[INFO] cloning repository https://github.com/stela2502/bam_tide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_tide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 22b94f7901f5f0d0c98e8e1db6bcd57752927790
[INFO] testing stela2502/bam_tide against 1.94.0 for beta-1.95-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_tide
[INFO] finished tweaking git repo https://github.com/stela2502/bam_tide
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_tide written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_tide on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_tide already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/rust-htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/hts-sys.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htscodecs.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 4 packages to latest Rust 1.94.0 compatible versions
[INFO] [stderr]     Updating bindgen v0.69.5 -> v0.71.1
[INFO] [stderr]       Adding hts-sys v2.2.0 (https://github.com/stela2502/hts-sys.git#6b607194)
[INFO] [stderr]       Adding rust-htslib v1.0.0 (https://github.com/stela2502/rust-htslib.git#37251c19)
[INFO] [stderr]     Updating rustc-hash v1.1.0 -> v2.1.1
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unit-prefix v0.5.2
[INFO] [stderr]   Downloaded stela-int-to-str v0.1.0
[INFO] [stderr]   Downloaded mapping_info v0.1.0
[INFO] [stderr]   Downloaded scdata v0.1.0
[INFO] [stderr]   Downloaded ufmt-write v0.1.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded console v0.16.2
[INFO] [stderr]   Downloaded predicates-core v1.0.10
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded termtree v0.5.1
[INFO] [stderr]   Downloaded predicates-tree v1.0.13
[INFO] [stderr]   Downloaded indicatif v0.18.4
[INFO] [stderr]   Downloaded predicates v3.1.4
[INFO] [stderr]   Downloaded byteordered v0.6.0
[INFO] [stderr]   Downloaded webpki v0.22.4
[INFO] [stderr]   Downloaded attohttpc v0.25.0
[INFO] [stderr]   Downloaded futures v0.3.32
[INFO] [stderr]   Downloaded gtf_splice_index v0.4.0
[INFO] [stderr]   Downloaded assert_cmd v2.1.2
[INFO] [stderr]   Downloaded ufmt v0.2.0
[INFO] [stderr]   Downloaded index_list v0.2.17
[INFO] [stderr]   Downloaded libdeflate-sys v0.13.0
[INFO] [stderr]   Downloaded libdeflater v0.13.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded bindgen v0.71.1
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded num-format v0.4.4
[INFO] [stderr]   Downloaded ufmt-macros v0.3.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded tokio v1.50.0
[INFO] [stderr]   Downloaded libz-sys v1.1.24
[INFO] [stderr]   Downloaded bigtools v0.5.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d0347d4b455b81f31e1c9977747609f8347b9fdbeb2dedb500fef99daf7102e7
[INFO] running `Command { std: "docker" "start" "-a" "d0347d4b455b81f31e1c9977747609f8347b9fdbeb2dedb500fef99daf7102e7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d0347d4b455b81f31e1c9977747609f8347b9fdbeb2dedb500fef99daf7102e7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d0347d4b455b81f31e1c9977747609f8347b9fdbeb2dedb500fef99daf7102e7", kill_on_drop: false }`
[INFO] [stdout] d0347d4b455b81f31e1c9977747609f8347b9fdbeb2dedb500fef99daf7102e7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 98df30feb6d12d370e0a9ab8b9bda402f8b695df7799d79fd2a930cfbf957511
[INFO] running `Command { std: "docker" "start" "-a" "98df30feb6d12d370e0a9ab8b9bda402f8b695df7799d79fd2a930cfbf957511", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.182
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling writeable v0.6.2
[INFO] [stderr]    Compiling litemap v0.8.1
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]    Compiling icu_normalizer_data v2.1.1
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling futures-core v0.3.32
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling cc v1.2.56
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libz-sys v1.1.24
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling pin-project-lite v0.2.17
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling futures-sink v0.3.32
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling futures-channel v0.3.32
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling libdeflate-sys v0.13.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling futures-task v0.3.32
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling futures-macro v0.3.32
[INFO] [stderr]    Compiling yoke v0.8.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling zerotrie v0.2.3
[INFO] [stderr]    Compiling zerovec v0.11.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling tinystr v0.8.2
[INFO] [stderr]    Compiling potential_utf v0.1.4
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling icu_locale_core v2.1.1
[INFO] [stderr]    Compiling icu_collections v2.1.1
[INFO] [stderr]    Compiling base64 v0.21.7
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]    Compiling slab v0.4.12
[INFO] [stderr]    Compiling futures-io v0.3.32
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling icu_provider v2.1.1
