[INFO] cloning repository https://github.com/sanath-2024/stan_x_paper_prep
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sanath-2024/stan_x_paper_prep" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsanath-2024%2Fstan_x_paper_prep", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsanath-2024%2Fstan_x_paper_prep'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 408b128252b7362d6be444f173ec9d7dec9f2b7d
[INFO] checking sanath-2024/stan_x_paper_prep against 1.95.0-beta.7 for beta-1.95-4
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsanath-2024%2Fstan_x_paper_prep" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sanath-2024/stan_x_paper_prep
[INFO] finished tweaking git repo https://github.com/sanath-2024/stan_x_paper_prep
[INFO] tweaked toml for git repo https://github.com/sanath-2024/stan_x_paper_prep written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sanath-2024/stan_x_paper_prep on toolchain 1.95.0-beta.7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0-beta.7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sanath-2024/stan_x_paper_prep already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0-beta.7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking sanath-2024/stan_x_paper_prep against 1.95.0-beta.7 for beta-1.95-4
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsanath-2024%2Fstan_x_paper_prep" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sanath-2024/stan_x_paper_prep
[INFO] finished tweaking git repo https://github.com/sanath-2024/stan_x_paper_prep
[INFO] tweaked toml for git repo https://github.com/sanath-2024/stan_x_paper_prep written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sanath-2024/stan_x_paper_prep on toolchain 1.95.0-beta.7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0-beta.7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sanath-2024/stan_x_paper_prep already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0-beta.7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.13
[INFO] [stderr]   Downloaded num_cpus v1.14.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bytecount v0.6.3
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded thiserror v1.0.37
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded rustversion v1.0.9
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.12
[INFO] [stderr]   Downloaded wide v0.7.5
[INFO] [stderr]   Downloaded rayon-core v1.10.1
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded rayon v1.6.0
[INFO] [stderr]   Downloaded bio v1.0.0
[INFO] [stderr]   Downloaded clap v4.0.26
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ordered-float v3.4.0
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded paste v1.0.9
[INFO] [stderr]   Downloaded thiserror-impl v1.0.37
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0-beta.7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4fb25bdbec76668c82cea41be34bca1bf27cf625f3aa01b086b289d85811a9ad
[INFO] running `Command { std: "docker" "start" "-a" "4fb25bdbec76668c82cea41be34bca1bf27cf625f3aa01b086b289d85811a9ad", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4fb25bdbec76668c82cea41be34bca1bf27cf625f3aa01b086b289d85811a9ad", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4fb25bdbec76668c82cea41be34bca1bf27cf625f3aa01b086b289d85811a9ad", kill_on_drop: false }`
[INFO] [stdout] 4fb25bdbec76668c82cea41be34bca1bf27cf625f3aa01b086b289d85811a9ad
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0-beta.7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 12378ccb1305fa9e67049a2ce4fea61ebf85b7f2366a747838c1b7d75bed84de
[INFO] running `Command { std: "docker" "start" "-a" "12378ccb1305fa9e67049a2ce4fea61ebf85b7f2366a747838c1b7d75bed84de", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]    Compiling proc-macro2 v1.0.47
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling syn v1.0.103
[INFO] [stderr]    Compiling libc v0.2.137
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling serde_derive v1.0.147
[INFO] [stderr]    Compiling serde v1.0.147
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling crossbeam-utils v0.8.13
[INFO] [stderr]     Checking bytemuck v1.12.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.12
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling rustversion v1.0.9
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]    Compiling paste v1.0.9
[INFO] [stderr]    Compiling thiserror v1.0.37
[INFO] [stderr]     Checking safe_arch v0.6.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]    Compiling rayon-core v1.10.1
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking regex v1.7.0
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking ryu v1.0.11
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]     Checking wide v0.7.5
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking clap_lex v0.3.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking getrandom v0.2.8
[INFO] [stderr]     Checking num_cpus v1.14.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.2
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking once_cell v1.16.0
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking petgraph v0.6.2
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking clap v4.0.26
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rayon v1.6.0
[INFO] [stderr]     Checking num-complex v0.4.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.4.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.37
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.0.0
[INFO] [stderr]     Checking calculate_stats v0.1.0 (/opt/rustwide/workdir/calculate_stats)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.51s
[INFO] running `Command { std: "docker" "inspect" "12378ccb1305fa9e67049a2ce4fea61ebf85b7f2366a747838c1b7d75bed84de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "12378ccb1305fa9e67049a2ce4fea61ebf85b7f2366a747838c1b7d75bed84de", kill_on_drop: false }`
[INFO] [stdout] 12378ccb1305fa9e67049a2ce4fea61ebf85b7f2366a747838c1b7d75bed84de
