[INFO] cloning repository https://github.com/noahcape/sequ_edit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/noahcape/sequ_edit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fsequ_edit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fsequ_edit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 311529083e278c1a070589c6a21a6f2eec2090bc
[INFO] testing noahcape/sequ_edit against beta-2026-03-05 for beta-1.95-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fsequ_edit" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/noahcape/sequ_edit
[INFO] finished tweaking git repo https://github.com/noahcape/sequ_edit
[INFO] tweaked toml for git repo https://github.com/noahcape/sequ_edit written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/noahcape/sequ_edit on toolchain beta-2026-03-05
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-03-05" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/noahcape/sequ_edit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-03-05" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-03-05" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 560efdf147611b0b16ba9811cfedbe8c1f9093c6b15556f8c2ba68054b796d86
[INFO] running `Command { std: "docker" "start" "-a" "560efdf147611b0b16ba9811cfedbe8c1f9093c6b15556f8c2ba68054b796d86", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "560efdf147611b0b16ba9811cfedbe8c1f9093c6b15556f8c2ba68054b796d86", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "560efdf147611b0b16ba9811cfedbe8c1f9093c6b15556f8c2ba68054b796d86", kill_on_drop: false }`
[INFO] [stdout] 560efdf147611b0b16ba9811cfedbe8c1f9093c6b15556f8c2ba68054b796d86
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-03-05" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8dd804a2c769abd137c9c55f1002e2a0c48586a0b160956da0d653350462fcf4
[INFO] running `Command { std: "docker" "start" "-a" "8dd804a2c769abd137c9c55f1002e2a0c48586a0b160956da0d653350462fcf4", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling zerocopy v0.8.38
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling getrandom v0.4.1
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling semver v1.0.27
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rand_core v0.10.0
[INFO] [stderr]    Compiling zmij v1.0.19
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling yeslogic-fontconfig-sys v6.0.0
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling iana-time-zone v0.1.65
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling itoa v1.0.17
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling fdeflate v0.3.7
[INFO] [stderr]    Compiling pathfinder_simd v0.5.5
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling option-ext v0.2.0
[INFO] [stderr]    Compiling dlib v0.5.2
[INFO] [stderr]    Compiling font-kit v0.14.3
[INFO] [stderr]    Compiling weezl v0.1.12
[INFO] [stderr]    Compiling jpeg-decoder v0.3.2
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling pathfinder_geometry v0.5.1
[INFO] [stderr]    Compiling gif v0.12.0
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling float-ord v0.3.2
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling dirs-sys v0.5.0
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling uuid v1.21.0
[INFO] [stderr]    Compiling png v0.17.16
[INFO] [stderr]    Compiling dirs v6.0.0
[INFO] [stderr]    Compiling rand v0.10.0
[INFO] [stderr]    Compiling memmap2 v0.9.10
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling freetype-sys v0.20.1
[INFO] [stderr]    Compiling scirs2-core v0.1.5
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling ryu v1.0.23
[INFO] [stderr]    Compiling ttf-parser v0.20.0
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling env_filter v1.0.0
[INFO] [stderr]    Compiling env_logger v0.11.9
[INFO] [stderr]    Compiling quickcheck v1.1.0
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling zerocopy-derive v0.8.38
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling oxicode_derive v0.1.0
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling safe_arch v1.0.0
[INFO] [stderr]    Compiling image v0.24.9
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling wide v1.1.1
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling chrono v0.4.43
[INFO] [stderr]    Compiling oxicode v0.1.1
[INFO] [stderr]    Compiling plotters-bitmap v0.3.7
[INFO] [stderr]    Compiling oxiblas-core v0.1.2
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling ndarray v0.17.2
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling lambert_w v1.2.34
[INFO] [stderr]    Compiling special v0.11.4
[INFO] [stderr]    Compiling oxiblas-matrix v0.1.2