[INFO] [stderr]    Compiling futures-util v0.3.32
[INFO] [stderr]    Compiling icu_normalizer v2.1.1
[INFO] [stderr]    Compiling icu_properties v2.1.2
[INFO] [stderr]    Compiling rustls-pemfile v1.0.4
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling sct v0.7.1
[INFO] [stderr]    Compiling rustls-webpki v0.101.7
[INFO] [stderr]    Compiling clap_builder v4.5.60
[INFO] [stderr]    Compiling console v0.16.2
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling hts-sys v2.2.0 (https://github.com/stela2502/hts-sys.git#6b607194)
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling arrayvec v0.7.6
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling bytes v1.11.1
[INFO] [stderr]    Compiling unit-prefix v0.5.2
[INFO] [stderr]    Compiling linux-raw-sys v0.12.1
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling predicates-core v1.0.10
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling http v0.2.12
[INFO] [stderr]    Compiling indicatif v0.18.4
[INFO] [stderr]    Compiling rustls-native-certs v0.6.3
[INFO] [stderr]    Compiling num-format v0.4.4
[INFO] [stderr]    Compiling clap v4.5.60
[INFO] [stderr]    Compiling chrono v0.4.44
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling futures-executor v0.3.32
[INFO] [stderr]    Compiling webpki v0.22.4
[INFO] [stderr]    Compiling ufmt-macros v0.3.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling ufmt-write v0.1.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling assert_cmd v2.1.2
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling predicates-tree v1.0.13
[INFO] [stderr]    Compiling ufmt v0.2.0
[INFO] [stderr]    Compiling predicates v3.1.4
[INFO] [stderr]    Compiling mapping_info v0.1.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling tempfile v3.26.0
[INFO] [stderr]    Compiling attohttpc v0.25.0
[INFO] [stderr]    Compiling futures v0.3.32
[INFO] [stderr]    Compiling libdeflater v0.13.0
[INFO] [stderr]    Compiling byteordered v0.6.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling tokio v1.50.0
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling stela-int-to-str v0.1.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling index_list v0.2.17
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling ryu v1.0.23
[INFO] [stderr]    Compiling scdata v0.1.0
[INFO] [stderr]    Compiling gtf_splice_index v0.4.0
[INFO] [stderr]    Compiling bigtools v0.5.6
[INFO] [stderr]    Compiling rust-htslib v1.0.0 (https://github.com/stela2502/rust-htslib.git#37251c19)
[INFO] [stderr]    Compiling bam_tide v1.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 02s
[INFO] running `Command { std: "docker" "inspect" "98df30feb6d12d370e0a9ab8b9bda402f8b695df7799d79fd2a930cfbf957511", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "98df30feb6d12d370e0a9ab8b9bda402f8b695df7799d79fd2a930cfbf957511", kill_on_drop: false }`
[INFO] [stdout] 98df30feb6d12d370e0a9ab8b9bda402f8b695df7799d79fd2a930cfbf957511
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 12f74dd0c82cdca13c6c63395d1fcb8ed35f0f164bb48bd4f2644b9c96da9765
[INFO] running `Command { std: "docker" "start" "-a" "12f74dd0c82cdca13c6c63395d1fcb8ed35f0f164bb48bd4f2644b9c96da9765", kill_on_drop: false }`
[INFO] [stderr]    Compiling bam_tide v1.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.18s
[INFO] running `Command { std: "docker" "inspect" "12f74dd0c82cdca13c6c63395d1fcb8ed35f0f164bb48bd4f2644b9c96da9765", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "12f74dd0c82cdca13c6c63395d1fcb8ed35f0f164bb48bd4f2644b9c96da9765", kill_on_drop: false }`
[INFO] [stdout] 12f74dd0c82cdca13c6c63395d1fcb8ed35f0f164bb48bd4f2644b9c96da9765
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] ca20ea65ff487a3a37fc457af8c812663c95fa9b9f14248a4f13f1d3001fdfb9
[INFO] running `Command { std: "docker" "start" "-a" "ca20ea65ff487a3a37fc457af8c812663c95fa9b9f14248a4f13f1d3001fdfb9", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bam_tide-8a07c3406abb075e)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] test bed_data::bed_data::binning_tests::add_ref_blocks_counts_read_once_per_bin_even_with_two_blocks ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_clips_to_chr_end ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_accumulates_across_reads ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_crosses_two_bins_partial ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_multi_bins ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_ignores_empty_and_outside ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_single_bin_full_overlap ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_unknown_chr_is_error_or_noop ... ok
[INFO] [stdout] test core::ref_block::tests::test_deletion_splits_blocks ... ok
[INFO] [stdout] test core::ref_block::tests::test_simple_match ... ok
[INFO] [stdout] test core::ref_block::tests::test_split_blocks_across_splice ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_exact_bin_boundary_no_spill ... ok
[INFO] [stdout] test bed_data::bed_data::binning_tests::test_add_ref_blocks_multiple_blocks_one_read_counts_once ... ok
