stderr]    Compiling noodles-tabix v0.47.0
[INFO] [stderr]    Compiling noodles-vcf v0.69.0
[INFO] [stderr]    Compiling noodles-bam v0.71.0
[INFO] [stderr]    Compiling noodles-cram v0.72.0
[INFO] [stderr]    Compiling noodles v0.86.0
[INFO] [stderr]    Compiling ref-solver v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 43.78s
[INFO] running `Command { std: "docker" "inspect" "7cb7d2a26a5215cdcd242c146fb9147861153b6cb7600786e999ab9fc5ac77a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7cb7d2a26a5215cdcd242c146fb9147861153b6cb7600786e999ab9fc5ac77a6", kill_on_drop: false }`
[INFO] [stdout] 7cb7d2a26a5215cdcd242c146fb9147861153b6cb7600786e999ab9fc5ac77a6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] cccf9786bce079bfb119358f0113ce61348f9f7c5a55cab9d9cbf1d6835d1094
[INFO] running `Command { std: "docker" "start" "-a" "cccf9786bce079bfb119358f0113ce61348f9f7c5a55cab9d9cbf1d6835d1094", kill_on_drop: false }`
[INFO] [stderr] warning: ref-solver@0.3.0: Validated catalog: 14 references, 24029 total contigs
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.50s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ref_solver-f547f46cee64238a)
[INFO] [stdout] 
[INFO] [stdout] running 189 tests
[INFO] [stdout] test catalog::builder::tests::test_detect_assembly ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_conflict_detection ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_contig_assembly ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_no_download_url_preserves_contig_uri ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_single_input ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_contig_uri ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_no_species_preserves_contig_species ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_chm13_assembly_display ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_species_overrides_contig_species ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_no_assembly_preserves_contig_assembly ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_merge_with_aliases ... ok
[INFO] [stdout] test catalog::builder::tests::test_input_format_detection ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_index_by_md5 ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_get_distribution ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_index_by_name_length ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_empty_input ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_exact_match ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_no_match ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_partial_match ... ok
[INFO] [stdout] test catalog::index::tests::test_find_candidates_via_alias ... ok
[INFO] [stdout] test catalog::store::tests::test_alias_indexing ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_distinguishes_versions ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_standalone_distribution ... ok
[INFO] [stdout] test catalog::store::tests::test_add_reference ... ok
[INFO] [stdout] test cli::score::tests::test_compute_score_asymmetric ... ok
[INFO] [stdout] test cli::score::tests::test_compute_score_perfect_match ... ok
[INFO] [stdout] test cli::score::tests::test_compute_score_partial_match ... ok
[INFO] [stdout] test cli::score::tests::test_custom_weights ... ok
[INFO] [stdout] test cli::score::tests::test_score_with_md5_conflict ... ok
[INFO] [stdout] test cli::score::tests::test_score_with_md5_match ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_adds_md5_when_missing ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_excludes_name_from_aliases ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_fills_missing_report_contig_id ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_default_threshold ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_keeps_existing_md5 ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_length_mismatch_errors ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_md5_same_value_ok ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_name_mismatch_errors ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_takes_first_report_contig_id ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_unions_aliases ... ok
[INFO] [stdout] test core::contig::tests::test_is_mitochondrial ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_md5_conflict_errors ... ok
[INFO] [stdout] test core::contig::tests::test_is_primary_chromosome ... ok
[INFO] [stdout] test core::header::tests::test_detect_mixed_naming ... ok
[INFO] [stdout] test core::header::tests::test_detect_ucsc_naming ... ok
[INFO] [stdout] test core::header::tests::test_detect_ncbi_naming ... ok
[INFO] [stdout] test core::header::tests::test_md5_coverage_empty ... ok
[INFO] [stdout] test core::header::tests::test_md5_coverage ... ok
[INFO] [stdout] test core::header::tests::test_md5_coverage_full ... ok
[INFO] [stdout] test core::header::tests::test_name_length_set ... ok
[INFO] [stdout] test core::header::tests::test_primary_contigs ... ok
[INFO] [stdout] test core::header::tests::test_query_header_new ... ok
[INFO] [stdout] test core::header::tests::test_query_header_no_md5 ... ok
[INFO] [stdout] test core::header::tests::test_signature_computed ... ok
[INFO] [stdout] test core::header::tests::test_signature_deterministic ... ok
[INFO] [stdout] test core::header::tests::test_with_source ... ok
