[INFO] fetching crate rvdna 0.3.0...
[INFO] testing rvdna-0.3.0 against 1.94.0 for beta-1.95-1
[INFO] extracting crate rvdna 0.3.0 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate rvdna 0.3.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rvdna 0.3.0
[INFO] tweaked toml for crates.io crate rvdna 0.3.0 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rvdna 0.3.0 on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rvdna 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:79:13
[INFO] [stdout]    |
[INFO] [stdout] 79 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `nucleotide_to_bits` is never used
[INFO] [stdout]   --> src/kmer.rs:30:4
[INFO] [stdout]    |
[INFO] [stdout] 30 | fn nucleotide_to_bits(nuc: u8) -> Option<u8> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     pub name: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub unit: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub normal_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub normal_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub critical_low: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub critical_high: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub category: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 |     CriticalLow,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     Low,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 |     Normal,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     High,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 31 |     CriticalHigh,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:87:5
[INFO] [stdout]    |
[INFO] [stdout] 87 |     pub category: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:88:5
[INFO] [stdout]    |
[INFO] [stdout] 88 |     pub score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:89:5
[INFO] [stdout]    |
[INFO] [stdout] 89 |     pub confidence: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:90:5
[INFO] [stdout]    |
[INFO] [stdout] 90 |     pub contributing_variants: Vec<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:96:5
[INFO] [stdout]    |
[INFO] [stdout] 96 |     pub subject_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:97:5
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub timestamp: i64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:98:5
[INFO] [stdout]    |
[INFO] [stdout] 98 |     pub category_scores: HashMap<String, CategoryScore>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:99:5
[INFO] [stdout]    |
[INFO] [stdout] 99 |     pub global_risk_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:100:5
[INFO] [stdout]     |
[INFO] [stdout] 100 |     pub profile_vector: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:101:5
[INFO] [stdout]     |
[INFO] [stdout] 101 |     pub biomarker_values: HashMap<String, f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub base_interval_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub noise_amplitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub drift_rate: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub anomaly_probability: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub anomaly_magnitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub num_biomarkers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub window_size: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 43 |     pub timestamp_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub biomarker_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub value: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 |     pub reference_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     pub reference_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     pub is_anomaly: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:49:5
[INFO] [stdout]    |
[INFO] [stdout] 49 |     pub z_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]   --> src/biomarker_stream.rs:64:5
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn new(capacity: usize) -> Self {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:69:5
[INFO] [stdout]    |
[INFO] [stdout] 69 |     pub fn push(&mut self, item: T) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 |     pub fn iter(&self) -> impl Iterator<Item = &T> {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     pub fn len(&self) -> usize { self.len }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:84:5
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub fn is_full(&self) -> bool { self.len == self.capacity }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:86:5
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn clear(&mut self) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:152:5
[INFO] [stdout]     |
[INFO] [stdout] 152 |     pub mean: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:153:5
[INFO] [stdout]     |
[INFO] [stdout] 153 |     pub variance: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:154:5
[INFO] [stdout]     |
[INFO] [stdout] 154 |     pub min: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:155:5
[INFO] [stdout]     |
[INFO] [stdout] 155 |     pub max: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:156:5
[INFO] [stdout]     |
[INFO] [stdout] 156 |     pub count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:157:5
[INFO] [stdout]     |
[INFO] [stdout] 157 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:158:5
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub trend_slope: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:159:5
[INFO] [stdout]     |
[INFO] [stdout] 159 |     pub ema: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:160:5
[INFO] [stdout]     |
[INFO] [stdout] 160 |     pub cusum_pos: f64,          // CUSUM positive direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:161:5
[INFO] [stdout]     |
[INFO] [stdout] 161 |     pub cusum_neg: f64,          // CUSUM negative direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:162:5
[INFO] [stdout]     |
[INFO] [stdout] 162 |     pub changepoint_detected: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:177:5
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub accepted: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:178:5
[INFO] [stdout]     |
[INFO] [stdout] 178 |     pub z_score: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:179:5
[INFO] [stdout]     |
[INFO] [stdout] 179 |     pub is_anomaly: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:180:5
[INFO] [stdout]     |
[INFO] [stdout] 180 |     pub current_trend: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:185:5
[INFO] [stdout]     |
[INFO] [stdout] 185 |     pub total_readings: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:186:5
[INFO] [stdout]     |
[INFO] [stdout] 186 |     pub anomaly_count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:187:5
[INFO] [stdout]     |
[INFO] [stdout] 187 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:188:5
[INFO] [stdout]     |
[INFO] [stdout] 188 |     pub biomarker_stats: HashMap<String, StreamStats>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:189:5
[INFO] [stdout]     |
[INFO] [stdout] 189 |     pub throughput_readings_per_sec: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]    --> src/biomarker_stream.rs:214:5
[INFO] [stdout]     |
[INFO] [stdout] 214 |     pub fn new(config: StreamConfig) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:223:5
[INFO] [stdout]     |
[INFO] [stdout] 223 |     pub fn process_reading(&mut self, reading: &BiomarkerReading) -> ProcessingResult {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:275:5
[INFO] [stdout]     |
[INFO] [stdout] 275 |     pub fn get_stats(&self, biomarker_id: &str) -> Option<&StreamStats> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:279:5
[INFO] [stdout]     |
[INFO] [stdout] 279 |     pub fn summary(&self) -> StreamSummary {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:196:5
[INFO] [stdout]     |
[INFO] [stdout] 196 |     pub name: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:197:5
[INFO] [stdout]     |
[INFO] [stdout] 197 |     pub snp_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:198:5
[INFO] [stdout]     |
[INFO] [stdout] 198 |     pub het_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:199:5
[INFO] [stdout]     |
[INFO] [stdout] 199 |     pub het_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:200:5
[INFO] [stdout]     |
[INFO] [stdout] 200 |     pub signature: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:378:5
[INFO] [stdout]     |
[INFO] [stdout] 378 |     pub gene: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:379:5
[INFO] [stdout]     |
[INFO] [stdout] 379 |     pub allele1: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:380:5
[INFO] [stdout]     |
[INFO] [stdout] 380 |     pub allele2: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:381:5
[INFO] [stdout]     |
[INFO] [stdout] 381 |     pub activity: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:382:5
[INFO] [stdout]     |
[INFO] [stdout] 382 |     pub phenotype: MetabolizerPhenotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:539:5
[INFO] [stdout]     |
[INFO] [stdout] 539 |     pub data: GenotypeData,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:540:5
[INFO] [stdout]     |
[INFO] [stdout] 540 |     pub cyp2d6: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:541:5
[INFO] [stdout]     |
[INFO] [stdout] 541 |     pub cyp2c19: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:542:5
[INFO] [stdout]     |
[INFO] [stdout] 542 |     pub cyp2d6_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:543:5
[INFO] [stdout]     |
[INFO] [stdout] 543 |     pub cyp2c19_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:544:5
[INFO] [stdout]     |
[INFO] [stdout] 544 |     pub health_variants: Vec<HealthVariantResult>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:545:5
[INFO] [stdout]     |
[INFO] [stdout] 545 |     pub apoe: ApoeResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:546:5
[INFO] [stdout]     |
[INFO] [stdout] 546 |     pub mthfr: MthfrResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:547:5
[INFO] [stdout]     |
[INFO] [stdout] 547 |     pub pain: Option<PainProfile>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:548:5
[INFO] [stdout]     |
[INFO] [stdout] 548 |     pub region_qc: Vec<RegionQc>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:549:5
[INFO] [stdout]     |
[INFO] [stdout] 549 |     pub similarities: Vec<(String, String, f32)>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:550:5
[INFO] [stdout]     |
[INFO] [stdout] 550 |     pub homozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:551:5
[INFO] [stdout]     |
[INFO] [stdout] 551 |     pub heterozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:552:5
[INFO] [stdout]     |
[INFO] [stdout] 552 |     pub indels: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:553:5
[INFO] [stdout]     |
[INFO] [stdout] 553 |     pub het_ratio: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:554:5
[INFO] [stdout]     |
[INFO] [stdout] 554 |     pub elapsed_ms: u128,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:299:5
[INFO] [stdout]     |
[INFO] [stdout] 299 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:300:5
[INFO] [stdout]     |
[INFO] [stdout] 300 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:301:5
[INFO] [stdout]     |
[INFO] [stdout] 301 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:413:9
[INFO] [stdout]     |