[INFO] [stderr]      Running unittests src/bin/bam-coverage.rs (/opt/rustwide/target/debug/deps/bam_coverage-8bb601bb3a4c1e88)
[INFO] [stdout] test core::ref_block::tests::test_splice ... ok
[INFO] [stderr]      Running unittests src/bin/bam-quant.rs (/opt/rustwide/target/debug/deps/bam_quant-fe2634e74e59b67e)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bam-subset-tag.rs (/opt/rustwide/target/debug/deps/bam_subset_tag-bbd38ead31b1de6c)
[INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stderr]      Running unittests src/bin/bw-compare.rs (/opt/rustwide/target/debug/deps/bw_compare-f89c4266c1d275a3)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/compare_against_golden_bw.rs (/opt/rustwide/target/debug/deps/compare_against_golden_bw-18a599daa95b6766)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test-bam-quant.rs (/opt/rustwide/target/debug/deps/test_bam_quant-6fa6dd902ef2ce40)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test-bam-subset-tag.rs (/opt/rustwide/target/debug/deps/test_bam_subset_tag-2f3761a511f95dc9)
[INFO] [stdout] running 1 test
[INFO] [stdout] test rust_bigwig_matches_golden_deeptools_bwcompare ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test bam_quant_full_pipeline_cached_with_auto_index ... ignored, Downloads data + requires wget/gzip/awk/samtools. Run manually.
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_multi_subset_bam ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_multi_subset_bam stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'test_multi_subset_bam' (38) panicked at tests/test-bam-subset-tag.rs:134:9:
[INFO] [stdout] Command failed!
[INFO] [stdout] /opt/rustwide/target/debug/bam-subset-tag "-b" "testData/bam_subset_test.bam" "-v" "testData/barcodes.txt" "testData/barcodes2.txt" "-o" "testData/output/two_clusters_"
[INFO] [stdout] 
[INFO] [stdout] stdout:
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] Error: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: anyhow::error::<impl core::convert::From<E> for anyhow::Error>::from
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.102/src/backtrace.rs:10:14
[INFO] [stdout]    1: <core::result::Result<T,F> as core::ops::try_trait::FromResidual<core::result::Result<core::convert::Infallible,E>>>::from_residual
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/result.rs:2189:27
[INFO] [stdout]    2: bam_subset_tag::main
[INFO] [stdout]              at ./src/bin/bam-subset-tag.rs:81:9
[INFO] [stdout]    3: core::ops::function::FnOnce::call_once
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]    4: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]    5: std::rt::lang_start::{{closure}}
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/rt.rs:206:18
[INFO] [stdout]    6: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:287:21
[INFO] [stdout]    7: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]    8: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]    9: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   10: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/rt.rs:175:24
[INFO] [stdout]   11: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   12: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   13: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   14: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/rt.rs:171:5
[INFO] [stdout]   15: std::rt::lang_start
[INFO] [stdout]              at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/rt.rs:205:5
[INFO] [stdout]   16: main
[INFO] [stdout]   17: <unknown>
[INFO] [stdout]   18: __libc_start_main
[INFO] [stdout]   19: _start
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5ccd89c39d12 - std::backtrace_rs::backtrace::libunwind::trace::hff358a60abf734fc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x5ccd89c39d12 - std::backtrace_rs::backtrace::trace_unsynchronized::h3b121f916dd95ec6
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x5ccd89c39d12 - std::sys::backtrace::_print_fmt::hde0a62ded68798e9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x5ccd89c39d12 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h93773fc827e3113d
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x5ccd89c49fba - core::fmt::rt::Argument::fmt::h01eff69902dad97f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x5ccd89c49fba - core::fmt::write::hed7b5c73d82ecb7c
[INFO] [stdout]    6:     0x5ccd89c07c26 - std::io::default_write_fmt::h2f696ff5b8bbaa4b
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x5ccd89c07c26 - std::io::Write::write_fmt::h5e66814db8a9cfce
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x5ccd89c18ee9 - std::sys::backtrace::BacktraceLock::print::h8b1d6fcc5a56d1a3
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x5ccd89c18ee9 - std::panicking::default_hook::{{closure}}::h2be84df4f189ae36
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x5ccd89c18d81 - std::panicking::default_hook::hf0ea8939246f43a9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x5ccd89bb74fe - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h02d35e3888986252