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling oxiblas-blas v0.1.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling oxiblas-lapack v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling rand_distr v0.5.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling ndarray-rand v0.16.0
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling oxiblas-ndarray v0.1.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling statrs v0.16.1
[INFO] [stderr]    Compiling scirs2-linalg v0.1.5
[INFO] [stderr]    Compiling scirs2-stats v0.1.5
[INFO] [stderr]    Compiling sequ_edit v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Rng`
[INFO] [stdout]  --> src/tree.rs:2:24
[INFO] [stdout]   |
[INFO] [stdout] 2 | use rand::{thread_rng, Rng};
[INFO] [stdout]   |                        ^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `Ancestor` is never used
[INFO] [stdout]  --> src/ancestor.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub trait Ancestor
[INFO] [stdout]   |           ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `pairwise_likelihood` is never used
[INFO] [stdout]  --> src/likelihood.rs:7:4
[INFO] [stdout]   |
[INFO] [stdout] 7 | fn pairwise_likelihood(
[INFO] [stdout]   |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `kernel_likelihood` is never used
[INFO] [stdout]   --> src/likelihood.rs:34:4
[INFO] [stdout]    |
[INFO] [stdout] 34 | fn kernel_likelihood(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `edge_likelihood` is never used
[INFO] [stdout]   --> src/likelihood.rs:51:4
[INFO] [stdout]    |
[INFO] [stdout] 51 | fn edge_likelihood(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `prob_edits_given_length` is never used
[INFO] [stdout]   --> src/likelihood.rs:65:4
[INFO] [stdout]    |
[INFO] [stdout] 65 | fn prob_edits_given_length(edits: &[usize], params: &ModelParams) -> f64 {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `probability_num_edits` is never used
[INFO] [stdout]   --> src/likelihood.rs:69:4
[INFO] [stdout]    |
[INFO] [stdout] 69 | fn probability_num_edits(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `probability_num_transfers` is never used
[INFO] [stdout]   --> src/likelihood.rs:88:4
[INFO] [stdout]    |
[INFO] [stdout] 88 | fn probability_num_transfers(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `allowable_given_children`, `allowable_cell_state`, `allowable_parents`, `lcp`, `lcp_divide_and_conquer`, and `allowable_parents_from_set` are never used
[INFO] [stdout]    --> src/likelihood.rs:102:8
[INFO] [stdout]     |
[INFO] [stdout]  99 | impl CellState {
[INFO] [stdout]     | -------------- associated items in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 102 |     fn allowable_given_children(&self, left: &Self, right: &Self) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 115 |     fn allowable_cell_state(&self) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 134 |     fn allowable_parents(&self) -> Vec<Self> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 158 |     fn lcp(&self, other: &Self) -> Self {
[INFO] [stdout]     |        ^^^
[INFO] [stdout] ...
[INFO] [stdout] 175 |     fn lcp_divide_and_conquer(leaves: Vec<&Self>) -> Self {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 193 |     fn allowable_parents_from_set(leaves: &[&Self]) -> Vec<Self> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `CYK` is never used
[INFO] [stdout]  --> src/reconstruction.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub trait CYK {
[INFO] [stdout]   |           ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `LENGTH` is never used
[INFO] [stdout]  --> src/star_homoplasy.rs:3:7
[INFO] [stdout]   |
[INFO] [stdout] 3 | const LENGTH: usize = 3;
[INFO] [stdout]   |       ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SHState` is never constructed
[INFO] [stdout]  --> src/star_homoplasy.rs:6:12
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct SHState {
[INFO] [stdout]   |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `parsimony_cost` is never used
[INFO] [stdout]   --> src/star_homoplasy.rs:11:12
[INFO] [stdout]    |
[INFO] [stdout] 10 | impl SHState {
[INFO] [stdout]    | ------------ method in this implementation
[INFO] [stdout] 11 |     pub fn parsimony_cost(&self, other: &Self) -> i32 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new_leaf` and `join_with_parent` are never used
[INFO] [stdout]   --> src/tree.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 54 | impl<N: Clone> Tree<N> {
[INFO] [stdout]    | ---------------------- associated functions in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 61 |     fn new_leaf(node: N) -> Self {
[INFO] [stdout]    |        ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 69 |     fn join_with_parent(parent: N, l: Self, ld: f64, r: Self, rd: f64) -> Self {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `plotters::prelude::*`