[INFO] [stdout] 413 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:414:9
[INFO] [stdout]     |
[INFO] [stdout] 414 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:415:9
[INFO] [stdout]     |
[INFO] [stdout] 415 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:420:9
[INFO] [stdout]     |
[INFO] [stdout] 420 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:421:9
[INFO] [stdout]     |
[INFO] [stdout] 421 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:425:9
[INFO] [stdout]     |
[INFO] [stdout] 425 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:426:9
[INFO] [stdout]     |
[INFO] [stdout] 426 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:427:9
[INFO] [stdout]     |
[INFO] [stdout] 427 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:429:9
[INFO] [stdout]     |
[INFO] [stdout] 429 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:464:5
[INFO] [stdout]     |
[INFO] [stdout] 464 |     A,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:465:5
[INFO] [stdout]     |
[INFO] [stdout] 465 |     C,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:466:5
[INFO] [stdout]     |
[INFO] [stdout] 466 |     D,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:467:5
[INFO] [stdout]     |
[INFO] [stdout] 467 |     E,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:468:5
[INFO] [stdout]     |
[INFO] [stdout] 468 |     F,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:469:5
[INFO] [stdout]     |
[INFO] [stdout] 469 |     G,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:470:5
[INFO] [stdout]     |
[INFO] [stdout] 470 |     H,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:471:5
[INFO] [stdout]     |
[INFO] [stdout] 471 |     I,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:472:5
[INFO] [stdout]     |
[INFO] [stdout] 472 |     K,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:473:5
[INFO] [stdout]     |
[INFO] [stdout] 473 |     L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:474:5
[INFO] [stdout]     |
[INFO] [stdout] 474 |     M,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:475:5
[INFO] [stdout]     |
[INFO] [stdout] 475 |     N,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:476:5
[INFO] [stdout]     |
[INFO] [stdout] 476 |     P,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:477:5
[INFO] [stdout]     |
[INFO] [stdout] 477 |     Q,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     R,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:479:5
[INFO] [stdout]     |
[INFO] [stdout] 479 |     S,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:480:5
[INFO] [stdout]     |
[INFO] [stdout] 480 |     T,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:481:5
[INFO] [stdout]     |
[INFO] [stdout] 481 |     V,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:482:5
[INFO] [stdout]     |
[INFO] [stdout] 482 |     W,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:483:5
[INFO] [stdout]     |
[INFO] [stdout] 483 |     Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:21:15
[INFO] [stdout]    |
[INFO] [stdout] 21 |         self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor,
[INFO] [stdout]    |               ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:93:9
[INFO] [stdout]    |
[INFO] [stdout] 93 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] running `Command { std: "docker" "inspect" "5be0bb093de6dbbb414519ba0d81b466073a9660a8891c21ce413bdf102ae2bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5be0bb093de6dbbb414519ba0d81b466073a9660a8891c21ce413bdf102ae2bf", kill_on_drop: false }`
[INFO] [stdout] 5be0bb093de6dbbb414519ba0d81b466073a9660a8891c21ce413bdf102ae2bf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1382a84e234d5d5f52740c65a8d2e8005b78dd0612c695c4845ba4f4d5d29402
[INFO] running `Command { std: "docker" "start" "-a" "1382a84e234d5d5f52740c65a8d2e8005b78dd0612c695c4845ba4f4d5d29402", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.31
[INFO] [stderr]    Compiling zerocopy-derive v0.8.31
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling sysctl v0.5.5
[INFO] [stderr]    Compiling clap_lex v0.7.6
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling clap_builder v4.5.53
[INFO] [stderr]    Compiling mmap-rs v0.6.1
[INFO] [stderr]    Compiling anndists v0.1.3
[INFO] [stderr]    Compiling clap v4.5.53
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling hnsw_rs v0.3.3
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling ruvector-attention v0.1.31
[INFO] [stderr]    Compiling ruvector-solver v2.0.4
[INFO] [stderr]    Compiling ruvector-math v2.0.4
[INFO] [stderr]    Compiling ruvector-core v2.0.4
[INFO] [stderr]    Compiling ruvector-core v0.1.31
[INFO] [stderr]    Compiling ruvector-dag v0.1.0
[INFO] [stderr]    Compiling ruvector-collections v2.0.3
[INFO] [stderr]    Compiling ruvector-graph v2.0.4
[INFO] [stderr]    Compiling ruvector-filter v2.0.3
[INFO] [stderr]    Compiling ruvector-gnn v2.0.4
[INFO] [stderr]    Compiling rvdna v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:79:13
[INFO] [stdout]    |
[INFO] [stdout] 79 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:79:13
[INFO] [stdout]    |
[INFO] [stdout] 79 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `nucleotide_to_bits` is never used
[INFO] [stdout]   --> src/kmer.rs:30:4
[INFO] [stdout]    |
[INFO] [stdout] 30 | fn nucleotide_to_bits(nuc: u8) -> Option<u8> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     pub name: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub unit: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub normal_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub normal_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub critical_low: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub critical_high: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub category: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 |     CriticalLow,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     Low,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 |     Normal,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     High,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 31 |     CriticalHigh,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:87:5
[INFO] [stdout]    |
[INFO] [stdout] 87 |     pub category: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:88:5
[INFO] [stdout]    |
[INFO] [stdout] 88 |     pub score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:89:5
[INFO] [stdout]    |
[INFO] [stdout] 89 |     pub confidence: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:90:5
[INFO] [stdout]    |
[INFO] [stdout] 90 |     pub contributing_variants: Vec<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:96:5
[INFO] [stdout]    |
[INFO] [stdout] 96 |     pub subject_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:97:5
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub timestamp: i64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:98:5
[INFO] [stdout]    |
[INFO] [stdout] 98 |     pub category_scores: HashMap<String, CategoryScore>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:99:5
[INFO] [stdout]    |
[INFO] [stdout] 99 |     pub global_risk_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:100:5
[INFO] [stdout]     |
[INFO] [stdout] 100 |     pub profile_vector: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:101:5
[INFO] [stdout]     |
[INFO] [stdout] 101 |     pub biomarker_values: HashMap<String, f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub base_interval_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub noise_amplitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub drift_rate: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub anomaly_probability: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub anomaly_magnitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub num_biomarkers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub window_size: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 43 |     pub timestamp_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub biomarker_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub value: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 |     pub reference_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     pub reference_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     pub is_anomaly: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:49:5
[INFO] [stdout]    |
[INFO] [stdout] 49 |     pub z_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]   --> src/biomarker_stream.rs:64:5
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn new(capacity: usize) -> Self {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:69:5
[INFO] [stdout]    |
[INFO] [stdout] 69 |     pub fn push(&mut self, item: T) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 |     pub fn iter(&self) -> impl Iterator<Item = &T> {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     pub fn len(&self) -> usize { self.len }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:84:5
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub fn is_full(&self) -> bool { self.len == self.capacity }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:86:5
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn clear(&mut self) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:152:5
[INFO] [stdout]     |
[INFO] [stdout] 152 |     pub mean: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:153:5
[INFO] [stdout]     |
[INFO] [stdout] 153 |     pub variance: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:154:5
[INFO] [stdout]     |
[INFO] [stdout] 154 |     pub min: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:155:5
[INFO] [stdout]     |
[INFO] [stdout] 155 |     pub max: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:156:5
[INFO] [stdout]     |
[INFO] [stdout] 156 |     pub count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:157:5
[INFO] [stdout]     |
[INFO] [stdout] 157 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:158:5
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub trend_slope: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:159:5
[INFO] [stdout]     |
[INFO] [stdout] 159 |     pub ema: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:160:5
[INFO] [stdout]     |
[INFO] [stdout] 160 |     pub cusum_pos: f64,          // CUSUM positive direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:161:5
[INFO] [stdout]     |
[INFO] [stdout] 161 |     pub cusum_neg: f64,          // CUSUM negative direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:162:5
[INFO] [stdout]     |
[INFO] [stdout] 162 |     pub changepoint_detected: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:177:5
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub accepted: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:178:5
[INFO] [stdout]     |
[INFO] [stdout] 178 |     pub z_score: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:179:5
[INFO] [stdout]     |
[INFO] [stdout] 179 |     pub is_anomaly: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:180:5
[INFO] [stdout]     |
[INFO] [stdout] 180 |     pub current_trend: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:185:5
[INFO] [stdout]     |
[INFO] [stdout] 185 |     pub total_readings: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:186:5
[INFO] [stdout]     |
[INFO] [stdout] 186 |     pub anomaly_count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:187:5
[INFO] [stdout]     |