[INFO] [stdout] test core::header::tests::test_query_header_md5_set ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_dict_file_uri ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_preserves_order ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_dict_file_as_tag ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_merges_inputs ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_single_dict ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_md5_conflict ... ok
[INFO] [stdout] test cli::score::tests::test_parse_dict_input ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_save_and_load_roundtrip ... ok
[INFO] [stdout] test catalog::store::tests::test_catalog_get_nonexistent ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_assembly_info_populated ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_exact_match ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_name_length_fallback ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_subset_match ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_superset_match ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_alias ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_name ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_alias ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_name ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_exact ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_md5_conflict ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_no_md5 ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_unmatched ... ok
[INFO] [stdout] test matching::scoring::tests::test_composite_score_never_exceeds_one ... ok
[INFO] [stdout] test matching::scoring::tests::test_composite_score_with_custom_weights_never_exceeds_one ... ok
[INFO] [stdout] test matching::scoring::tests::test_jaccard_similarity ... ok
[INFO] [stdout] test matching::scoring::tests::test_longest_increasing_subsequence ... ok
[INFO] [stdout] test matching::scoring::tests::test_md5_conflict_gets_heavy_penalty ... ok
[INFO] [stdout] test matching::scoring::tests::test_mixed_match_types_weighted_correctly ... ok
[INFO] [stdout] test matching::scoring::tests::test_perfect_name_length_match_no_md5_gets_high_score ... ok
[INFO] [stdout] test matching::engine::tests::test_catalog_contains_ucsc_patch_aliases ... ok
[INFO] [stdout] test parsing::fai::tests::test_parse_fai_empty ... ok
[INFO] [stdout] test parsing::fai::tests::test_parse_fai_entries ... ok
[INFO] [stdout] test parsing::fai::tests::test_parse_fai_text ... ok
[INFO] [stdout] test parsing::fasta::tests::test_is_fasta_file ... ok
[INFO] [stdout] test parsing::dict::tests::test_parse_dict_text ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_file ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_empty_fasta ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5 ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_existing_ucsc_name ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_disabled ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5_lowercase ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_fix ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_invalid_format ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_enabled ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_novel ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_version_2 ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_novel_patch_ucsc_generation ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_no_header ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_with_patches ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_ncbi_entry_to_contig ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_to_contig_with_ucsc_generation ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_ucsc_generation_for_different_chromosomes ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_empty ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_truncated_after_header ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_basic ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_basic ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_empty ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_truncated_after_header ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_already_tabs ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_mixed_lines ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_multiple_spaces ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_preserves_non_header_lines ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_skips_comment_lines ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_tabs_and_spaces_mixed ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_spaces_to_tabs ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text_no_sq ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_aliases ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_csv_text ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_comments_before_header ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_no_header ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_text ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_contig_line ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_header ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_spaces ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_no_contigs ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_quoted_values ... ok
[INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields ... ok
[INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_utf8 ... ok
[INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_empty ... ok
[INFO] [stdout] test refget::enrichment::tests::test_contigs_without_md5_are_skipped ... ok
[INFO] [stdout] test matching::engine::tests::test_no_matches_for_invalid_contigs ... ok
[INFO] [stdout] test refget::enrichment::tests::test_mixed_contigs_with_and_without_md5 ... ok
[INFO] [stdout] test refget::enrichment::tests::test_concurrency_limit_respected ... ok
[INFO] [stdout] test refget::enrichment::tests::test_invalid_server_produces_errors ... ok
[INFO] [stdout] test utils::validation::tests::test_check_contig_limit ... ok
[INFO] [stdout] test utils::validation::tests::test_compute_sha512t24u ... ok
[INFO] [stdout] test utils::validation::tests::test_has_known_extension ... ok
[INFO] [stdout] test utils::validation::tests::test_compute_signature ... ok
[INFO] [stdout] test utils::validation::tests::test_normalize_md5 ... ok
[INFO] [stdout] test utils::validation::tests::test_is_valid_sha512t24u ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_content_binary ... ok
[INFO] [stdout] test utils::validation::tests::test_is_valid_md5 ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_content_text ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_sam ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_vcf ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_filename_dangerous ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_filename_safe ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_filename_sanitization ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_upload_complete ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_bam ... ok
[INFO] [stdout] test web::format_detection::tests::test_combined_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_dict_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_dict_detection_with_spaces ... ok
[INFO] [stdout] test web::format_detection::tests::test_fai_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_filename_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_fai_validation ... ok
[INFO] [stdout] test web::format_detection::tests::test_ncbi_report_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_bam_from_bytes ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_cram ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_truncated_bam ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_bam ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_unsupported_format ... ok
[INFO] [stdout] test web::format_detection::tests::test_sam_header_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_sam_header_detection_with_spaces ... ok
[INFO] [stdout] test web::format_detection::tests::test_sam_validation_with_spaces ... ok
[INFO] [stdout] test web::format_detection::tests::test_vcf_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_format_validation ... ok
[INFO] [stdout] test catalog::store::tests::test_name_length_set_contains_aliases ... ok
[INFO] [stdout] test catalog::store::tests::test_load_embedded_catalog ... ok
[INFO] [stdout] test matching::engine::tests::test_find_best_match ... ok
[INFO] [stdout] test catalog::store::tests::test_catalog_get_by_id ... ok
[INFO] [stdout] test catalog::index::tests::test_find_candidates_real_catalog ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_grch37 ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_ncbi_naming ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_no_md5 ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_grch38 ... ok
[INFO] [stdout] test matching::engine::tests::test_ucsc_style_fix_patch_matching ... ok
[INFO] [stdout] test matching::engine::tests::test_ucsc_style_novel_patch_matching ... ok
[INFO] [stdout] test matching::engine::tests::test_ucsc_style_y_chromosome_patch_matching ... ok
[INFO] [stdout] test catalog::store::tests::test_catalog_to_json ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 189 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 9.08s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/ref_solver-bd41f22c9bad7ee0)
[INFO] [stdout] 
[INFO] [stdout] running 189 tests
[INFO] [stdout] test catalog::builder::tests::test_builder_chm13_assembly_display ... ok
[INFO] [stdout] test catalog::builder::tests::test_detect_assembly ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_no_assembly_preserves_contig_assembly ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_no_download_url_preserves_contig_uri ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_conflict_detection ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_merges_inputs ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_single_input ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_dict_file_uri ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_contig_assembly ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_merge_with_aliases ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_dict_file_as_tag ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_md5_conflict ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_exact_match ... ok
[INFO] [stdout] test catalog::builder::tests::test_input_format_detection ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_single_dict ... ok