[INFO] [stdout]  --> src/main.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use plotters::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `SeedableRng` and `rngs::StdRng`
[INFO] [stdout]  --> src/main.rs:2:12
[INFO] [stdout]   |
[INFO] [stdout] 2 | use rand::{rngs::StdRng, thread_rng, SeedableRng};
[INFO] [stdout]   |            ^^^^^^^^^^^^              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `CellState`, `Sampling`, `bulk_sample`, `parallel_sampling`, `percentage_resolved_triplets`, and `strand_sample`
[INFO] [stdout]  --> src/main.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 |     bulk_sample, parallel_sampling, percentage_resolved_triplets, print_distances, sample_leaves,
[INFO] [stdout]   |     ^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 5 |     simulate_editing, strand_sample, CellState, ModelParams, Phylogeny, Sampling,
[INFO] [stdout]   |                       ^^^^^^^^^^^^^  ^^^^^^^^^                          ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ContinuousCDF` and `StudentsT`
[INFO] [stdout]  --> src/main.rs:7:28
[INFO] [stdout]   |
[INFO] [stdout] 7 | use statrs::distribution::{ContinuousCDF, StudentsT};
[INFO] [stdout]   |                            ^^^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `collections::BTreeMap`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 |     collections::BTreeMap,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 27s
[INFO] running `Command { std: "docker" "inspect" "8dd804a2c769abd137c9c55f1002e2a0c48586a0b160956da0d653350462fcf4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8dd804a2c769abd137c9c55f1002e2a0c48586a0b160956da0d653350462fcf4", kill_on_drop: false }`
[INFO] [stdout] 8dd804a2c769abd137c9c55f1002e2a0c48586a0b160956da0d653350462fcf4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-03-05" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0d9a376c03b2c13e6236544244313a1a276c234b563590a49c5e7ba9738ae229
[INFO] running `Command { std: "docker" "start" "-a" "0d9a376c03b2c13e6236544244313a1a276c234b563590a49c5e7ba9738ae229", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `Rng`
[INFO] [stdout]  --> src/tree.rs:2:24
[INFO] [stdout]   |
[INFO] [stdout] 2 | use rand::{thread_rng, Rng};
[INFO] [stdout]   |                        ^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `Ancestor` is never used
[INFO] [stdout]  --> src/ancestor.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub trait Ancestor
[INFO] [stdout]   |           ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `pairwise_likelihood` is never used
[INFO] [stdout]  --> src/likelihood.rs:7:4
[INFO] [stdout]   |
[INFO] [stdout] 7 | fn pairwise_likelihood(
[INFO] [stdout]   |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `kernel_likelihood` is never used
[INFO] [stdout]   --> src/likelihood.rs:34:4
[INFO] [stdout]    |
[INFO] [stdout] 34 | fn kernel_likelihood(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `edge_likelihood` is never used
[INFO] [stdout]   --> src/likelihood.rs:51:4
[INFO] [stdout]    |
[INFO] [stdout] 51 | fn edge_likelihood(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `prob_edits_given_length` is never used
[INFO] [stdout]   --> src/likelihood.rs:65:4
[INFO] [stdout]    |
[INFO] [stdout] 65 | fn prob_edits_given_length(edits: &[usize], params: &ModelParams) -> f64 {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `probability_num_edits` is never used
[INFO] [stdout]   --> src/likelihood.rs:69:4
[INFO] [stdout]    |
[INFO] [stdout] 69 | fn probability_num_edits(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `probability_num_transfers` is never used
[INFO] [stdout]   --> src/likelihood.rs:88:4
[INFO] [stdout]    |
[INFO] [stdout] 88 | fn probability_num_transfers(
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `allowable_given_children`, `allowable_cell_state`, `allowable_parents`, `lcp`, `lcp_divide_and_conquer`, and `allowable_parents_from_set` are never used
[INFO] [stdout]    --> src/likelihood.rs:102:8
[INFO] [stdout]     |
[INFO] [stdout]  99 | impl CellState {
[INFO] [stdout]     | -------------- associated items in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 102 |     fn allowable_given_children(&self, left: &Self, right: &Self) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 115 |     fn allowable_cell_state(&self) -> bool {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 134 |     fn allowable_parents(&self) -> Vec<Self> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 158 |     fn lcp(&self, other: &Self) -> Self {
[INFO] [stdout]     |        ^^^
[INFO] [stdout] ...