[INFO] [stdout] 187 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:188:5
[INFO] [stdout]     |
[INFO] [stdout] 188 |     pub biomarker_stats: HashMap<String, StreamStats>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:189:5
[INFO] [stdout]     |
[INFO] [stdout] 189 |     pub throughput_readings_per_sec: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]    --> src/biomarker_stream.rs:214:5
[INFO] [stdout]     |
[INFO] [stdout] 214 |     pub fn new(config: StreamConfig) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:223:5
[INFO] [stdout]     |
[INFO] [stdout] 223 |     pub fn process_reading(&mut self, reading: &BiomarkerReading) -> ProcessingResult {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:275:5
[INFO] [stdout]     |
[INFO] [stdout] 275 |     pub fn get_stats(&self, biomarker_id: &str) -> Option<&StreamStats> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:279:5
[INFO] [stdout]     |
[INFO] [stdout] 279 |     pub fn summary(&self) -> StreamSummary {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:196:5
[INFO] [stdout]     |
[INFO] [stdout] 196 |     pub name: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:197:5
[INFO] [stdout]     |
[INFO] [stdout] 197 |     pub snp_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:198:5
[INFO] [stdout]     |
[INFO] [stdout] 198 |     pub het_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:199:5
[INFO] [stdout]     |
[INFO] [stdout] 199 |     pub het_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:200:5
[INFO] [stdout]     |
[INFO] [stdout] 200 |     pub signature: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:378:5
[INFO] [stdout]     |
[INFO] [stdout] 378 |     pub gene: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:379:5
[INFO] [stdout]     |
[INFO] [stdout] 379 |     pub allele1: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:380:5
[INFO] [stdout]     |
[INFO] [stdout] 380 |     pub allele2: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:381:5
[INFO] [stdout]     |
[INFO] [stdout] 381 |     pub activity: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:382:5
[INFO] [stdout]     |
[INFO] [stdout] 382 |     pub phenotype: MetabolizerPhenotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:539:5
[INFO] [stdout]     |
[INFO] [stdout] 539 |     pub data: GenotypeData,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:540:5
[INFO] [stdout]     |
[INFO] [stdout] 540 |     pub cyp2d6: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:541:5
[INFO] [stdout]     |
[INFO] [stdout] 541 |     pub cyp2c19: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:542:5
[INFO] [stdout]     |
[INFO] [stdout] 542 |     pub cyp2d6_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:543:5
[INFO] [stdout]     |
[INFO] [stdout] 543 |     pub cyp2c19_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:544:5
[INFO] [stdout]     |
[INFO] [stdout] 544 |     pub health_variants: Vec<HealthVariantResult>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:545:5
[INFO] [stdout]     |
[INFO] [stdout] 545 |     pub apoe: ApoeResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:546:5
[INFO] [stdout]     |
[INFO] [stdout] 546 |     pub mthfr: MthfrResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:547:5
[INFO] [stdout]     |
[INFO] [stdout] 547 |     pub pain: Option<PainProfile>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:548:5
[INFO] [stdout]     |
[INFO] [stdout] 548 |     pub region_qc: Vec<RegionQc>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:549:5
[INFO] [stdout]     |
[INFO] [stdout] 549 |     pub similarities: Vec<(String, String, f32)>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:550:5
[INFO] [stdout]     |
[INFO] [stdout] 550 |     pub homozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:551:5
[INFO] [stdout]     |
[INFO] [stdout] 551 |     pub heterozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:552:5
[INFO] [stdout]     |
[INFO] [stdout] 552 |     pub indels: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:553:5
[INFO] [stdout]     |
[INFO] [stdout] 553 |     pub het_ratio: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:554:5
[INFO] [stdout]     |
[INFO] [stdout] 554 |     pub elapsed_ms: u128,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:299:5
[INFO] [stdout]     |
[INFO] [stdout] 299 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:300:5
[INFO] [stdout]     |
[INFO] [stdout] 300 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:301:5
[INFO] [stdout]     |
[INFO] [stdout] 301 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:413:9
[INFO] [stdout]     |
[INFO] [stdout] 413 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:414:9
[INFO] [stdout]     |
[INFO] [stdout] 414 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:415:9
[INFO] [stdout]     |
[INFO] [stdout] 415 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:420:9
[INFO] [stdout]     |
[INFO] [stdout] 420 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:421:9
[INFO] [stdout]     |
[INFO] [stdout] 421 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:425:9
[INFO] [stdout]     |
[INFO] [stdout] 425 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:426:9
[INFO] [stdout]     |
[INFO] [stdout] 426 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:427:9
[INFO] [stdout]     |
[INFO] [stdout] 427 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:429:9
[INFO] [stdout]     |
[INFO] [stdout] 429 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:464:5
[INFO] [stdout]     |
[INFO] [stdout] 464 |     A,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:465:5
[INFO] [stdout]     |
[INFO] [stdout] 465 |     C,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:466:5
[INFO] [stdout]     |
[INFO] [stdout] 466 |     D,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:467:5
[INFO] [stdout]     |
[INFO] [stdout] 467 |     E,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:468:5
[INFO] [stdout]     |
[INFO] [stdout] 468 |     F,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:469:5
[INFO] [stdout]     |
[INFO] [stdout] 469 |     G,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:470:5
[INFO] [stdout]     |
[INFO] [stdout] 470 |     H,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:471:5
[INFO] [stdout]     |
[INFO] [stdout] 471 |     I,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:472:5
[INFO] [stdout]     |
[INFO] [stdout] 472 |     K,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:473:5
[INFO] [stdout]     |
[INFO] [stdout] 473 |     L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:474:5
[INFO] [stdout]     |
[INFO] [stdout] 474 |     M,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:475:5
[INFO] [stdout]     |
[INFO] [stdout] 475 |     N,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:476:5
[INFO] [stdout]     |
[INFO] [stdout] 476 |     P,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:477:5
[INFO] [stdout]     |
[INFO] [stdout] 477 |     Q,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     R,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:479:5
[INFO] [stdout]     |
[INFO] [stdout] 479 |     S,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:480:5
[INFO] [stdout]     |
[INFO] [stdout] 480 |     T,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:481:5
[INFO] [stdout]     |
[INFO] [stdout] 481 |     V,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:482:5
[INFO] [stdout]     |
[INFO] [stdout] 482 |     W,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:483:5
[INFO] [stdout]     |
[INFO] [stdout] 483 |     Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:21:15
[INFO] [stdout]    |
[INFO] [stdout] 21 |         self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor,
[INFO] [stdout]    |               ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:21:15
[INFO] [stdout]    |
[INFO] [stdout] 21 |         self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor,
[INFO] [stdout]    |               ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:93:9
[INFO] [stdout]    |
[INFO] [stdout] 93 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:93:9
[INFO] [stdout]    |
[INFO] [stdout] 93 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     pub name: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub unit: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub normal_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub normal_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub critical_low: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub critical_high: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub category: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 |     CriticalLow,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     Low,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 |     Normal,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     High,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 31 |     CriticalHigh,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:87:5
[INFO] [stdout]    |
[INFO] [stdout] 87 |     pub category: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:88:5
[INFO] [stdout]    |
[INFO] [stdout] 88 |     pub score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:89:5
[INFO] [stdout]    |
[INFO] [stdout] 89 |     pub confidence: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:90:5
[INFO] [stdout]    |
[INFO] [stdout] 90 |     pub contributing_variants: Vec<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:96:5
[INFO] [stdout]    |
[INFO] [stdout] 96 |     pub subject_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:97:5
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub timestamp: i64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:98:5
[INFO] [stdout]    |
[INFO] [stdout] 98 |     pub category_scores: HashMap<String, CategoryScore>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:99:5
[INFO] [stdout]    |
[INFO] [stdout] 99 |     pub global_risk_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:100:5
[INFO] [stdout]     |
[INFO] [stdout] 100 |     pub profile_vector: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:101:5
[INFO] [stdout]     |
[INFO] [stdout] 101 |     pub biomarker_values: HashMap<String, f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub base_interval_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub noise_amplitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub drift_rate: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub anomaly_probability: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub anomaly_magnitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub num_biomarkers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub window_size: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 43 |     pub timestamp_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub biomarker_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub value: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 |     pub reference_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     pub reference_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     pub is_anomaly: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:49:5
[INFO] [stdout]    |
[INFO] [stdout] 49 |     pub z_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]   --> src/biomarker_stream.rs:64:5
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn new(capacity: usize) -> Self {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:69:5
[INFO] [stdout]    |
