[INFO] cloning repository https://github.com/yjcyxky/biomedgps
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/yjcyxky/biomedgps" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyjcyxky%2Fbiomedgps", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyjcyxky%2Fbiomedgps'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 44aa54549a3a6fa47fbd0aef9dde409ea5c68dbe
[INFO] checking yjcyxky/biomedgps/44aa54549a3a6fa47fbd0aef9dde409ea5c68dbe against 1.94.0 for beta-1.95-4
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyjcyxky%2Fbiomedgps" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/yjcyxky/biomedgps
[INFO] finished tweaking git repo https://github.com/yjcyxky/biomedgps
[INFO] tweaked toml for git repo https://github.com/yjcyxky/biomedgps written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/yjcyxky/biomedgps on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/yjcyxky/biomedgps already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9442b32a760a516e8df62491aa3dbecb7c7a82bc81a9487807af888b2e473070
[INFO] running `Command { std: "docker" "start" "-a" "9442b32a760a516e8df62491aa3dbecb7c7a82bc81a9487807af888b2e473070", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9442b32a760a516e8df62491aa3dbecb7c7a82bc81a9487807af888b2e473070", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9442b32a760a516e8df62491aa3dbecb7c7a82bc81a9487807af888b2e473070", kill_on_drop: false }`
[INFO] [stdout] 9442b32a760a516e8df62491aa3dbecb7c7a82bc81a9487807af888b2e473070
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 84f4364291ce772f3c4221bc87305999c25c1b8a1a0b5d7bd36b8f22f92c9606
[INFO] running `Command { std: "docker" "start" "-a" "84f4364291ce772f3c4221bc87305999c25c1b8a1a0b5d7bd36b8f22f92c9606", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.151
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[INFO] [stdout] warning: unused import: `Pagination`
[INFO] [stdout]  --> src/api/route.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 |     Pagination, PaginationQuery, PostResponse, PredictedNodeQuery, SubgraphIdQuery,
[INFO] [stdout]   |     ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::model::llm::Context`
[INFO] [stdout]  --> src/api/schema.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::model::llm::Context;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `chrono::serde::ts_seconds`
[INFO] [stdout]  --> src/api/schema.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use chrono::serde::ts_seconds;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `DateTime` and `Utc`
[INFO] [stdout]  --> src/api/schema.rs:9:14
[INFO] [stdout]   |
[INFO] [stdout] 9 | use chrono::{DateTime, Utc};
[INFO] [stdout]   |              ^^^^^^^^  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug` and `info`
[INFO] [stdout]   --> src/api/schema.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | use log::{debug, info, warn};
[INFO] [stdout]    |           ^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `GPT4`
[INFO] [stdout]   --> src/model/llm.rs:10:47
[INFO] [stdout]    |
[INFO] [stdout] 10 | use openai_api_rs::v1::common::{GPT3_5_TURBO, GPT4, GPT4_1106_PREVIEW};
[INFO] [stdout]    |                                               ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Enum`
[INFO] [stdout]   --> src/model/llm.rs:12:20
[INFO] [stdout]    |
[INFO] [stdout] 12 | use poem_openapi::{Enum, Object};
[INFO] [stdout]    |                    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserializer` and `Serializer`
[INFO] [stdout]   --> src/model/llm.rs:14:26
[INFO] [stdout]    |
[INFO] [stdout] 14 | use serde::{Deserialize, Deserializer, Serialize, Serializer};
[INFO] [stdout]    |                          ^^^^^^^^^^^^             ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `FuturesUnordered` and `StreamExt`
[INFO] [stdout]  --> src/model/init_db.rs:9:23
[INFO] [stdout]   |
[INFO] [stdout] 9 | use futures::stream::{FuturesUnordered, StreamExt};
[INFO] [stdout]   |                       ^^^^^^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn`
[INFO] [stdout]  --> src/query_builder/sql_builder.rs:3:11
[INFO] [stdout]   |
[INFO] [stdout] 3 | use log::{debug, info, warn};
[INFO] [stdout]   |           ^^^^^  ^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug` and `error`
[INFO] [stdout]  --> src/query_builder/cypher_builder.rs:2:11
[INFO] [stdout]   |
[INFO] [stdout] 2 | use log::{debug, error, info};
[INFO] [stdout]   |           ^^^^^  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Pagination`
[INFO] [stdout]  --> src/api/route.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 |     Pagination, PaginationQuery, PostResponse, PredictedNodeQuery, SubgraphIdQuery,
[INFO] [stdout]   |     ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `error`