[INFO] [stdout] 175 |     fn lcp_divide_and_conquer(leaves: Vec<&Self>) -> Self {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 193 |     fn allowable_parents_from_set(leaves: &[&Self]) -> Vec<Self> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling sequ_edit v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait `CYK` is never used
[INFO] [stdout]  --> src/reconstruction.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub trait CYK {
[INFO] [stdout]   |           ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `LENGTH` is never used
[INFO] [stdout]  --> src/star_homoplasy.rs:3:7
[INFO] [stdout]   |
[INFO] [stdout] 3 | const LENGTH: usize = 3;
[INFO] [stdout]   |       ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SHState` is never constructed
[INFO] [stdout]  --> src/star_homoplasy.rs:6:12
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct SHState {
[INFO] [stdout]   |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `parsimony_cost` is never used
[INFO] [stdout]   --> src/star_homoplasy.rs:11:12
[INFO] [stdout]    |
[INFO] [stdout] 10 | impl SHState {
[INFO] [stdout]    | ------------ method in this implementation
[INFO] [stdout] 11 |     pub fn parsimony_cost(&self, other: &Self) -> i32 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new_leaf` and `join_with_parent` are never used
[INFO] [stdout]   --> src/tree.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 54 | impl<N: Clone> Tree<N> {
[INFO] [stdout]    | ---------------------- associated functions in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 61 |     fn new_leaf(node: N) -> Self {
[INFO] [stdout]    |        ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 69 |     fn join_with_parent(parent: N, l: Self, ld: f64, r: Self, rd: f64) -> Self {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `plotters::prelude::*`
[INFO] [stdout]  --> src/main.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use plotters::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `SeedableRng` and `rngs::StdRng`
[INFO] [stdout]  --> src/main.rs:2:12
[INFO] [stdout]   |
[INFO] [stdout] 2 | use rand::{rngs::StdRng, thread_rng, SeedableRng};
[INFO] [stdout]   |            ^^^^^^^^^^^^              ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `CellState`, `Sampling`, `bulk_sample`, `parallel_sampling`, `percentage_resolved_triplets`, and `strand_sample`
[INFO] [stdout]  --> src/main.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 |     bulk_sample, parallel_sampling, percentage_resolved_triplets, print_distances, sample_leaves,
[INFO] [stdout]   |     ^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 5 |     simulate_editing, strand_sample, CellState, ModelParams, Phylogeny, Sampling,
[INFO] [stdout]   |                       ^^^^^^^^^^^^^  ^^^^^^^^^                          ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ContinuousCDF` and `StudentsT`
[INFO] [stdout]  --> src/main.rs:7:28
[INFO] [stdout]   |
[INFO] [stdout] 7 | use statrs::distribution::{ContinuousCDF, StudentsT};
[INFO] [stdout]   |                            ^^^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `collections::BTreeMap`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 |     collections::BTreeMap,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Rng`
[INFO] [stdout]  --> src/tree.rs:2:24
[INFO] [stdout]   |
[INFO] [stdout] 2 | use rand::{thread_rng, Rng};
[INFO] [stdout]   |                        ^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reconstruction`
[INFO] [stdout]    --> src/star_homoplasy.rs:103:9
[INFO] [stdout]     |
[INFO] [stdout] 103 |     let reconstruction = SHState::cyk(&leaves, SHState::parsimony_cost);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reconstruction`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reconstruction`
[INFO] [stdout]    --> src/star_homoplasy.rs:122:9