[INFO] [stdout] 69 |     pub fn push(&mut self, item: T) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 |     pub fn iter(&self) -> impl Iterator<Item = &T> {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     pub fn len(&self) -> usize { self.len }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:84:5
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub fn is_full(&self) -> bool { self.len == self.capacity }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:86:5
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn clear(&mut self) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:152:5
[INFO] [stdout]     |
[INFO] [stdout] 152 |     pub mean: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:153:5
[INFO] [stdout]     |
[INFO] [stdout] 153 |     pub variance: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:154:5
[INFO] [stdout]     |
[INFO] [stdout] 154 |     pub min: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:155:5
[INFO] [stdout]     |
[INFO] [stdout] 155 |     pub max: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:156:5
[INFO] [stdout]     |
[INFO] [stdout] 156 |     pub count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:157:5
[INFO] [stdout]     |
[INFO] [stdout] 157 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:158:5
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub trend_slope: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:159:5
[INFO] [stdout]     |
[INFO] [stdout] 159 |     pub ema: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:160:5
[INFO] [stdout]     |
[INFO] [stdout] 160 |     pub cusum_pos: f64,          // CUSUM positive direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:161:5
[INFO] [stdout]     |
[INFO] [stdout] 161 |     pub cusum_neg: f64,          // CUSUM negative direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:162:5
[INFO] [stdout]     |
[INFO] [stdout] 162 |     pub changepoint_detected: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:177:5
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub accepted: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:178:5
[INFO] [stdout]     |
[INFO] [stdout] 178 |     pub z_score: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:179:5
[INFO] [stdout]     |
[INFO] [stdout] 179 |     pub is_anomaly: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:180:5
[INFO] [stdout]     |
[INFO] [stdout] 180 |     pub current_trend: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:185:5
[INFO] [stdout]     |
[INFO] [stdout] 185 |     pub total_readings: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:186:5
[INFO] [stdout]     |
[INFO] [stdout] 186 |     pub anomaly_count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:187:5
[INFO] [stdout]     |
[INFO] [stdout] 187 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:188:5
[INFO] [stdout]     |
[INFO] [stdout] 188 |     pub biomarker_stats: HashMap<String, StreamStats>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:189:5
[INFO] [stdout]     |
[INFO] [stdout] 189 |     pub throughput_readings_per_sec: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]    --> src/biomarker_stream.rs:214:5
[INFO] [stdout]     |
[INFO] [stdout] 214 |     pub fn new(config: StreamConfig) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:223:5
[INFO] [stdout]     |
[INFO] [stdout] 223 |     pub fn process_reading(&mut self, reading: &BiomarkerReading) -> ProcessingResult {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:275:5
[INFO] [stdout]     |
[INFO] [stdout] 275 |     pub fn get_stats(&self, biomarker_id: &str) -> Option<&StreamStats> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:279:5
[INFO] [stdout]     |
[INFO] [stdout] 279 |     pub fn summary(&self) -> StreamSummary {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:196:5
[INFO] [stdout]     |
[INFO] [stdout] 196 |     pub name: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:197:5
[INFO] [stdout]     |
[INFO] [stdout] 197 |     pub snp_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:198:5
[INFO] [stdout]     |
[INFO] [stdout] 198 |     pub het_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:199:5
[INFO] [stdout]     |
[INFO] [stdout] 199 |     pub het_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:200:5
[INFO] [stdout]     |
[INFO] [stdout] 200 |     pub signature: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:378:5
[INFO] [stdout]     |
[INFO] [stdout] 378 |     pub gene: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:379:5
[INFO] [stdout]     |
[INFO] [stdout] 379 |     pub allele1: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:380:5
[INFO] [stdout]     |
[INFO] [stdout] 380 |     pub allele2: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:381:5
[INFO] [stdout]     |
[INFO] [stdout] 381 |     pub activity: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:382:5
[INFO] [stdout]     |
[INFO] [stdout] 382 |     pub phenotype: MetabolizerPhenotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:539:5
[INFO] [stdout]     |
[INFO] [stdout] 539 |     pub data: GenotypeData,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:540:5
[INFO] [stdout]     |
[INFO] [stdout] 540 |     pub cyp2d6: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:541:5
[INFO] [stdout]     |
[INFO] [stdout] 541 |     pub cyp2c19: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:542:5
[INFO] [stdout]     |
[INFO] [stdout] 542 |     pub cyp2d6_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:543:5
[INFO] [stdout]     |
[INFO] [stdout] 543 |     pub cyp2c19_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:544:5
[INFO] [stdout]     |
[INFO] [stdout] 544 |     pub health_variants: Vec<HealthVariantResult>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:545:5
[INFO] [stdout]     |
[INFO] [stdout] 545 |     pub apoe: ApoeResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:546:5
[INFO] [stdout]     |
[INFO] [stdout] 546 |     pub mthfr: MthfrResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:547:5
[INFO] [stdout]     |
[INFO] [stdout] 547 |     pub pain: Option<PainProfile>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:548:5
[INFO] [stdout]     |
[INFO] [stdout] 548 |     pub region_qc: Vec<RegionQc>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:549:5
[INFO] [stdout]     |
[INFO] [stdout] 549 |     pub similarities: Vec<(String, String, f32)>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:550:5
[INFO] [stdout]     |
[INFO] [stdout] 550 |     pub homozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:551:5
[INFO] [stdout]     |
[INFO] [stdout] 551 |     pub heterozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:552:5
[INFO] [stdout]     |
[INFO] [stdout] 552 |     pub indels: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:553:5
[INFO] [stdout]     |
[INFO] [stdout] 553 |     pub het_ratio: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:554:5
[INFO] [stdout]     |
[INFO] [stdout] 554 |     pub elapsed_ms: u128,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:299:5
[INFO] [stdout]     |
[INFO] [stdout] 299 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:300:5
[INFO] [stdout]     |
[INFO] [stdout] 300 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:301:5
[INFO] [stdout]     |
[INFO] [stdout] 301 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:413:9
[INFO] [stdout]     |
[INFO] [stdout] 413 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:414:9
[INFO] [stdout]     |
[INFO] [stdout] 414 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:415:9
[INFO] [stdout]     |
[INFO] [stdout] 415 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:420:9
[INFO] [stdout]     |
[INFO] [stdout] 420 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:421:9
[INFO] [stdout]     |
[INFO] [stdout] 421 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:425:9
[INFO] [stdout]     |
[INFO] [stdout] 425 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:426:9
[INFO] [stdout]     |
[INFO] [stdout] 426 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:427:9
[INFO] [stdout]     |
[INFO] [stdout] 427 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:429:9
[INFO] [stdout]     |
[INFO] [stdout] 429 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:464:5
[INFO] [stdout]     |
[INFO] [stdout] 464 |     A,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:465:5
[INFO] [stdout]     |
[INFO] [stdout] 465 |     C,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:466:5
[INFO] [stdout]     |
[INFO] [stdout] 466 |     D,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:467:5
[INFO] [stdout]     |
[INFO] [stdout] 467 |     E,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:468:5
[INFO] [stdout]     |
[INFO] [stdout] 468 |     F,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:469:5
[INFO] [stdout]     |
[INFO] [stdout] 469 |     G,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:470:5
[INFO] [stdout]     |
[INFO] [stdout] 470 |     H,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:471:5
[INFO] [stdout]     |
[INFO] [stdout] 471 |     I,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:472:5
[INFO] [stdout]     |
[INFO] [stdout] 472 |     K,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:473:5
[INFO] [stdout]     |
[INFO] [stdout] 473 |     L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:474:5
[INFO] [stdout]     |
[INFO] [stdout] 474 |     M,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:475:5
[INFO] [stdout]     |
[INFO] [stdout] 475 |     N,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:476:5
[INFO] [stdout]     |
[INFO] [stdout] 476 |     P,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:477:5
[INFO] [stdout]     |
[INFO] [stdout] 477 |     Q,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     R,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:479:5
[INFO] [stdout]     |
[INFO] [stdout] 479 |     S,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:480:5
[INFO] [stdout]     |
[INFO] [stdout] 480 |     T,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:481:5
[INFO] [stdout]     |
[INFO] [stdout] 481 |     V,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:482:5
[INFO] [stdout]     |
[INFO] [stdout] 482 |     W,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:483:5
[INFO] [stdout]     |
[INFO] [stdout] 483 |     Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 29.29s
[INFO] running `Command { std: "docker" "inspect" "1382a84e234d5d5f52740c65a8d2e8005b78dd0612c695c4845ba4f4d5d29402", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1382a84e234d5d5f52740c65a8d2e8005b78dd0612c695c4845ba4f4d5d29402", kill_on_drop: false }`
[INFO] [stdout] 1382a84e234d5d5f52740c65a8d2e8005b78dd0612c695c4845ba4f4d5d29402
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 511eeca966fcccfa49ae6b60cd03ce9e1031d1993ce6e6bc061b6822adc33329
[INFO] running `Command { std: "docker" "start" "-a" "511eeca966fcccfa49ae6b60cd03ce9e1031d1993ce6e6bc061b6822adc33329", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `QualityScore`
[INFO] [stderr]   --> src/rvdna.rs:40:45
[INFO] [stderr]    |
[INFO] [stderr] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stderr]    |                                             ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: ambiguous glob re-exports
[INFO] [stderr]   --> src/lib.rs:79:13
[INFO] [stderr]    |
[INFO] [stderr] 79 |     pub use crate::kmer::*;
[INFO] [stderr]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stderr] ...