[INFO] [stdout]     --> src/api/route.rs:1465:22
[INFO] [stdout]      |
[INFO] [stdout] 1465 |     use log::{debug, error, LevelFilter};
[INFO] [stdout]      |                      ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Endpoint`, `Request`, and `Uri`
[INFO] [stdout]     --> src/api/route.rs:1469:28
[INFO] [stdout]      |
[INFO] [stdout] 1469 |         http::{StatusCode, Uri},
[INFO] [stdout]      |                            ^^^
[INFO] [stdout] 1470 |         Endpoint, EndpointExt, Request, Route,
[INFO] [stdout]      |         ^^^^^^^^               ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::model::llm::Context`
[INFO] [stdout]  --> src/api/schema.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::model::llm::Context;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `chrono::serde::ts_seconds`
[INFO] [stdout]  --> src/api/schema.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use chrono::serde::ts_seconds;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `DateTime` and `Utc`
[INFO] [stdout]  --> src/api/schema.rs:9:14
[INFO] [stdout]   |
[INFO] [stdout] 9 | use chrono::{DateTime, Utc};
[INFO] [stdout]   |              ^^^^^^^^  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug` and `info`
[INFO] [stdout]   --> src/api/schema.rs:10:11
[INFO] [stdout]    |
[INFO] [stdout] 10 | use log::{debug, info, warn};
[INFO] [stdout]    |           ^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `GPT4`
[INFO] [stdout]   --> src/model/llm.rs:10:47
[INFO] [stdout]    |
[INFO] [stdout] 10 | use openai_api_rs::v1::common::{GPT3_5_TURBO, GPT4, GPT4_1106_PREVIEW};
[INFO] [stdout]    |                                               ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Enum`
[INFO] [stdout]   --> src/model/llm.rs:12:20
[INFO] [stdout]    |
[INFO] [stdout] 12 | use poem_openapi::{Enum, Object};
[INFO] [stdout]    |                    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserializer` and `Serializer`
[INFO] [stdout]   --> src/model/llm.rs:14:26
[INFO] [stdout]    |
[INFO] [stdout] 14 | use serde::{Deserialize, Deserializer, Serialize, Serializer};
[INFO] [stdout]    |                          ^^^^^^^^^^^^             ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `FuturesUnordered` and `StreamExt`
[INFO] [stdout]  --> src/model/init_db.rs:9:23
[INFO] [stdout]   |
[INFO] [stdout] 9 | use futures::stream::{FuturesUnordered, StreamExt};
[INFO] [stdout]   |                       ^^^^^^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `info` and `warn`
[INFO] [stdout]  --> src/query_builder/sql_builder.rs:3:18
[INFO] [stdout]   |
[INFO] [stdout] 3 | use log::{debug, info, warn};
[INFO] [stdout]   |                  ^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug` and `error`
[INFO] [stdout]  --> src/query_builder/cypher_builder.rs:2:11
[INFO] [stdout]   |
[INFO] [stdout] 2 | use log::{debug, error, info};
[INFO] [stdout]   |           ^^^^^  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `error`
[INFO] [stdout]    --> src/query_builder/cypher_builder.rs:326:22
[INFO] [stdout]     |
[INFO] [stdout] 326 |     use log::{debug, error, info};
[INFO] [stdout]     |                      ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `base64::decode`: Use Engine::decode
[INFO] [stdout]    --> src/api/auth.rs:155:31
[INFO] [stdout]     |
[INFO] [stdout] 155 |     let header_json = base64::decode(header).unwrap();
[INFO] [stdout]     |                               ^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `base64::decode`: Use Engine::decode
[INFO] [stdout]    --> src/api/auth.rs:169:31
[INFO] [stdout]     |
[INFO] [stdout] 169 |     let header_json = base64::decode(header).unwrap();
[INFO] [stdout]     |                               ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `base64::decode`: Use Engine::decode
[INFO] [stdout]    --> src/api/auth.rs:155:31
[INFO] [stdout]     |
[INFO] [stdout] 155 |     let header_json = base64::decode(header).unwrap();
[INFO] [stdout]     |                               ^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `base64::decode`: Use Engine::decode
[INFO] [stdout]    --> src/api/auth.rs:169:31
[INFO] [stdout]     |
[INFO] [stdout] 169 |     let header_json = base64::decode(header).unwrap();
[INFO] [stdout]     |                               ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> src/lib.rs:1109:15
[INFO] [stdout]      |
[INFO] [stdout] 1109 |             e.description()
[INFO] [stdout]      |               ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `query`
[INFO] [stdout]    --> src/model/graph.rs:624:9
[INFO] [stdout]     |
[INFO] [stdout] 624 |         query: &Option<ComposeQuery>,