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x5ccd89bb74fe - test::test_main_with_exit_callback::{{closure}}::h939640a27d647173
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x5ccd89c19162 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hc9df09ff391af3e7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x5ccd89c19162 - std::panicking::panic_with_hook::hb4bd9ac1123582a0
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x5ccd89c18fa8 - std::panicking::panic_handler::{{closure}}::hde00dd15f5637fe2
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x5ccd89c142d9 - std::sys::backtrace::__rust_end_short_backtrace::hb72197fa777c1785
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x5ccd89bfca5d - __rustc[4425a7e20b4c8619]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x5ccd89c516ac - core::panicking::panic_fmt::ha59b517dd231f4da
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x5ccd89b9093e - test_bam_subset_tag::test_multi_subset_bam::hfa98b20446737f10
[INFO] [stdout]                                at /opt/rustwide/workdir/tests/test-bam-subset-tag.rs:134:9
[INFO] [stdout]   20:     0x5ccd89b90e47 - test_bam_subset_tag::test_multi_subset_bam::{{closure}}::he4a87ac641ab0dd2
[INFO] [stdout]                                at /opt/rustwide/workdir/tests/test-bam-subset-tag.rs:99:27
[INFO] [stdout]   21:     0x5ccd89b95916 - core::ops::function::FnOnce::call_once::ha62d4a2275974979
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   22:     0x5ccd89bb72bb - core::ops::function::FnOnce::call_once::hddb3cd395c36bfbb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   23:     0x5ccd89bb72bb - test::__rust_begin_short_backtrace::h0b6a7601d9750bfa
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:663:18
[INFO] [stdout]   24:     0x5ccd89bcacca - test::run_test_in_process::{{closure}}::h444209903f00b347
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:74
[INFO] [stdout]   25:     0x5ccd89bcacca - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hfb3ba8f46e537649
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   26:     0x5ccd89bcacca - std::panicking::catch_unwind::do_call::h1672a45911fcf9dc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   27:     0x5ccd89bcacca - std::panicking::catch_unwind::h0fadaee22787a6dd
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   28:     0x5ccd89bcacca - std::panic::catch_unwind::hc47ad190f2c8e188
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   29:     0x5ccd89bcacca - test::run_test_in_process::hcd7faaf934f29999
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:27
[INFO] [stdout]   30:     0x5ccd89bcacca - test::run_test::{{closure}}::hddc4550da4871867
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:607:43
[INFO] [stdout]   31:     0x5ccd89ba5124 - test::run_test::{{closure}}::h98ae26689f13ed94
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:637:41
[INFO] [stdout]   32:     0x5ccd89ba5124 - std::sys::backtrace::__rust_begin_short_backtrace::h3ec4d1f21ad44588
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   33:     0x5ccd89ba8ac2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::{{closure}}::hd8bf2c73d479939f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:91:13
[INFO] [stdout]   34:     0x5ccd89ba8ac2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h3b4248f358af2491
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   35:     0x5ccd89ba8ac2 - std::panicking::catch_unwind::do_call::hda10a64f4b8daebe
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   36:     0x5ccd89ba8ac2 - std::panicking::catch_unwind::h659e5ee8336ec8c7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   37:     0x5ccd89ba8ac2 - std::panic::catch_unwind::h9d4d66a538912c18
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   38:     0x5ccd89ba8ac2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::h7557906bb51d79f1
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:89:26
[INFO] [stdout]   39:     0x5ccd89ba8ac2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9e460d1d7fc83d35
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   40:     0x5ccd89c0f39f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h61282da819d64ea9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   41:     0x5ccd89c0f39f - std::sys::thread::unix::Thread::new::thread_start::h982f9ea829d1b5fb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/thread/unix.rs:127:17
[INFO] [stdout]   42:     0x7dbadccc9aa4 - <unknown>
[INFO] [stdout]   43:     0x7dbadcd56a64 - clone
[INFO] [stdout]   44:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_multi_subset_bam
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.29s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test test-bam-subset-tag`
[INFO] running `Command { std: "docker" "inspect" "ca20ea65ff487a3a37fc457af8c812663c95fa9b9f14248a4f13f1d3001fdfb9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ca20ea65ff487a3a37fc457af8c812663c95fa9b9f14248a4f13f1d3001fdfb9", kill_on_drop: false }`
[INFO] [stdout] ca20ea65ff487a3a37fc457af8c812663c95fa9b9f14248a4f13f1d3001fdfb9