[INFO] [stderr] 82 |     pub use crate::types::*;
[INFO] [stderr]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `next_ref_bases`
[INFO] [stderr]    --> src/variant.rs:169:9
[INFO] [stderr]     |
[INFO] [stderr] 169 |         next_ref_bases: &[u8],
[INFO] [stderr]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `nucleotide_to_bits` is never used
[INFO] [stderr]   --> src/kmer.rs:30:4
[INFO] [stderr]    |
[INFO] [stderr] 30 | fn nucleotide_to_bits(nuc: u8) -> Option<u8> {
[INFO] [stderr]    |    ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: method `hash_kmer` is never used
[INFO] [stderr]    --> src/kmer.rs:169:8
[INFO] [stderr]     |
[INFO] [stderr]  70 | impl KmerEncoder {
[INFO] [stderr]     | ---------------- method in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stderr]     |        ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:15:5
[INFO] [stderr]    |
[INFO] [stderr] 15 |     pub name: &'static str,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] note: the lint level is defined here
[INFO] [stderr]   --> src/lib.rs:16:9
[INFO] [stderr]    |
[INFO] [stderr] 16 | #![warn(missing_docs)]
[INFO] [stderr]    |         ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:16:5
[INFO] [stderr]    |
[INFO] [stderr] 16 |     pub unit: &'static str,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:17:5
[INFO] [stderr]    |
[INFO] [stderr] 17 |     pub normal_low: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:18:5
[INFO] [stderr]    |
[INFO] [stderr] 18 |     pub normal_high: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 |     pub critical_low: Option<f64>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:20:5
[INFO] [stderr]    |
[INFO] [stderr] 20 |     pub critical_high: Option<f64>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:21:5
[INFO] [stderr]    |
[INFO] [stderr] 21 |     pub category: &'static str,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/biomarker.rs:27:5
[INFO] [stderr]    |
[INFO] [stderr] 27 |     CriticalLow,
[INFO] [stderr]    |     ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/biomarker.rs:28:5
[INFO] [stderr]    |
[INFO] [stderr] 28 |     Low,
[INFO] [stderr]    |     ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/biomarker.rs:29:5
[INFO] [stderr]    |
[INFO] [stderr] 29 |     Normal,
[INFO] [stderr]    |     ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/biomarker.rs:30:5
[INFO] [stderr]    |
[INFO] [stderr] 30 |     High,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/biomarker.rs:31:5
[INFO] [stderr]    |
[INFO] [stderr] 31 |     CriticalHigh,
[INFO] [stderr]    |     ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:87:5
[INFO] [stderr]    |
[INFO] [stderr] 87 |     pub category: String,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:88:5
[INFO] [stderr]    |
[INFO] [stderr] 88 |     pub score: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:89:5
[INFO] [stderr]    |
[INFO] [stderr] 89 |     pub confidence: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:90:5
[INFO] [stderr]    |
[INFO] [stderr] 90 |     pub contributing_variants: Vec<String>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:96:5
[INFO] [stderr]    |
[INFO] [stderr] 96 |     pub subject_id: String,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:97:5
[INFO] [stderr]    |
[INFO] [stderr] 97 |     pub timestamp: i64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:98:5
[INFO] [stderr]    |
[INFO] [stderr] 98 |     pub category_scores: HashMap<String, CategoryScore>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker.rs:99:5
[INFO] [stderr]    |
[INFO] [stderr] 99 |     pub global_risk_score: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker.rs:100:5
[INFO] [stderr]     |
[INFO] [stderr] 100 |     pub profile_vector: Vec<f32>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker.rs:101:5
[INFO] [stderr]     |
[INFO] [stderr] 101 |     pub biomarker_values: HashMap<String, f64>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:17:5
[INFO] [stderr]    |
[INFO] [stderr] 17 |     pub base_interval_ms: u64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:18:5
[INFO] [stderr]    |
[INFO] [stderr] 18 |     pub noise_amplitude: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 |     pub drift_rate: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:20:5
[INFO] [stderr]    |
[INFO] [stderr] 20 |     pub anomaly_probability: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:21:5
[INFO] [stderr]    |
[INFO] [stderr] 21 |     pub anomaly_magnitude: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:22:5
[INFO] [stderr]    |
[INFO] [stderr] 22 |     pub num_biomarkers: usize,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:23:5
[INFO] [stderr]    |
[INFO] [stderr] 23 |     pub window_size: usize,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:43:5
[INFO] [stderr]    |
[INFO] [stderr] 43 |     pub timestamp_ms: u64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:44:5
[INFO] [stderr]    |
[INFO] [stderr] 44 |     pub biomarker_id: String,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:45:5
[INFO] [stderr]    |
[INFO] [stderr] 45 |     pub value: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:46:5
[INFO] [stderr]    |
[INFO] [stderr] 46 |     pub reference_low: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:47:5
[INFO] [stderr]    |
[INFO] [stderr] 47 |     pub reference_high: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:48:5
[INFO] [stderr]    |
[INFO] [stderr] 48 |     pub is_anomaly: bool,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/biomarker_stream.rs:49:5
[INFO] [stderr]    |
[INFO] [stderr] 49 |     pub z_score: f64,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for an associated function
[INFO] [stderr]   --> src/biomarker_stream.rs:64:5
[INFO] [stderr]    |
[INFO] [stderr] 64 |     pub fn new(capacity: usize) -> Self {
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]   --> src/biomarker_stream.rs:69:5
[INFO] [stderr]    |
[INFO] [stderr] 69 |     pub fn push(&mut self, item: T) {
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]   --> src/biomarker_stream.rs:77:5
[INFO] [stderr]    |
[INFO] [stderr] 77 |     pub fn iter(&self) -> impl Iterator<Item = &T> {
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]   --> src/biomarker_stream.rs:83:5
[INFO] [stderr]    |
[INFO] [stderr] 83 |     pub fn len(&self) -> usize { self.len }
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]   --> src/biomarker_stream.rs:84:5
[INFO] [stderr]    |
[INFO] [stderr] 84 |     pub fn is_full(&self) -> bool { self.len == self.capacity }
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]   --> src/biomarker_stream.rs:86:5
[INFO] [stderr]    |
[INFO] [stderr] 86 |     pub fn clear(&mut self) {
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:152:5
[INFO] [stderr]     |
[INFO] [stderr] 152 |     pub mean: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:153:5
[INFO] [stderr]     |
[INFO] [stderr] 153 |     pub variance: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:154:5
[INFO] [stderr]     |
[INFO] [stderr] 154 |     pub min: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:155:5
[INFO] [stderr]     |
[INFO] [stderr] 155 |     pub max: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:156:5
[INFO] [stderr]     |
[INFO] [stderr] 156 |     pub count: u64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:157:5
[INFO] [stderr]     |
[INFO] [stderr] 157 |     pub anomaly_rate: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:158:5
[INFO] [stderr]     |
[INFO] [stderr] 158 |     pub trend_slope: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:159:5
[INFO] [stderr]     |
[INFO] [stderr] 159 |     pub ema: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:160:5
[INFO] [stderr]     |
[INFO] [stderr] 160 |     pub cusum_pos: f64,          // CUSUM positive direction
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:161:5
[INFO] [stderr]     |
[INFO] [stderr] 161 |     pub cusum_neg: f64,          // CUSUM negative direction
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:162:5
[INFO] [stderr]     |
[INFO] [stderr] 162 |     pub changepoint_detected: bool,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:177:5
[INFO] [stderr]     |
[INFO] [stderr] 177 |     pub accepted: bool,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:178:5
[INFO] [stderr]     |
[INFO] [stderr] 178 |     pub z_score: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:179:5
[INFO] [stderr]     |
[INFO] [stderr] 179 |     pub is_anomaly: bool,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:180:5
[INFO] [stderr]     |
[INFO] [stderr] 180 |     pub current_trend: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:185:5
[INFO] [stderr]     |
[INFO] [stderr] 185 |     pub total_readings: u64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:186:5