[INFO] [stdout]     |         ^^^^^ help: if this is intentional, prefix it with an underscore: `_query`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `chrono::DateTime::<Tz>::from_utc`: Use TimeZone::from_utc_datetime() or DateTime::from_naive_utc_and_offset instead
[INFO] [stdout]    --> src/model/init_db.rs:647:35
[INFO] [stdout]     |
[INFO] [stdout] 647 |             created_at: DateTime::from_utc(NaiveDateTime::from_timestamp(0, 0), Utc),
[INFO] [stdout]     |                                   ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDateTime::from_timestamp`: use `from_timestamp_opt()` instead
[INFO] [stdout]    --> src/model/init_db.rs:647:59
[INFO] [stdout]     |
[INFO] [stdout] 647 |             created_at: DateTime::from_utc(NaiveDateTime::from_timestamp(0, 0), Utc),
[INFO] [stdout]     |                                                           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `chrono::DateTime::<Tz>::from_utc`: Use TimeZone::from_utc_datetime() or DateTime::from_naive_utc_and_offset instead
[INFO] [stdout]    --> src/model/init_db.rs:705:35
[INFO] [stdout]     |
[INFO] [stdout] 705 |             created_at: DateTime::from_utc(NaiveDateTime::from_timestamp(0, 0), Utc),
[INFO] [stdout]     |                                   ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDateTime::from_timestamp`: use `from_timestamp_opt()` instead
[INFO] [stdout]    --> src/model/init_db.rs:705:59
[INFO] [stdout]     |
[INFO] [stdout] 705 |             created_at: DateTime::from_utc(NaiveDateTime::from_timestamp(0, 0), Utc),
[INFO] [stdout]     |                                                           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> src/lib.rs:1109:15
[INFO] [stdout]      |
[INFO] [stdout] 1109 |             e.description()
[INFO] [stdout]      |               ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `query`
[INFO] [stdout]    --> src/model/graph.rs:624:9
[INFO] [stdout]     |
[INFO] [stdout] 624 |         query: &Option<ComposeQuery>,
[INFO] [stdout]     |         ^^^^^ help: if this is intentional, prefix it with an underscore: `_query`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `err`
[INFO] [stdout]    --> src/api/auth.rs:189:13
[INFO] [stdout]     |
[INFO] [stdout] 189 |         Err(err) => "".to_string()
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_err`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `err`
[INFO] [stdout]    --> src/api/auth.rs:194:13
[INFO] [stdout]     |
[INFO] [stdout] 194 |         Err(err) => "".to_string()
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_err`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `err`
[INFO] [stdout]    --> src/api/auth.rs:210:13
[INFO] [stdout]     |
[INFO] [stdout] 210 |         Err(err) => {
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_err`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]    --> src/model/util.rs:139:10
[INFO] [stdout]     |
[INFO] [stdout] 139 |     for (i, entity_type) in entity_types.iter().enumerate() {
[INFO] [stdout]     |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `err`
[INFO] [stdout]    --> src/api/auth.rs:189:13
[INFO] [stdout]     |
[INFO] [stdout] 189 |         Err(err) => "".to_string()
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_err`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `err`
[INFO] [stdout]    --> src/api/auth.rs:194:13
[INFO] [stdout]     |
[INFO] [stdout] 194 |         Err(err) => "".to_string()
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_err`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `err`
[INFO] [stdout]    --> src/api/auth.rs:210:13
[INFO] [stdout]     |
[INFO] [stdout] 210 |         Err(err) => {
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_err`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/model/kge.rs:589:17
[INFO] [stdout]     |
[INFO] [stdout] 589 |             Err(e) => {
[INFO] [stdout]     |                 ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/model/kge.rs:610:17
[INFO] [stdout]     |
[INFO] [stdout] 610 |             Err(e) => {
[INFO] [stdout]     |                 ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `topk_pairs` is never read
[INFO] [stdout]    --> src/query_builder/sql_builder.rs:293:26
[INFO] [stdout]     |
[INFO] [stdout] 293 |     let mut topk_pairs = Vec::new();
[INFO] [stdout]     |                          ^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `host` is never read
[INFO] [stdout]     --> src/lib.rs:1158:20
[INFO] [stdout]      |
[INFO] [stdout] 1158 |     let mut host = "".to_string();
[INFO] [stdout]      |                    ^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `username` is never read
[INFO] [stdout]     --> src/lib.rs:1159:24
[INFO] [stdout]      |
[INFO] [stdout] 1159 |     let mut username = "".to_string();