[INFO] [stdout]     |
[INFO] [stdout] 122 |     let reconstruction = SHState::cyk(&leaves, SHState::parsimony_cost);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reconstruction`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `lcp_divide_and_conquer` is never used
[INFO] [stdout]    --> src/likelihood.rs:175:8
[INFO] [stdout]     |
[INFO] [stdout]  99 | impl CellState {
[INFO] [stdout]     | -------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 175 |     fn lcp_divide_and_conquer(leaves: Vec<&Self>) -> Self {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.02s
[INFO] running `Command { std: "docker" "inspect" "0d9a376c03b2c13e6236544244313a1a276c234b563590a49c5e7ba9738ae229", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0d9a376c03b2c13e6236544244313a1a276c234b563590a49c5e7ba9738ae229", kill_on_drop: false }`
[INFO] [stdout] 0d9a376c03b2c13e6236544244313a1a276c234b563590a49c5e7ba9738ae229
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-03-05" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bc23b21a8b9a15a96b36de6aecd82ed6f76a4f97d7e7b791899e8b6076d7d86f
[INFO] running `Command { std: "docker" "start" "-a" "bc23b21a8b9a15a96b36de6aecd82ed6f76a4f97d7e7b791899e8b6076d7d86f", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `Rng`
[INFO] [stderr]  --> src/tree.rs:2:24
[INFO] [stderr]   |
[INFO] [stderr] 2 | use rand::{thread_rng, Rng};
[INFO] [stderr]   |                        ^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait `Ancestor` is never used
[INFO] [stderr]  --> src/ancestor.rs:1:11
[INFO] [stderr]   |
[INFO] [stderr] 1 | pub trait Ancestor
[INFO] [stderr]   |           ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `pairwise_likelihood` is never used
[INFO] [stderr]  --> src/likelihood.rs:7:4
[INFO] [stderr]   |
[INFO] [stderr] 7 | fn pairwise_likelihood(
[INFO] [stderr]   |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `kernel_likelihood` is never used
[INFO] [stderr]   --> src/likelihood.rs:34:4
[INFO] [stderr]    |
[INFO] [stderr] 34 | fn kernel_likelihood(
[INFO] [stderr]    |    ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `edge_likelihood` is never used
[INFO] [stderr]   --> src/likelihood.rs:51:4
[INFO] [stderr]    |
[INFO] [stderr] 51 | fn edge_likelihood(
[INFO] [stderr]    |    ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `prob_edits_given_length` is never used
[INFO] [stderr]   --> src/likelihood.rs:65:4
[INFO] [stderr]    |
[INFO] [stderr] 65 | fn prob_edits_given_length(edits: &[usize], params: &ModelParams) -> f64 {
[INFO] [stderr]    |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `probability_num_edits` is never used
[INFO] [stderr]   --> src/likelihood.rs:69:4
[INFO] [stderr]    |
[INFO] [stderr] 69 | fn probability_num_edits(
[INFO] [stderr]    |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `probability_num_transfers` is never used
[INFO] [stderr]   --> src/likelihood.rs:88:4
[INFO] [stderr]    |
[INFO] [stderr] 88 | fn probability_num_transfers(
[INFO] [stderr]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: associated items `allowable_given_children`, `allowable_cell_state`, `allowable_parents`, `lcp`, `lcp_divide_and_conquer`, and `allowable_parents_from_set` are never used
[INFO] [stderr]    --> src/likelihood.rs:102:8
[INFO] [stderr]     |
[INFO] [stderr]  99 | impl CellState {
[INFO] [stderr]     | -------------- associated items in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 102 |     fn allowable_given_children(&self, left: &Self, right: &Self) -> bool {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 115 |     fn allowable_cell_state(&self) -> bool {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 134 |     fn allowable_parents(&self) -> Vec<Self> {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 158 |     fn lcp(&self, other: &Self) -> Self {
[INFO] [stderr]     |        ^^^
[INFO] [stderr] ...