[INFO] [stderr]     |
[INFO] [stderr] 186 |     pub anomaly_count: u64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:187:5
[INFO] [stderr]     |
[INFO] [stderr] 187 |     pub anomaly_rate: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:188:5
[INFO] [stderr]     |
[INFO] [stderr] 188 |     pub biomarker_stats: HashMap<String, StreamStats>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/biomarker_stream.rs:189:5
[INFO] [stderr]     |
[INFO] [stderr] 189 |     pub throughput_readings_per_sec: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for an associated function
[INFO] [stderr]    --> src/biomarker_stream.rs:214:5
[INFO] [stderr]     |
[INFO] [stderr] 214 |     pub fn new(config: StreamConfig) -> Self {
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]    --> src/biomarker_stream.rs:223:5
[INFO] [stderr]     |
[INFO] [stderr] 223 |     pub fn process_reading(&mut self, reading: &BiomarkerReading) -> ProcessingResult {
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]    --> src/biomarker_stream.rs:275:5
[INFO] [stderr]     |
[INFO] [stderr] 275 |     pub fn get_stats(&self, biomarker_id: &str) -> Option<&StreamStats> {
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a method
[INFO] [stderr]    --> src/biomarker_stream.rs:279:5
[INFO] [stderr]     |
[INFO] [stderr] 279 |     pub fn summary(&self) -> StreamSummary {
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/error.rs:38:25
[INFO] [stderr]    |
[INFO] [stderr] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]   --> src/error.rs:38:42
[INFO] [stderr]    |
[INFO] [stderr] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:196:5
[INFO] [stderr]     |
[INFO] [stderr] 196 |     pub name: String,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:197:5
[INFO] [stderr]     |
[INFO] [stderr] 197 |     pub snp_count: usize,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:198:5
[INFO] [stderr]     |
[INFO] [stderr] 198 |     pub het_count: usize,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:199:5
[INFO] [stderr]     |
[INFO] [stderr] 199 |     pub het_rate: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:200:5
[INFO] [stderr]     |
[INFO] [stderr] 200 |     pub signature: Vec<f32>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:378:5
[INFO] [stderr]     |
[INFO] [stderr] 378 |     pub gene: String,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:379:5
[INFO] [stderr]     |
[INFO] [stderr] 379 |     pub allele1: String,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:380:5
[INFO] [stderr]     |
[INFO] [stderr] 380 |     pub allele2: String,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:381:5
[INFO] [stderr]     |
[INFO] [stderr] 381 |     pub activity: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:382:5
[INFO] [stderr]     |
[INFO] [stderr] 382 |     pub phenotype: MetabolizerPhenotype,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:539:5
[INFO] [stderr]     |
[INFO] [stderr] 539 |     pub data: GenotypeData,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:540:5
[INFO] [stderr]     |
[INFO] [stderr] 540 |     pub cyp2d6: CypDiplotype,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:541:5
[INFO] [stderr]     |
[INFO] [stderr] 541 |     pub cyp2c19: CypDiplotype,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:542:5
[INFO] [stderr]     |
[INFO] [stderr] 542 |     pub cyp2d6_recs: Vec<DrugRecommendation>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:543:5
[INFO] [stderr]     |
[INFO] [stderr] 543 |     pub cyp2c19_recs: Vec<DrugRecommendation>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:544:5
[INFO] [stderr]     |
[INFO] [stderr] 544 |     pub health_variants: Vec<HealthVariantResult>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:545:5
[INFO] [stderr]     |
[INFO] [stderr] 545 |     pub apoe: ApoeResult,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:546:5
[INFO] [stderr]     |
[INFO] [stderr] 546 |     pub mthfr: MthfrResult,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:547:5
[INFO] [stderr]     |
[INFO] [stderr] 547 |     pub pain: Option<PainProfile>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:548:5
[INFO] [stderr]     |
[INFO] [stderr] 548 |     pub region_qc: Vec<RegionQc>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:549:5
[INFO] [stderr]     |
[INFO] [stderr] 549 |     pub similarities: Vec<(String, String, f32)>,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:550:5
[INFO] [stderr]     |
[INFO] [stderr] 550 |     pub homozygous: usize,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:551:5
[INFO] [stderr]     |
[INFO] [stderr] 551 |     pub heterozygous: usize,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:552:5
[INFO] [stderr]     |
[INFO] [stderr] 552 |     pub indels: usize,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:553:5
[INFO] [stderr]     |
[INFO] [stderr] 553 |     pub het_ratio: f64,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/genotyping.rs:554:5
[INFO] [stderr]     |
[INFO] [stderr] 554 |     pub elapsed_ms: u128,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for an enum
[INFO] [stderr]   --> src/kmer.rs:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | pub enum KmerError {
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/kmer.rs:17:5
[INFO] [stderr]    |
[INFO] [stderr] 17 |     InvalidKmerLength(usize),
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/kmer.rs:19:5
[INFO] [stderr]    |
[INFO] [stderr] 19 |     InvalidSequence(String),
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/kmer.rs:21:5
[INFO] [stderr]    |
[INFO] [stderr] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stderr]    |     ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]   --> src/kmer.rs:23:5
[INFO] [stderr]    |
[INFO] [stderr] 23 |     EmptySequence,
[INFO] [stderr]    |     ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/kmer.rs:299:5
[INFO] [stderr]     |
[INFO] [stderr] 299 |     pub id: String,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/kmer.rs:300:5
[INFO] [stderr]     |
[INFO] [stderr] 300 |     pub score: f32,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/kmer.rs:301:5
[INFO] [stderr]     |
[INFO] [stderr] 301 |     pub distance: f32,
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:408:9
[INFO] [stderr]     |
[INFO] [stderr] 408 |         position: GenomicPosition,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:409:9
[INFO] [stderr]     |
[INFO] [stderr] 409 |         quality: QualityScore,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:413:9
[INFO] [stderr]     |
[INFO] [stderr] 413 |         position: GenomicPosition,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:414:9
[INFO] [stderr]     |
[INFO] [stderr] 414 |         inserted_bases: DnaSequence,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:415:9
[INFO] [stderr]     |
[INFO] [stderr] 415 |         quality: QualityScore,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:419:9
[INFO] [stderr]     |
[INFO] [stderr] 419 |         position: GenomicPosition,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:420:9
[INFO] [stderr]     |
[INFO] [stderr] 420 |         deleted_length: usize,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:421:9
[INFO] [stderr]     |
[INFO] [stderr] 421 |         quality: QualityScore,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:425:9
[INFO] [stderr]     |
[INFO] [stderr] 425 |         chromosome: u8,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:426:9
[INFO] [stderr]     |
[INFO] [stderr] 426 |         start: u64,
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:427:9
[INFO] [stderr]     |
[INFO] [stderr] 427 |         end: u64,
[INFO] [stderr]     |         ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:428:9
[INFO] [stderr]     |
[INFO] [stderr] 428 |         variant_type: String,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a struct field
[INFO] [stderr]    --> src/types.rs:429:9
[INFO] [stderr]     |
[INFO] [stderr] 429 |         quality: QualityScore,
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:464:5
[INFO] [stderr]     |
[INFO] [stderr] 464 |     A,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:465:5
[INFO] [stderr]     |
[INFO] [stderr] 465 |     C,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:466:5
[INFO] [stderr]     |
[INFO] [stderr] 466 |     D,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:467:5
[INFO] [stderr]     |
[INFO] [stderr] 467 |     E,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:468:5
[INFO] [stderr]     |
[INFO] [stderr] 468 |     F,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:469:5
[INFO] [stderr]     |
[INFO] [stderr] 469 |     G,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:470:5
[INFO] [stderr]     |
[INFO] [stderr] 470 |     H,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:471:5
[INFO] [stderr]     |