[INFO] [stdout]      |                        ^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `password` is never read
[INFO] [stdout]     --> src/lib.rs:1160:24
[INFO] [stdout]      |
[INFO] [stdout] 1160 |     let mut password = "".to_string();
[INFO] [stdout]      |                        ^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `add_organizations` and `add_projects` are never used
[INFO] [stdout]   --> src/api/auth.rs:35:8
[INFO] [stdout]    |
[INFO] [stdout] 26 | impl User {
[INFO] [stdout]    | --------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 35 |     fn add_organizations(&mut self, organizations: Vec<i32>) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 39 |     fn add_projects(&mut self, projects: Vec<i32>) {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `kty` is never read
[INFO] [stdout]   --> src/api/auth.rs:63:5
[INFO] [stdout]    |
[INFO] [stdout] 62 | struct Jwk {
[INFO] [stdout]    |        --- field in this struct
[INFO] [stdout] 63 |     kty: String,
[INFO] [stdout]    |     ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Jwk` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `content` is never read
[INFO] [stdout]    --> src/model/llm.rs:360:5
[INFO] [stdout]     |
[INFO] [stdout] 357 | pub struct ChatBot {
[INFO] [stdout]     |            ------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 360 |     content: Option<String>,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]    --> src/model/util.rs:139:10
[INFO] [stdout]     |
[INFO] [stdout] 139 |     for (i, entity_type) in entity_types.iter().enumerate() {
[INFO] [stdout]     |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: proc-macro derive panicked
[INFO] [stdout]   --> src/bin/biomedgps.rs:91:10
[INFO] [stdout]    |
[INFO] [stdout] 91 | #[derive(RustEmbed)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: message: #[derive(RustEmbed)] folder '/opt/rustwide/workdir/assets/' does not exist. cwd: '/opt/rustwide/workdir'
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: proc-macro derive panicked
[INFO] [stdout]   --> src/bin/biomedgps.rs:91:10
[INFO] [stdout]    |
[INFO] [stdout] 91 | #[derive(RustEmbed)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: message: #[derive(RustEmbed)] folder '/opt/rustwide/workdir/assets/' does not exist. cwd: '/opt/rustwide/workdir'
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/biomedgps.rs:3:1
[INFO] [stdout]   |
[INFO] [stdout] 3 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/biomedgps.rs:3:1
[INFO] [stdout]   |
[INFO] [stdout] 3 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/model/kge.rs:589:17
[INFO] [stdout]     |
[INFO] [stdout] 589 |             Err(e) => {
[INFO] [stdout]     |                 ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/model/kge.rs:610:17
[INFO] [stdout]     |
[INFO] [stdout] 610 |             Err(e) => {
[INFO] [stdout]     |                 ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `get` found for struct `Assets` in the current scope
[INFO] [stdout]    --> src/bin/biomedgps.rs:106:23
[INFO] [stdout]     |
[INFO] [stdout]  93 | pub struct Assets;
[INFO] [stdout]     | ----------------- function or associated item `get` not found for this struct
[INFO] [stdout] ...
[INFO] [stdout] 106 |         match Assets::get("index.html") {
[INFO] [stdout]     |                       ^^^ function or associated item not found in `Assets`
[INFO] [stdout]     |
[INFO] [stdout]     = help: items from traits can only be used if the trait is implemented and in scope
[INFO] [stdout]     = note: the following traits define an item `get`, perhaps you need to implement one of them:
[INFO] [stdout]             candidate #1: `RustEmbed`
[INFO] [stdout]             candidate #2: `SliceIndex`
[INFO] [stdout]             candidate #3: `polars_core::chunked_array::ops::TakeRandom`
[INFO] [stdout]             candidate #4: `polars_core::chunked_array::ops::TakeRandomUtf8`
[INFO] [stdout]             candidate #5: `polars_core::datatypes::static_array::StaticArray`
[INFO] [stdout]             candidate #6: `polars_core::series::series_trait::SeriesTrait`
[INFO] [stdout]             candidate #7: `rustls::client::client_conn::StoresClientSessions`
[INFO] [stdout]             candidate #8: `rustls::server::server_conn::StoresServerSessions`
[INFO] [stdout]             candidate #9: `rustls::server::server_conn::StoresServerSessions`
[INFO] [stdout]             candidate #10: `sqlx_core::row::Row`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no function or associated item named `get` found for struct `Assets` in the current scope
[INFO] [stdout]    --> src/bin/biomedgps.rs:106:23
[INFO] [stdout]     |
[INFO] [stdout]  93 | pub struct Assets;
[INFO] [stdout]     | ----------------- function or associated item `get` not found for this struct
[INFO] [stdout] ...