[INFO] [stdout] test catalog::builder::tests::test_distribution_builder_preserves_order ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_partial_match ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_empty_input ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_save_and_load_roundtrip ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_species_overrides_contig_species ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_standalone_distribution ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_no_match ... ok
[INFO] [stdout] test catalog::index::tests::test_find_candidates_via_alias ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_index_by_name_length ... ok
[INFO] [stdout] test catalog::store::tests::test_alias_indexing ... ok
[INFO] [stdout] test catalog::store::tests::test_add_reference ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_default_threshold ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_contig_uri ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_get_distribution ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_distinguishes_versions ... ok
[INFO] [stdout] test cli::score::tests::test_score_with_md5_conflict ... ok
[INFO] [stdout] test cli::score::tests::test_compute_score_partial_match ... ok
[INFO] [stdout] test cli::score::tests::test_compute_score_asymmetric ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_excludes_name_from_aliases ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_fills_missing_report_contig_id ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_keeps_existing_md5 ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_md5_conflict_errors ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_md5_same_value_ok ... ok
[INFO] [stdout] test cli::score::tests::test_compute_score_perfect_match ... ok
[INFO] [stdout] test catalog::hierarchical::tests::test_index_by_md5 ... ok
[INFO] [stdout] test cli::score::tests::test_custom_weights ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_length_mismatch_errors ... ok
[INFO] [stdout] test cli::score::tests::test_parse_dict_input ... ok
[INFO] [stdout] test catalog::builder::tests::test_builder_no_species_preserves_contig_species ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_adds_md5_when_missing ... ok
[INFO] [stdout] test cli::score::tests::test_score_with_md5_match ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_takes_first_report_contig_id ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_unions_aliases ... ok
[INFO] [stdout] test core::contig::tests::test_is_mitochondrial ... ok
[INFO] [stdout] test core::contig::tests::test_is_primary_chromosome ... ok
[INFO] [stdout] test core::header::tests::test_detect_mixed_naming ... ok
[INFO] [stdout] test core::header::tests::test_detect_ncbi_naming ... ok
[INFO] [stdout] test core::header::tests::test_md5_coverage_empty ... ok
[INFO] [stdout] test core::header::tests::test_md5_coverage ... ok
[INFO] [stdout] test core::header::tests::test_md5_coverage_full ... ok
[INFO] [stdout] test core::header::tests::test_name_length_set ... ok
[INFO] [stdout] test core::assembly::tests::test_merge_name_mismatch_errors ... ok
[INFO] [stdout] test core::header::tests::test_detect_ucsc_naming ... ok
[INFO] [stdout] test core::header::tests::test_signature_computed ... ok
[INFO] [stdout] test core::header::tests::test_with_source ... ok
[INFO] [stdout] test core::header::tests::test_signature_deterministic ... ok
[INFO] [stdout] test core::header::tests::test_query_header_no_md5 ... ok
[INFO] [stdout] test core::header::tests::test_primary_contigs ... ok
[INFO] [stdout] test core::header::tests::test_query_header_md5_set ... ok
[INFO] [stdout] test core::header::tests::test_query_header_new ... ok
[INFO] [stdout] test matching::engine::tests::test_no_matches_for_invalid_contigs ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_assembly_info_populated ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_exact_match ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_name_length_fallback ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_subset_match ... ok
[INFO] [stdout] test matching::hierarchical_engine::tests::test_superset_match ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_alias ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_name ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_alias ... ok
[INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_name ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_exact ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_md5_conflict ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_no_md5 ... ok
[INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_unmatched ... ok
[INFO] [stdout] test matching::scoring::tests::test_composite_score_never_exceeds_one ... ok
[INFO] [stdout] test matching::scoring::tests::test_composite_score_with_custom_weights_never_exceeds_one ... ok
[INFO] [stdout] test matching::scoring::tests::test_jaccard_similarity ... ok
[INFO] [stdout] test matching::scoring::tests::test_longest_increasing_subsequence ... ok
[INFO] [stdout] test matching::scoring::tests::test_md5_conflict_gets_heavy_penalty ... ok
[INFO] [stdout] test matching::scoring::tests::test_mixed_match_types_weighted_correctly ... ok
[INFO] [stdout] test matching::scoring::tests::test_perfect_name_length_match_no_md5_gets_high_score ... ok
[INFO] [stdout] test parsing::dict::tests::test_parse_dict_text ... ok
[INFO] [stdout] test parsing::fai::tests::test_parse_fai_empty ... ok
[INFO] [stdout] test parsing::fai::tests::test_parse_fai_entries ... ok