[INFO] [stderr] 471 |     I,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:472:5
[INFO] [stderr]     |
[INFO] [stderr] 472 |     K,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:473:5
[INFO] [stderr]     |
[INFO] [stderr] 473 |     L,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:474:5
[INFO] [stderr]     |
[INFO] [stderr] 474 |     M,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:475:5
[INFO] [stderr]     |
[INFO] [stderr] 475 |     N,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:476:5
[INFO] [stderr]     |
[INFO] [stderr] 476 |     P,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:477:5
[INFO] [stderr]     |
[INFO] [stderr] 477 |     Q,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:478:5
[INFO] [stderr]     |
[INFO] [stderr] 478 |     R,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:479:5
[INFO] [stderr]     |
[INFO] [stderr] 479 |     S,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:480:5
[INFO] [stderr]     |
[INFO] [stderr] 480 |     T,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:481:5
[INFO] [stderr]     |
[INFO] [stderr] 481 |     V,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:482:5
[INFO] [stderr]     |
[INFO] [stderr] 482 |     W,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: missing documentation for a variant
[INFO] [stderr]    --> src/types.rs:483:5
[INFO] [stderr]     |
[INFO] [stderr] 483 |     Y,
[INFO] [stderr]     |     ^
[INFO] [stderr] 
[INFO] [stderr] warning: `rvdna` (lib) generated 140 warnings (run `cargo fix --lib -p rvdna` to apply 2 suggestions)
[INFO] [stderr] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stderr]   --> src/main.rs:21:15
[INFO] [stderr]    |
[INFO] [stderr] 21 |         self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor,
[INFO] [stderr]    |               ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `ins_vec`
[INFO] [stderr]   --> src/main.rs:93:9
[INFO] [stderr]    |
[INFO] [stderr] 93 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stderr]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `rvdna` (bin "rvdna-cli") generated 2 warnings (run `cargo fix --bin "rvdna-cli" -p rvdna` to apply 2 suggestions)
[INFO] [stderr] warning: method `hash_kmer` is never used
[INFO] [stderr]    --> src/kmer.rs:169:8
[INFO] [stderr]     |
[INFO] [stderr]  70 | impl KmerEncoder {
[INFO] [stderr]     | ---------------- method in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stderr]     |        ^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `rvdna` (bin "rvdna-cli" test) generated 2 warnings (2 duplicates)
[INFO] [stderr] warning: `rvdna` (lib test) generated 139 warnings (138 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.48s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rvdna-e4b41aead96add56)
[INFO] [stdout] 
[INFO] [stdout] running 112 tests
[INFO] [stdout] test alignment::tests::test_empty_sequence_error ... ok
[INFO] [stdout] test alignment::tests::test_smith_waterman_exact_match ... ok
[INFO] [stdout] test alignment::tests::test_smith_waterman_subsequence ... ok
[INFO] [stdout] test biomarker::tests::test_biomarker_references_count ... ok
[INFO] [stdout] test alignment::tests::test_smith_waterman_with_mismatch ... ok
[INFO] [stdout] test biomarker::tests::test_classify_critical_high ... ok
[INFO] [stdout] test biomarker::tests::test_classify_critical_low ... ok
[INFO] [stdout] test biomarker::tests::test_classify_low ... ok
[INFO] [stdout] test biomarker::tests::test_classify_normal ... ok
[INFO] [stdout] test biomarker::tests::test_interaction_brca1_tp53 ... ok
[INFO] [stdout] test biomarker::tests::test_interaction_comt_oprm1 ... ok
[INFO] [stdout] test biomarker::tests::test_risk_scores_high_cancer_risk ... ok
[INFO] [stdout] test biomarker::tests::test_vector_dimension_is_64 ... ok
[INFO] [stdout] test biomarker::tests::test_vector_is_l2_normalized ... ok
[INFO] [stdout] test biomarker::tests::test_z_score_high_bound_is_one ... ok
[INFO] [stdout] test biomarker::tests::test_z_score_midpoint_is_zero ... ok
[INFO] [stdout] test biomarker_stream::tests::detects_out_of_range_anomaly ... ok
[INFO] [stdout] test biomarker_stream::tests::detects_z_score_anomaly ... ok
[INFO] [stdout] test biomarker::tests::test_risk_scores_all_hom_ref_low_risk ... ok
[INFO] [stdout] test biomarker_stream::tests::ema_converges_to_constant ... ok
[INFO] [stdout] test biomarker_stream::tests::exact_slope_for_linear_series ... ok
[INFO] [stdout] test biomarker::tests::test_population_deterministic ... ok
[INFO] [stdout] test biomarker_stream::tests::generate_correct_count_and_ids ... ok
[INFO] [stdout] test biomarker_stream::tests::generated_reference_ranges_match_defs ... ok
[INFO] [stdout] test biomarker_stream::tests::positive_trend_for_increasing ... ok
[INFO] [stdout] test biomarker_stream::tests::processor_computes_stats ... ok
[INFO] [stdout] test biomarker_stream::tests::generated_values_non_negative ... ok
[INFO] [stdout] test biomarker_stream::tests::ring_buffer_capacity_one ... ok
[INFO] [stdout] test biomarker_stream::tests::ring_buffer_clear_resets ... ok
[INFO] [stdout] test biomarker_stream::tests::processor_summary_totals ... ok
[INFO] [stdout] test biomarker_stream::tests::ring_buffer_overflow_keeps_newest ... ok
[INFO] [stdout] test biomarker_stream::tests::ring_buffer_push_iter_len ... ok
[INFO] [stdout] test biomarker_stream::tests::zero_anomaly_rate_for_constant_stream ... ok
[INFO] [stdout] test biomarker_stream::tests::negative_trend_for_decreasing ... ok
[INFO] [stdout] test epigenomics::tests::test_age_acceleration ... ok
[INFO] [stdout] test biomarker_stream::tests::z_score_small_for_near_mean ... ok
[INFO] [stdout] test epigenomics::tests::test_cancer_signal_detector ... ok
[INFO] [stdout] test epigenomics::tests::test_horvath_clock ... ok
[INFO] [stdout] test epigenomics::tests::test_methylation_entropy ... ok
[INFO] [stdout] test epigenomics::tests::test_methylation_profile ... ok
[INFO] [stdout] test genotyping::tests::test_cyp2d6_poor ... ok
[INFO] [stdout] test genotyping::tests::test_cyp_confidence_gating_acceptance ... ok
[INFO] [stdout] test genotyping::tests::test_fmt_num ... ok
[INFO] [stdout] test genotyping::tests::test_cyp_confidence_levels ... ok
[INFO] [stdout] test genotyping::tests::test_normalize_genotype ... ok
[INFO] [stdout] test health::tests::test_apoe_e2e3 ... ok
[INFO] [stdout] test health::tests::test_apoe_e3e3 ... ok
[INFO] [stdout] test biomarker::tests::test_population_generation ... ok
[INFO] [stdout] test health::tests::test_health_variants_lookup ... ok
[INFO] [stdout] test health::tests::test_mthfr_compound ... ok
[INFO] [stdout] test genotyping::tests::test_parse_counts ... ok
[INFO] [stdout] test health::tests::test_apoe_e4e4 ... ok
[INFO] [stdout] test health::tests::test_pain_high ... ok
[INFO] [stdout] test health::tests::test_pain_low ... ok
[INFO] [stdout] test health::tests::test_mthfr_normal ... ok
[INFO] [stdout] test kmer::tests::test_jaccard_distance ... ok
[INFO] [stdout] test kmer::tests::test_kmer_encoder_creation ... ok
[INFO] [stdout] test kmer::tests::test_kmer_encoder_large_k ... ok
[INFO] [stdout] test kmer::tests::test_minhash_sketch ... ok
[INFO] [stdout] test kmer::tests::test_nucleotide_encoding ... ok
[INFO] [stdout] test kmer::tests::test_reverse_complement ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_cosine_similarity_identical ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_cosine_similarity_orthogonal ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_fingerprint ... ok
[INFO] [stdout] test kmer::tests::test_canonical_kmer ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_pairwise_similarity ... ok
[INFO] [stdout] test genotyping::tests::test_parse_detects_build ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_rank_single ... ok
[INFO] [stdout] test pharma::tests::test_cyp2c19_allele_calling ... ok
[INFO] [stdout] test pharma::tests::test_cyp2c19_drug_recommendations ... ok
[INFO] [stdout] test pharma::tests::test_cyp2c19_phenotype ... ok
[INFO] [stdout] test pharma::tests::test_drug_recommendations ... ok
[INFO] [stdout] test pharma::tests::test_phenotype_prediction ... ok
[INFO] [stdout] test pharma::tests::test_star_allele_calling ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_rank_sequences_basic ... ok
[INFO] [stdout] test pipeline::tests::test_pipeline_creation ... ok
[INFO] [stdout] test kmer::tests::test_encode_sequence ... ok
[INFO] [stdout] test kmer_pagerank::tests::test_rank_empty ... ok
[INFO] [stdout] test protein::tests::test_isoelectric_point ... ok
[INFO] [stdout] test protein::tests::test_translate_basic ... ok
[INFO] [stdout] test genotyping::tests::test_report_generation ... ok
[INFO] [stdout] test protein::tests::test_hydrophobicity ... ok
[INFO] [stdout] test real_data::tests::test_benchmark_reference_length ... ok
[INFO] [stdout] test real_data::tests::test_brca1_fragment_valid ... ok