[INFO] [stdout] 106 |         match Assets::get("index.html") {
[INFO] [stdout]     |                       ^^^ function or associated item not found in `Assets`
[INFO] [stdout]     |
[INFO] [stdout]     = help: items from traits can only be used if the trait is implemented and in scope
[INFO] [stdout]     = note: the following traits define an item `get`, perhaps you need to implement one of them:
[INFO] [stdout]             candidate #1: `RustEmbed`
[INFO] [stdout]             candidate #2: `SliceIndex`
[INFO] [stdout]             candidate #3: `polars_core::chunked_array::ops::TakeRandom`
[INFO] [stdout]             candidate #4: `polars_core::chunked_array::ops::TakeRandomUtf8`
[INFO] [stdout]             candidate #5: `polars_core::datatypes::static_array::StaticArray`
[INFO] [stdout]             candidate #6: `polars_core::series::series_trait::SeriesTrait`
[INFO] [stdout]             candidate #7: `rustls::client::client_conn::StoresClientSessions`
[INFO] [stdout]             candidate #8: `rustls::server::server_conn::StoresServerSessions`
[INFO] [stdout]             candidate #9: `rustls::server::server_conn::StoresServerSessions`
[INFO] [stdout]             candidate #10: `sqlx_core::row::Row`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0277]: the trait bound `Assets: RustEmbed` is not satisfied
[INFO] [stdout]    --> src/bin/biomedgps.rs:323:30
[INFO] [stdout]     |
[INFO] [stdout] 323 |             .nest("/assets", EmbeddedFilesEndpoint::<Assets>::new())
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ unsatisfied trait bound
[INFO] [stdout]     |
[INFO] [stdout] help: the trait `RustEmbed` is not implemented for `Assets`
[INFO] [stdout]    --> src/bin/biomedgps.rs:93:1
[INFO] [stdout]     |
[INFO] [stdout]  93 | pub struct Assets;
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^
[INFO] [stdout] note: required by a bound in `EmbeddedFilesEndpoint`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/poem-1.3.56/src/endpoint/embed.rs:64:37
[INFO] [stdout]     |
[INFO] [stdout]  64 | pub struct EmbeddedFilesEndpoint<E: RustEmbed + Send + Sync> {
[INFO] [stdout]     |                                     ^^^^^^^^^ required by this bound in `EmbeddedFilesEndpoint`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0277]: the trait bound `Assets: RustEmbed` is not satisfied
[INFO] [stdout]    --> src/bin/biomedgps.rs:323:30
[INFO] [stdout]     |
[INFO] [stdout] 323 |             .nest("/assets", EmbeddedFilesEndpoint::<Assets>::new())
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ unsatisfied trait bound
[INFO] [stdout]     |
[INFO] [stdout] help: the trait `RustEmbed` is not implemented for `Assets`
[INFO] [stdout]    --> src/bin/biomedgps.rs:93:1
[INFO] [stdout]     |
[INFO] [stdout]  93 | pub struct Assets;
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^
[INFO] [stdout] note: required by a bound in `EmbeddedFilesEndpoint`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/poem-1.3.56/src/endpoint/embed.rs:64:37
[INFO] [stdout]     |
[INFO] [stdout]  64 | pub struct EmbeddedFilesEndpoint<E: RustEmbed + Send + Sync> {
[INFO] [stdout]     |                                     ^^^^^^^^^ required by this bound in `EmbeddedFilesEndpoint`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: the function or associated item `new` exists for struct `EmbeddedFilesEndpoint<Assets>`, but its trait bounds were not satisfied
[INFO] [stdout]    --> src/bin/biomedgps.rs:323:63
[INFO] [stdout]     |
[INFO] [stdout]  93 | pub struct Assets;
[INFO] [stdout]     | ----------------- doesn't satisfy `Assets: RustEmbed`
[INFO] [stdout] ...