[INFO] [stdout] test parsing::fai::tests::test_parse_fai_text ... ok
[INFO] [stdout] test parsing::fasta::tests::test_is_fasta_file ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_empty_fasta ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_file ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5 ... ok
[INFO] [stdout] test catalog::store::tests::test_catalog_get_by_id ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_existing_ucsc_name ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_disabled ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_enabled ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_fix ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_invalid_format ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_novel ... ok
[INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5_lowercase ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_version_2 ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_ncbi_entry_to_contig ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_novel_patch_ucsc_generation ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_with_patches ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_no_header ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_ucsc_generation_for_different_chromosomes ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_basic ... ok
[INFO] [stdout] test parsing::ncbi_report::tests::test_to_contig_with_ucsc_generation ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_empty ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_truncated_after_header ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_basic ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_empty ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_already_tabs ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_mixed_lines ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_multiple_spaces ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_preserves_non_header_lines ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_skips_comment_lines ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_spaces_to_tabs ... ok
[INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_tabs_and_spaces_mixed ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text_no_sq ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_aliases ... ok
[INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_truncated_after_header ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_csv_text ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_comments_before_header ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_no_header ... ok
[INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_text ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_contig_line ... ok
[INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_spaces ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_header ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_no_contigs ... ok
[INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_quoted_values ... ok
[INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields ... ok
[INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_utf8 ... ok
[INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_empty ... ok
[INFO] [stdout] test refget::enrichment::tests::test_concurrency_limit_respected ... ok
[INFO] [stdout] test refget::enrichment::tests::test_contigs_without_md5_are_skipped ... ok
[INFO] [stdout] test refget::enrichment::tests::test_invalid_server_produces_errors ... ok
[INFO] [stdout] test utils::validation::tests::test_check_contig_limit ... ok
[INFO] [stdout] test utils::validation::tests::test_compute_sha512t24u ... ok
[INFO] [stdout] test refget::enrichment::tests::test_mixed_contigs_with_and_without_md5 ... ok
[INFO] [stdout] test utils::validation::tests::test_has_known_extension ... ok
[INFO] [stdout] test utils::validation::tests::test_is_valid_md5 ... ok
[INFO] [stdout] test utils::validation::tests::test_is_valid_sha512t24u ... ok
[INFO] [stdout] test utils::validation::tests::test_normalize_md5 ... ok
[INFO] [stdout] test utils::validation::tests::test_compute_signature ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_content_text ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_content_binary ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_cram ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_bam ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_vcf ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_filename_dangerous ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_filename_safe ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_filename_sanitization ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_file_format_sam ... ok
[INFO] [stdout] test web::format_detection::tests::test_combined_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_dict_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_dict_detection_with_spaces ... ok
[INFO] [stdout] test web::format_detection::tests::test_fai_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_fai_validation ... ok
[INFO] [stdout] test web::format_detection::tests::test_filename_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_format_validation ... ok
[INFO] [stdout] test web::format_detection::tests::test_ncbi_report_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_bam_from_bytes ... ok