[INFO] [stdout] test real_data::tests::test_cyp2d6_valid ... ok
[INFO] [stdout] test real_data::tests::test_hbb_translates_to_hemoglobin ... ok
[INFO] [stdout] test real_data::tests::test_hbb_sequence_valid ... ok
[INFO] [stdout] test real_data::tests::test_insulin_valid ... ok
[INFO] [stdout] test real_data::tests::test_tp53_sequence_valid ... ok
[INFO] [stdout] test rvdna::tests::test_2bit_compression_ratio ... ok
[INFO] [stdout] test genotyping::tests::test_full_pipeline ... ok
[INFO] [stdout] test rvdna::tests::test_fasta_to_rvdna_conversion ... ok
[INFO] [stdout] test rvdna::tests::test_f16_roundtrip ... ok
[INFO] [stdout] test rvdna::tests::test_2bit_encoding_roundtrip ... ok
[INFO] [stdout] test rvdna::tests::test_full_rvdna_write_read ... ok
[INFO] [stdout] test rvdna::tests::test_header_roundtrip ... ok
[INFO] [stdout] test rvdna::tests::test_kmer_vector_similarity ... ok
[INFO] [stdout] test rvdna::tests::test_quality_encoding_roundtrip ... ok
[INFO] [stdout] test rvdna::tests::test_quality_compression_ratio ... ok
[INFO] [stdout] test rvdna::tests::test_rvdna_with_kmer_vectors ... ok
[INFO] [stdout] test types::tests::test_dna_sequence ... ok
[INFO] [stdout] test rvdna::tests::test_variant_tensor_binary_search ... ok
[INFO] [stdout] test rvdna::tests::test_sparse_attention_roundtrip ... ok
[INFO] [stdout] test types::tests::test_reverse_complement ... ok
[INFO] [stdout] test variant::tests::test_snp_calling ... ok
[INFO] [stdout] test variant::tests::test_variant_caller_creation ... ok
[INFO] [stdout] test types::tests::test_nucleotide_complement ... ok
[INFO] [stdout] test protein::tests::test_molecular_weight ... ok
[INFO] [stdout] test protein::tests::test_translate_stop_codon ... ok
[INFO] [stdout] test biomarker::tests::test_mthfr_elevates_homocysteine ... ok
[INFO] [stdout] test genotyping::tests::test_normalization_acceptance ... ok
[INFO] [stdout] test pipeline::tests::test_kmer_analysis ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- pipeline::tests::test_kmer_analysis stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'pipeline::tests::test_kmer_analysis' (98) panicked at src/pipeline.rs:494:9:
[INFO] [stdout] assertion failed: result.is_ok()
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5f8a2539a362 - std::backtrace_rs::backtrace::libunwind::trace::hff358a60abf734fc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x5f8a2539a362 - std::backtrace_rs::backtrace::trace_unsynchronized::h3b121f916dd95ec6
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x5f8a2539a362 - std::sys::backtrace::_print_fmt::hde0a62ded68798e9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x5f8a2539a362 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h93773fc827e3113d
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x5f8a253adbba - core::fmt::rt::Argument::fmt::h01eff69902dad97f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x5f8a253adbba - core::fmt::write::hed7b5c73d82ecb7c
[INFO] [stdout]    6:     0x5f8a25368036 - std::io::default_write_fmt::h2f696ff5b8bbaa4b
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x5f8a25368036 - std::io::Write::write_fmt::h5e66814db8a9cfce
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x5f8a25379469 - std::sys::backtrace::BacktraceLock::print::h8b1d6fcc5a56d1a3
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x5f8a25379469 - std::panicking::default_hook::{{closure}}::h2be84df4f189ae36
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x5f8a25379301 - std::panicking::default_hook::hf0ea8939246f43a9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x5f8a24fee1fe - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h02d35e3888986252
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x5f8a24fee1fe - test::test_main_with_exit_callback::{{closure}}::h939640a27d647173
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x5f8a25379792 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hc9df09ff391af3e7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x5f8a25379792 - std::panicking::panic_with_hook::hb4bd9ac1123582a0
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x5f8a2537955a - std::panicking::panic_handler::{{closure}}::hde00dd15f5637fe2
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:691:13
[INFO] [stdout]   16:     0x5f8a253745f9 - std::sys::backtrace::__rust_end_short_backtrace::hb72197fa777c1785
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x5f8a2535c31d - __rustc[4425a7e20b4c8619]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x5f8a253b597c - core::panicking::panic_fmt::ha59b517dd231f4da
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x5f8a253b5942 - core::panicking::panic::hbff2745fd4c5afec
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panicking.rs:150:5
[INFO] [stdout]   20:     0x5f8a24f66b4f - rvdna::pipeline::tests::test_kmer_analysis::h6bdc38b74fbe1664
[INFO] [stdout]                                at /opt/rustwide/workdir/src/pipeline.rs:494:9
[INFO] [stdout]   21:     0x5f8a24f66ba7 - rvdna::pipeline::tests::test_kmer_analysis::{{closure}}::hffee1b2166a61d4b
[INFO] [stdout]                                at /opt/rustwide/workdir/src/pipeline.rs:487:28
[INFO] [stdout]   22:     0x5f8a24f60a96 - core::ops::function::FnOnce::call_once::he9b6f3a9bd25c5d1
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   23:     0x5f8a24fedfbb - core::ops::function::FnOnce::call_once::hddb3cd395c36bfbb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x5f8a24fedfbb - test::__rust_begin_short_backtrace::h0b6a7601d9750bfa
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:663:18
[INFO] [stdout]   25:     0x5f8a250019ca - test::run_test_in_process::{{closure}}::h444209903f00b347
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:74
[INFO] [stdout]   26:     0x5f8a250019ca - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hfb3ba8f46e537649
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   27:     0x5f8a250019ca - std::panicking::catch_unwind::do_call::h1672a45911fcf9dc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   28:     0x5f8a250019ca - std::panicking::catch_unwind::h0fadaee22787a6dd
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   29:     0x5f8a250019ca - std::panic::catch_unwind::hc47ad190f2c8e188
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   30:     0x5f8a250019ca - test::run_test_in_process::hcd7faaf934f29999
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:27
[INFO] [stdout]   31:     0x5f8a250019ca - test::run_test::{{closure}}::hddc4550da4871867
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:607:43
[INFO] [stdout]   32:     0x5f8a24fdbe24 - test::run_test::{{closure}}::h98ae26689f13ed94
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:637:41
[INFO] [stdout]   33:     0x5f8a24fdbe24 - std::sys::backtrace::__rust_begin_short_backtrace::h3ec4d1f21ad44588
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   34:     0x5f8a24fdf7c2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::{{closure}}::hd8bf2c73d479939f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:91:13
[INFO] [stdout]   35:     0x5f8a24fdf7c2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h3b4248f358af2491
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   36:     0x5f8a24fdf7c2 - std::panicking::catch_unwind::do_call::hda10a64f4b8daebe
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   37:     0x5f8a24fdf7c2 - std::panicking::catch_unwind::h659e5ee8336ec8c7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   38:     0x5f8a24fdf7c2 - std::panic::catch_unwind::h9d4d66a538912c18
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   39:     0x5f8a24fdf7c2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::h7557906bb51d79f1
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:89:26
[INFO] [stdout]   40:     0x5f8a24fdf7c2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9e460d1d7fc83d35
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   41:     0x5f8a2536f7df - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h61282da819d64ea9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   42:     0x5f8a2536f7df - std::sys::thread::unix::Thread::new::thread_start::h982f9ea829d1b5fb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/thread/unix.rs:127:17
[INFO] [stdout]   43:     0x758442b24aa4 - <unknown>
[INFO] [stdout]   44:     0x758442bb1a64 - clone
[INFO] [stdout]   45:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     pipeline::tests::test_kmer_analysis
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 111 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "511eeca966fcccfa49ae6b60cd03ce9e1031d1993ce6e6bc061b6822adc33329", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "511eeca966fcccfa49ae6b60cd03ce9e1031d1993ce6e6bc061b6822adc33329", kill_on_drop: false }`
[INFO] [stdout] 511eeca966fcccfa49ae6b60cd03ce9e1031d1993ce6e6bc061b6822adc33329