[INFO] [stderr] 175 |     fn lcp_divide_and_conquer(leaves: Vec<&Self>) -> Self {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 193 |     fn allowable_parents_from_set(leaves: &[&Self]) -> Vec<Self> {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: trait `CYK` is never used
[INFO] [stderr]  --> src/reconstruction.rs:1:11
[INFO] [stderr]   |
[INFO] [stderr] 1 | pub trait CYK {
[INFO] [stderr]   |           ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: constant `LENGTH` is never used
[INFO] [stderr]  --> src/star_homoplasy.rs:3:7
[INFO] [stderr]   |
[INFO] [stderr] 3 | const LENGTH: usize = 3;
[INFO] [stderr]   |       ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: struct `SHState` is never constructed
[INFO] [stderr]  --> src/star_homoplasy.rs:6:12
[INFO] [stderr]   |
[INFO] [stderr] 6 | pub struct SHState {
[INFO] [stderr]   |            ^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `parsimony_cost` is never used
[INFO] [stderr]   --> src/star_homoplasy.rs:11:12
[INFO] [stderr]    |
[INFO] [stderr] 10 | impl SHState {
[INFO] [stderr]    | ------------ method in this implementation
[INFO] [stderr] 11 |     pub fn parsimony_cost(&self, other: &Self) -> i32 {
[INFO] [stderr]    |            ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: associated functions `new_leaf` and `join_with_parent` are never used
[INFO] [stderr]   --> src/tree.rs:61:8
[INFO] [stderr]    |
[INFO] [stderr] 54 | impl<N: Clone> Tree<N> {
[INFO] [stderr]    | ---------------------- associated functions in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 61 |     fn new_leaf(node: N) -> Self {
[INFO] [stderr]    |        ^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 69 |     fn join_with_parent(parent: N, l: Self, ld: f64, r: Self, rd: f64) -> Self {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `sequ_edit` (lib) generated 14 warnings
[INFO] [stderr] warning: unused import: `plotters::prelude::*`
[INFO] [stderr]  --> src/main.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use plotters::prelude::*;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `SeedableRng` and `rngs::StdRng`
[INFO] [stderr]  --> src/main.rs:2:12
[INFO] [stderr]   |
[INFO] [stderr] 2 | use rand::{rngs::StdRng, thread_rng, SeedableRng};
[INFO] [stderr]   |            ^^^^^^^^^^^^              ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `CellState`, `Sampling`, `bulk_sample`, `parallel_sampling`, `percentage_resolved_triplets`, and `strand_sample`
[INFO] [stderr]  --> src/main.rs:4:5
[INFO] [stderr]   |
[INFO] [stderr] 4 |     bulk_sample, parallel_sampling, percentage_resolved_triplets, print_distances, sample_leaves,
[INFO] [stderr]   |     ^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 5 |     simulate_editing, strand_sample, CellState, ModelParams, Phylogeny, Sampling,
[INFO] [stderr]   |                       ^^^^^^^^^^^^^  ^^^^^^^^^                          ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `ContinuousCDF` and `StudentsT`
[INFO] [stderr]  --> src/main.rs:7:28
[INFO] [stderr]   |
[INFO] [stderr] 7 | use statrs::distribution::{ContinuousCDF, StudentsT};
[INFO] [stderr]   |                            ^^^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `collections::BTreeMap`
[INFO] [stderr]  --> src/main.rs:9:5
[INFO] [stderr]   |
[INFO] [stderr] 9 |     collections::BTreeMap,
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `reconstruction`
[INFO] [stderr]    --> src/star_homoplasy.rs:103:9
[INFO] [stderr]     |
[INFO] [stderr] 103 |     let reconstruction = SHState::cyk(&leaves, SHState::parsimony_cost);
[INFO] [stderr]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reconstruction`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `reconstruction`
[INFO] [stderr]    --> src/star_homoplasy.rs:122:9
[INFO] [stderr]     |
[INFO] [stderr] 122 |     let reconstruction = SHState::cyk(&leaves, SHState::parsimony_cost);
[INFO] [stderr]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reconstruction`
[INFO] [stderr] 
[INFO] [stderr] warning: associated function `lcp_divide_and_conquer` is never used
[INFO] [stderr]    --> src/likelihood.rs:175:8
[INFO] [stderr]     |
[INFO] [stderr]  99 | impl CellState {
[INFO] [stderr]     | -------------- associated function in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 175 |     fn lcp_divide_and_conquer(leaves: Vec<&Self>) -> Self {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `sequ_edit` (bin "sequ_edit" test) generated 5 warnings (run `cargo fix --bin "sequ_edit" -p sequ_edit --tests` to apply 5 suggestions)
[INFO] [stderr] warning: `sequ_edit` (lib test) generated 4 warnings (1 duplicate) (run `cargo fix --lib -p sequ_edit --tests` to apply 2 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/sequ_edit-d0f84967e518d659)
