[INFO] fetching crate kira-protein-pruner 0.1.1...
[INFO] checking kira-protein-pruner-0.1.1 against 1.95.0-beta.7 for beta-1.95-4
[INFO] extracting crate kira-protein-pruner 0.1.1 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate kira-protein-pruner 0.1.1
[INFO] finished tweaking crates.io crate kira-protein-pruner 0.1.1
[INFO] tweaked toml for crates.io crate kira-protein-pruner 0.1.1 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate kira-protein-pruner 0.1.1 on toolchain 1.95.0-beta.7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0-beta.7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate kira-protein-pruner 0.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0-beta.7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0-beta.7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0c72ea85dbb54e99c9ba5b0cc0dfa0834c5fb3551912646e22e0a494412a0083
[INFO] running `Command { std: "docker" "start" "-a" "0c72ea85dbb54e99c9ba5b0cc0dfa0834c5fb3551912646e22e0a494412a0083", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0c72ea85dbb54e99c9ba5b0cc0dfa0834c5fb3551912646e22e0a494412a0083", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c72ea85dbb54e99c9ba5b0cc0dfa0834c5fb3551912646e22e0a494412a0083", kill_on_drop: false }`
[INFO] [stdout] 0c72ea85dbb54e99c9ba5b0cc0dfa0834c5fb3551912646e22e0a494412a0083
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0-beta.7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3793dcb1e24afc1ec6483939fb6038209f417331a26654c1783707245c3f2b6e
[INFO] running `Command { std: "docker" "start" "-a" "3793dcb1e24afc1ec6483939fb6038209f417331a26654c1783707245c3f2b6e", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.23
[INFO] [stderr]    Compiling zerocopy v0.8.39
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]    Compiling anyhow v1.0.101
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]    Compiling pest v2.8.6
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling zmij v1.0.20
[INFO] [stderr]     Checking regex-syntax v0.8.9
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking clap_builder v4.5.57
[INFO] [stderr]     Checking env_home v0.1.0
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]     Checking wyhash v0.6.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking kira-mmcif v0.1.0
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]    Compiling kira-protein-pruner v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling pest_meta v2.8.6
[INFO] [stderr]    Compiling libdeflate-sys v1.25.2
[INFO] [stderr]    Compiling libz-ng-sys v1.1.23
[INFO] [stderr]     Checking which v8.0.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking libdeflater v1.25.2
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling pest_generator v2.8.6
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling pest_derive v2.8.6
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking clap v4.5.57
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking kira_kv_engine v0.2.4
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stdout] warning: value assigned to `graph_storage` is never read
[INFO] [stdout]    --> src/pipeline/interface/surface_analysis.rs:119:54
[INFO] [stdout]     |
[INFO] [stdout] 119 |     let mut graph_storage: Option<Vec<Vec<usize>>> = None;
[INFO] [stdout]     |                                                      ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `graph_storage` is never read
[INFO] [stdout]    --> src/pipeline/interface/surface_analysis.rs:119:54
[INFO] [stdout]     |
[INFO] [stdout] 119 |     let mut graph_storage: Option<Vec<Vec<usize>>> = None;
[INFO] [stdout]     |                                                      ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compute_interface_stats` is never used
[INFO] [stdout]   --> src/pipeline/interface/surface_analysis.rs:86:15
[INFO] [stdout]    |
[INFO] [stdout] 86 | pub(crate) fn compute_interface_stats(
[INFO] [stdout]    |               ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compute_interface_stats` is never used
[INFO] [stdout]   --> src/pipeline/interface/surface_analysis.rs:86:15
[INFO] [stdout]    |
[INFO] [stdout] 86 | pub(crate) fn compute_interface_stats(
[INFO] [stdout]    |               ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: comparison is useless due to type limits
[INFO] [stdout]   --> src/pipeline/geometry/tests.rs:77:13
[INFO] [stdout]    |
[INFO] [stdout] 77 |     assert!(report.total_hbonds >= 0);
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_comparisons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: comparison is useless due to type limits
[INFO] [stdout]   --> src/pipeline/geometry/tests.rs:87:13
[INFO] [stdout]    |
[INFO] [stdout] 87 |     assert!(report.unsatisfied_buried_polar_count >= 0);
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: comparison is useless due to type limits
[INFO] [stdout]   --> src/pipeline/structure_topology/tests.rs:44:13
[INFO] [stdout]    |
[INFO] [stdout] 44 |     assert!(report.short_helix_segments >= 0);
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: comparison is useless due to type limits
[INFO] [stdout]   --> src/pipeline/structure_topology/tests.rs:62:13
[INFO] [stdout]    |
[INFO] [stdout] 62 |     assert!(report.total_contacts >= 0);
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: comparison is useless due to type limits
[INFO] [stdout]   --> src/pipeline/structure_topology/tests.rs:71:13
[INFO] [stdout]    |
[INFO] [stdout] 71 |     assert!(report.component_count >= 0);
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.58s
[INFO] running `Command { std: "docker" "inspect" "3793dcb1e24afc1ec6483939fb6038209f417331a26654c1783707245c3f2b6e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3793dcb1e24afc1ec6483939fb6038209f417331a26654c1783707245c3f2b6e", kill_on_drop: false }`
[INFO] [stdout] 3793dcb1e24afc1ec6483939fb6038209f417331a26654c1783707245c3f2b6e
