[INFO] fetching crate oxo-flow-venus 0.3.0...
[INFO] testing oxo-flow-venus-0.3.0 against beta-2026-04-21 for beta-1.96-2
[INFO] extracting crate oxo-flow-venus 0.3.0 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate oxo-flow-venus 0.3.0
[INFO] finished tweaking crates.io crate oxo-flow-venus 0.3.0
[INFO] tweaked toml for crates.io crate oxo-flow-venus 0.3.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate oxo-flow-venus 0.3.0 on toolchain beta-2026-04-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate oxo-flow-venus 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-04-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3db9fe9f064a8702e28263a73ceb592dc0c4b0075f15cae051cd2454506cc0da
[INFO] running `Command { std: "docker" "start" "-a" "3db9fe9f064a8702e28263a73ceb592dc0c4b0075f15cae051cd2454506cc0da", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3db9fe9f064a8702e28263a73ceb592dc0c4b0075f15cae051cd2454506cc0da", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3db9fe9f064a8702e28263a73ceb592dc0c4b0075f15cae051cd2454506cc0da", kill_on_drop: false }`
[INFO] [stdout] 3db9fe9f064a8702e28263a73ceb592dc0c4b0075f15cae051cd2454506cc0da
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c7afb22047a82db839fd81370c77172652cc903e2640037ddb23ab75734ee136
[INFO] running `Command { std: "docker" "start" "-a" "c7afb22047a82db839fd81370c77172652cc903e2640037ddb23ab75734ee136", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.184
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling ucd-trie v0.1.7
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling indexmap v2.13.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling winnow v0.7.15
[INFO] [stderr]    Compiling slug v0.1.6
[INFO] [stderr]    Compiling humansize v2.1.3
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling unicode-segmentation v1.13.2
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling pest v2.8.6
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling serde_spanned v0.6.9
[INFO] [stderr]    Compiling toml_datetime v0.6.11
[INFO] [stderr]    Compiling chrono v0.4.44
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling errno v0.3.14
[INFO] [stderr]    Compiling socket2 v0.6.3
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling mio v1.2.0
[INFO] [stderr]    Compiling pest_meta v2.8.6
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling signal-hook-registry v1.4.8
[INFO] [stderr]    Compiling uuid v1.23.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling parking_lot v0.12.5
[INFO] [stderr]    Compiling tokio v1.51.0
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]    Compiling pest_generator v2.8.6
[INFO] [stderr]    Compiling pest_derive v2.8.6
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]    Compiling globset v0.4.18
[INFO] [stderr]    Compiling chrono-tz-build v0.3.0
[INFO] [stderr]    Compiling ignore v0.4.25
[INFO] [stderr]    Compiling chrono-tz v0.9.0
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling tera v1.20.1
[INFO] [stderr]    Compiling oxo-flow-core v0.3.0
[INFO] [stderr]    Compiling oxo-flow-venus v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 42.39s
[INFO] running `Command { std: "docker" "inspect" "c7afb22047a82db839fd81370c77172652cc903e2640037ddb23ab75734ee136", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c7afb22047a82db839fd81370c77172652cc903e2640037ddb23ab75734ee136", kill_on_drop: false }`
[INFO] [stdout] c7afb22047a82db839fd81370c77172652cc903e2640037ddb23ab75734ee136
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 319e385ae094946b91062fed5ddcd51149bd7f3be86d421823658245706b6dcc
[INFO] running `Command { std: "docker" "start" "-a" "319e385ae094946b91062fed5ddcd51149bd7f3be86d421823658245706b6dcc", kill_on_drop: false }`
[INFO] [stderr]    Compiling oxo-flow-venus v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.02s
[INFO] running `Command { std: "docker" "inspect" "319e385ae094946b91062fed5ddcd51149bd7f3be86d421823658245706b6dcc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "319e385ae094946b91062fed5ddcd51149bd7f3be86d421823658245706b6dcc", kill_on_drop: false }`
[INFO] [stdout] 319e385ae094946b91062fed5ddcd51149bd7f3be86d421823658245706b6dcc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-04-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] ecb0cfa54db48a5c95de51fa1e315b8d77fffb2aebe624ac525bdc04ade14a2c
[INFO] running `Command { std: "docker" "start" "-a" "ecb0cfa54db48a5c95de51fa1e315b8d77fffb2aebe624ac525bdc04ade14a2c", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/oxo_flow_venus-a603f04e9c202395)
[INFO] [stdout] 
[INFO] [stdout] running 24 tests
[INFO] [stdout] test tests::analysis_mode_display ... ok
[INFO] [stdout] test tests::build_normal_only_pipeline ... ok
[INFO] [stdout] test tests::build_tumor_normal_has_msi ... ok
[INFO] [stdout] test tests::all_samples ... ok
[INFO] [stdout] test tests::build_tumor_normal_strelka2 ... ok
[INFO] [stdout] test tests::build_tumor_only_no_msi ... ok
[INFO] [stdout] test tests::build_tumor_only_pipeline ... ok
[INFO] [stdout] test tests::filter_mutect_calls_uses_filtered_vcf_in_annotation ... ok
[INFO] [stdout] test tests::known_sites_in_bqsr ... ok
[INFO] [stdout] test tests::panel_sequencing_with_bed ... ok
[INFO] [stdout] test tests::pipeline_rule_environments ... ok
[INFO] [stdout] test tests::pipeline_rule_dependencies ... ok
[INFO] [stdout] test tests::validate_tumor_only ... ok
[INFO] [stdout] test tests::validate_tumor_only_no_samples ... ok
[INFO] [stdout] test tests::venus_step_display_cnv_msi_tmb ... ok
[INFO] [stdout] test tests::validate_wes_needs_bed ... ok
[INFO] [stdout] test tests::build_tumor_normal_pipeline ... ok
[INFO] [stdout] test tests::validate_tumor_normal_needs_both_samples ... ok
[INFO] [stdout] test tests::strelka2_not_in_tumor_only ... ok
[INFO] [stdout] test tests::venus_step_display ... ok
[INFO] [stdout] test tests::genome_build_display ... ok
[INFO] [stdout] test tests::generate_oxoflow_round_trip ... ok
[INFO] [stdout] test tests::seq_type_display ... ok
[INFO] [stdout] test tests::generate_oxoflow_valid ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 24 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/venus-bb8bd071694e0cc9)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests oxo_flow_venus
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "ecb0cfa54db48a5c95de51fa1e315b8d77fffb2aebe624ac525bdc04ade14a2c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ecb0cfa54db48a5c95de51fa1e315b8d77fffb2aebe624ac525bdc04ade14a2c", kill_on_drop: false }`
[INFO] [stdout] ecb0cfa54db48a5c95de51fa1e315b8d77fffb2aebe624ac525bdc04ade14a2c