[INFO] [stdout] 323 |             .nest("/assets", EmbeddedFilesEndpoint::<Assets>::new())
[INFO] [stdout]     |                                                               ^^^ function or associated item cannot be called on `EmbeddedFilesEndpoint<Assets>` due to unsatisfied trait bounds
[INFO] [stdout]     |
[INFO] [stdout]     = note: the following trait bounds were not satisfied:
[INFO] [stdout]             `Assets: RustEmbed`
[INFO] [stdout] note: the trait `RustEmbed` must be implemented
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-embed-6.7.0/src/lib.rs:32:1
[INFO] [stdout]     |
[INFO] [stdout]  32 | pub trait RustEmbed {
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: the function or associated item `new` exists for struct `EmbeddedFilesEndpoint<Assets>`, but its trait bounds were not satisfied
[INFO] [stdout]    --> src/bin/biomedgps.rs:323:63
[INFO] [stdout]     |
[INFO] [stdout]  93 | pub struct Assets;
[INFO] [stdout]     | ----------------- doesn't satisfy `Assets: RustEmbed`
[INFO] [stdout] ...
[INFO] [stdout] 323 |             .nest("/assets", EmbeddedFilesEndpoint::<Assets>::new())
[INFO] [stdout]     |                                                               ^^^ function or associated item cannot be called on `EmbeddedFilesEndpoint<Assets>` due to unsatisfied trait bounds
[INFO] [stdout]     |
[INFO] [stdout]     = note: the following trait bounds were not satisfied:
[INFO] [stdout]             `Assets: RustEmbed`
[INFO] [stdout] note: the trait `RustEmbed` must be implemented
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-embed-6.7.0/src/lib.rs:32:1
[INFO] [stdout]     |
[INFO] [stdout]  32 | pub trait RustEmbed {
[INFO] [stdout]     | ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0277, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0277`.
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0277, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0277`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `biomedgps` (bin "biomedgps" test) due to 4 previous errors; 1 warning emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `biomedgps` (bin "biomedgps") due to 4 previous errors; 1 warning emitted
[INFO] [stdout] warning: value assigned to `topk_pairs` is never read
[INFO] [stdout]    --> src/query_builder/sql_builder.rs:293:26
[INFO] [stdout]     |
[INFO] [stdout] 293 |     let mut topk_pairs = Vec::new();
[INFO] [stdout]     |                          ^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `host` is never read
[INFO] [stdout]     --> src/lib.rs:1158:20
[INFO] [stdout]      |
[INFO] [stdout] 1158 |     let mut host = "".to_string();
[INFO] [stdout]      |                    ^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `username` is never read
[INFO] [stdout]     --> src/lib.rs:1159:24
[INFO] [stdout]      |
[INFO] [stdout] 1159 |     let mut username = "".to_string();
[INFO] [stdout]      |                        ^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `password` is never read
[INFO] [stdout]     --> src/lib.rs:1160:24
[INFO] [stdout]      |
[INFO] [stdout] 1160 |     let mut password = "".to_string();
[INFO] [stdout]      |                        ^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `add_organizations` and `add_projects` are never used
[INFO] [stdout]   --> src/api/auth.rs:35:8
[INFO] [stdout]    |
[INFO] [stdout] 26 | impl User {
[INFO] [stdout]    | --------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 35 |     fn add_organizations(&mut self, organizations: Vec<i32>) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 39 |     fn add_projects(&mut self, projects: Vec<i32>) {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `kty` is never read
[INFO] [stdout]   --> src/api/auth.rs:63:5
[INFO] [stdout]    |
[INFO] [stdout] 62 | struct Jwk {
[INFO] [stdout]    |        --- field in this struct
[INFO] [stdout] 63 |     kty: String,
[INFO] [stdout]    |     ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Jwk` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `content` is never read
[INFO] [stdout]    --> src/model/llm.rs:360:5
[INFO] [stdout]     |
[INFO] [stdout] 357 | pub struct ChatBot {
[INFO] [stdout]     |            ------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 360 |     content: Option<String>,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `OPENAI_API_KEY` should have a snake case name
[INFO] [stdout]    --> src/model/llm.rs:416:13
[INFO] [stdout]     |
[INFO] [stdout] 416 |         let OPENAI_API_KEY = std::env::var("OPENAI_API_KEY").unwrap();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `openai_api_key`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "84f4364291ce772f3c4221bc87305999c25c1b8a1a0b5d7bd36b8f22f92c9606", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "84f4364291ce772f3c4221bc87305999c25c1b8a1a0b5d7bd36b8f22f92c9606", kill_on_drop: false }`
[INFO] [stdout] 84f4364291ce772f3c4221bc87305999c25c1b8a1a0b5d7bd36b8f22f92c9606