[INFO] [stdout] running 15 tests
[INFO] [stdout] test likelihood::allowable_parents ... ok
[INFO] [stdout] test tree::outgroup_balanced_tree ... ok
[INFO] [stdout] test likelihood::allowable_parents_from_leaves ... ok
[INFO] [stdout] test tree::build_phylogeny ... ok
[INFO] [stdout] test star_homoplasy::simple_reconstruction_balanced ... ok
[INFO] [stdout] test tree::outgroup_simple_three_leaf ... ok
[INFO] [stdout] test star_homoplasy::simple_reconstruction_not_balanced ... ok
[INFO] [stdout] test tree::build_tree ... ok
[INFO] [stdout] test tree::sample_phylogeny ... ok
[INFO] [stdout] test tree::test_phylogeny_from_edgelist ... ok
[INFO] [stdout] test likelihood::test_pairwise_likelihood ... ok
[INFO] [stdout] test tree::outgroup_permutation_invariance ... ok
[INFO] [stdout] test tree::outgroup_generated_binary_tree ... ok
[INFO] [stdout] test test_sampling ... FAILED
[INFO] [stdout] test test_percent_resolved has been running for over 60 seconds
[INFO] [stdout] test test_percent_resolved ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_sampling stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'test_sampling' (31) panicked at src/lib.rs:641:58:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x614894b21b0a - std[b80a194dd3c418bb]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x614894b21b0a - std[b80a194dd3c418bb]::backtrace_rs::backtrace::trace_unsynchronized::<std[b80a194dd3c418bb]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x614894b21b0a - std[b80a194dd3c418bb]::sys::backtrace::_print_fmt
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x614894b21b0a - <<std[b80a194dd3c418bb]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[10b6fa85044e1869]::fmt::Display>::fmt
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x614894b376ea - <core[10b6fa85044e1869]::fmt::rt::Argument>::fmt
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x614894b376ea - core[10b6fa85044e1869]::fmt::write
[INFO] [stdout]    6:     0x614894b263e2 - std[b80a194dd3c418bb]::io::default_write_fmt::<alloc[dd269455e567d8e9]::vec::Vec<u8>>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x614894b263e2 - <alloc[dd269455e567d8e9]::vec::Vec<u8> as std[b80a194dd3c418bb]::io::Write>::write_fmt
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x614894b0094f - <std[b80a194dd3c418bb]::sys::backtrace::BacktraceLock>::print
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x614894b0094f - std[b80a194dd3c418bb]::panicking::default_hook::{closure#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x614894b19dd9 - std[b80a194dd3c418bb]::panicking::default_hook
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x614894a4c00c - <alloc[dd269455e567d8e9]::boxed::Box<dyn for<'a, 'b> core[10b6fa85044e1869]::ops::function::Fn<(&'a std[b80a194dd3c418bb]::panic::PanicHookInfo<'b>,), Output = ()> + core[10b6fa85044e1869]::marker::Sync + core[10b6fa85044e1869]::marker::Send> as core[10b6fa85044e1869]::ops::function::Fn<(&std[b80a194dd3c418bb]::panic::PanicHookInfo,)>>::call
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/alloc/src/boxed.rs:2254:9
[INFO] [stdout]   12:     0x614894a4c00c - test[826cbc6ef54ab466]::test_main_with_exit_callback::<test[826cbc6ef54ab466]::test_main::{closure#0}>::{closure#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x614894b1a052 - <alloc[dd269455e567d8e9]::boxed::Box<dyn for<'a, 'b> core[10b6fa85044e1869]::ops::function::Fn<(&'a std[b80a194dd3c418bb]::panic::PanicHookInfo<'b>,), Output = ()> + core[10b6fa85044e1869]::marker::Sync + core[10b6fa85044e1869]::marker::Send> as core[10b6fa85044e1869]::ops::function::Fn<(&std[b80a194dd3c418bb]::panic::PanicHookInfo,)>>::call
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/alloc/src/boxed.rs:2254:9
[INFO] [stdout]   14:     0x614894b1a052 - std[b80a194dd3c418bb]::panicking::panic_with_hook
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x614894b00a08 - std[b80a194dd3c418bb]::panicking::panic_handler::{closure#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x614894af83a9 - std[b80a194dd3c418bb]::sys::backtrace::__rust_end_short_backtrace::<std[b80a194dd3c418bb]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x614894b0171d - __rustc[9698a3e60dd14283]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x614894b37f9c - core[10b6fa85044e1869]::panicking::panic_fmt
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x614894b37d12 - core[10b6fa85044e1869]::result::unwrap_failed
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/result.rs:1867:5
[INFO] [stdout]   20:     0x614894a2e186 - core::result::Result<T,E>::unwrap::h221316ad848c44cc
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/result.rs:1233:23