[INFO] [stdout] test utils::validation::tests::test_validate_upload_complete ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_bam ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_truncated_bam ... ok
[INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_unsupported_format ... ok
[INFO] [stdout] test web::format_detection::tests::test_sam_header_detection_with_spaces ... ok
[INFO] [stdout] test web::format_detection::tests::test_sam_header_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_vcf_detection ... ok
[INFO] [stdout] test web::format_detection::tests::test_sam_validation_with_spaces ... ok
[INFO] [stdout] test matching::engine::tests::test_catalog_contains_ucsc_patch_aliases ... ok
[INFO] [stdout] test catalog::store::tests::test_load_embedded_catalog ... ok
[INFO] [stdout] test catalog::store::tests::test_name_length_set_contains_aliases ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_grch37 ... ok
[INFO] [stdout] test catalog::index::tests::test_find_candidates_real_catalog ... ok
[INFO] [stdout] test catalog::store::tests::test_catalog_get_nonexistent ... ok
[INFO] [stdout] test matching::engine::tests::test_find_best_match ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_no_md5 ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_ncbi_naming ... ok
[INFO] [stdout] test matching::engine::tests::test_ucsc_style_y_chromosome_patch_matching ... ok
[INFO] [stdout] test matching::engine::tests::test_ucsc_style_novel_patch_matching ... ok
[INFO] [stdout] test matching::engine::tests::test_ucsc_style_fix_patch_matching ... ok
[INFO] [stdout] test matching::engine::tests::test_find_matches_grch38 ... ok
[INFO] [stdout] test catalog::store::tests::test_catalog_to_json ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 189 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 8.55s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/dos_tests.rs (/opt/rustwide/target/debug/deps/dos_tests-3bcc645bb2d2053d)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] test test_attack_recovery_resilience ... ok
[INFO] [stdout] test test_memory_allocation_protection ... ok
[INFO] [stdout] test test_cpu_intensive_parsing_protection ... ok
[INFO] [stdout] test test_rapid_request_flood_protection ... ok
[INFO] [stdout] test test_binary_processing_resource_limits ... ok
[INFO] [stdout] test test_realistic_attack_simulation ... ok
[INFO] [stdout] test test_malformed_multipart_protection ... ok
[INFO] [stdout] test test_error_handling_resource_protection ... ok
[INFO] [stdout] test test_concurrency_limit_protection ... ok
[INFO] [stdout] test test_file_size_limit_prevention ... ok
[INFO] [stdout] test test_network_resource_protection ... ok
[INFO] [stdout] test test_field_count_limit_prevention ... ok
[INFO] [stdout] test test_string_processing_limits ... ok
[INFO] [stdout] test test_slow_request_timeout_protection ... ok
[INFO] [stderr]      Running tests/header_extraction_tests.rs (/opt/rustwide/target/debug/deps/header_extraction_tests-42189b225dcb938f)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 30.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_parse_bam_from_reader_with_trailing_garbage ... ok
[INFO] [stdout] test test_parse_bam_from_reader_roundtrip ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/security_tests.rs (/opt/rustwide/target/debug/deps/security_tests-9acd22f730875751)
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test test_file_format_validation ... ok
[INFO] [stdout] test test_error_sanitization ... ok
[INFO] [stdout] test test_format_detection_security ... ok
[INFO] [stdout] test test_comprehensive_upload_validation ... ok
[INFO] [stdout] test test_rate_limiting_configuration ... ok
[INFO] [stdout] test test_validation_error_handling ... ok
[INFO] [stdout] test test_security_headers_concepts ... ok
[INFO] [stdout] test test_filename_validation_security ... ok
[INFO] [stdout] test test_field_limit_concepts ... ok
[INFO] [stdout] test test_content_integrity_validation ... ok
[INFO] [stderr]    Doc-tests ref_solver
[INFO] [stdout] test test_temp_file_security ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test src/utils/validation.rs - utils::validation::check_contig_limit (line 105) ... ignored
[INFO] [stdout] test src/parsing/mod.rs - parsing (line 14) - compile ... ok
[INFO] [stdout] test src/catalog/mod.rs - catalog (line 17) - compile ... ok
[INFO] [stdout] test src/matching/mod.rs - matching (line 29) - compile ... ok
[INFO] [stdout] test src/lib.rs - (line 24) - compile ... ok
[INFO] [stdout] test src/catalog/mod.rs - catalog (line 37) - compile ... ok
[INFO] [stdout] test src/catalog/builder.rs - catalog::builder::ReferenceBuilder::generate_ucsc_names (line 264) ... ok
[INFO] [stdout] test src/utils/validation.rs - utils::validation::compute_sha512t24u (line 49) ... ok
[INFO] [stdout] test src/parsing/ncbi_report.rs - parsing::ncbi_report::generate_ucsc_patch_name (line 94) ... ok
[INFO] [stdout] test src/utils/validation.rs - utils::validation::is_valid_md5 (line 17) ... ok
[INFO] [stdout] test src/utils/validation.rs - utils::validation::is_valid_sha512t24u (line 64) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 2.14s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "cccf9786bce079bfb119358f0113ce61348f9f7c5a55cab9d9cbf1d6835d1094", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cccf9786bce079bfb119358f0113ce61348f9f7c5a55cab9d9cbf1d6835d1094", kill_on_drop: false }`
[INFO] [stdout] cccf9786bce079bfb119358f0113ce61348f9f7c5a55cab9d9cbf1d6835d1094