[INFO] [stdout]   21:     0x614894a2e186 - sequ_edit::test_sampling::hefcc1380b232f85d
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:641:58
[INFO] [stdout]   22:     0x614894a2e407 - sequ_edit::test_sampling::{{closure}}::h027d4a2a363ca1cd
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:626:19
[INFO] [stdout]   23:     0x614894a08a66 - core::ops::function::FnOnce::call_once::h84abb1dd2265daab
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x614894a400eb - <fn() -> core[10b6fa85044e1869]::result::Result<(), alloc[dd269455e567d8e9]::string::String> as core[10b6fa85044e1869]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x614894a400eb - test[826cbc6ef54ab466]::__rust_begin_short_backtrace::<core[10b6fa85044e1869]::result::Result<(), alloc[dd269455e567d8e9]::string::String>, fn() -> core[10b6fa85044e1869]::result::Result<(), alloc[dd269455e567d8e9]::string::String>>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x614894a4cadb - test[826cbc6ef54ab466]::run_test_in_process::{closure#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x614894a4cadb - <core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<test[826cbc6ef54ab466]::run_test_in_process::{closure#0}> as core[10b6fa85044e1869]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x614894a4cadb - std[b80a194dd3c418bb]::panicking::catch_unwind::do_call::<core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<test[826cbc6ef54ab466]::run_test_in_process::{closure#0}>, core[10b6fa85044e1869]::result::Result<(), alloc[dd269455e567d8e9]::string::String>>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:581:40
[INFO] [stdout]   29:     0x614894a4cadb - std[b80a194dd3c418bb]::panicking::catch_unwind::<core[10b6fa85044e1869]::result::Result<(), alloc[dd269455e567d8e9]::string::String>, core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<test[826cbc6ef54ab466]::run_test_in_process::{closure#0}>>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:544:19
[INFO] [stdout]   30:     0x614894a4cadb - std[b80a194dd3c418bb]::panic::catch_unwind::<core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<test[826cbc6ef54ab466]::run_test_in_process::{closure#0}>, core[10b6fa85044e1869]::result::Result<(), alloc[dd269455e567d8e9]::string::String>>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x614894a4cadb - test[826cbc6ef54ab466]::run_test_in_process
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x614894a4cadb - test[826cbc6ef54ab466]::run_test::{closure#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x614894a481f4 - test[826cbc6ef54ab466]::run_test::{closure#1}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x614894a481f4 - std[b80a194dd3c418bb]::sys::backtrace::__rust_begin_short_backtrace::<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   35:     0x614894a4f6e2 - std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked::<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/thread/lifecycle.rs:91:13
[INFO] [stdout]   36:     0x614894a4f6e2 - <core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}> as core[10b6fa85044e1869]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x614894a4f6e2 - std[b80a194dd3c418bb]::panicking::catch_unwind::do_call::<core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>, ()>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:581:40
[INFO] [stdout]   38:     0x614894a4f6e2 - std[b80a194dd3c418bb]::panicking::catch_unwind::<(), core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panicking.rs:544:19
[INFO] [stdout]   39:     0x614894a4f6e2 - std[b80a194dd3c418bb]::panic::catch_unwind::<core[10b6fa85044e1869]::panic::unwind_safe::AssertUnwindSafe<std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>, ()>
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x614894a4f6e2 - std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked::<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/thread/lifecycle.rs:89:26
[INFO] [stdout]   41:     0x614894a4f6e2 - <std[b80a194dd3c418bb]::thread::lifecycle::spawn_unchecked<test[826cbc6ef54ab466]::run_test::{closure#1}, ()>::{closure#1} as core[10b6fa85044e1869]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x614894b2123f - <alloc[dd269455e567d8e9]::boxed::Box<dyn core[10b6fa85044e1869]::ops::function::FnOnce<(), Output = ()> + core[10b6fa85044e1869]::marker::Send> as core[10b6fa85044e1869]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/alloc/src/boxed.rs:2240:9
[INFO] [stdout]   43:     0x614894b2123f - <std[b80a194dd3c418bb]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]                                at /rustc/ad726b5063362ec9897ef3d67452fc5606ee70fa/library/std/src/sys/thread/unix.rs:118:17
[INFO] [stdout]   44:     0x78fce1fd1aa4 - <unknown>
[INFO] [stdout]   45:     0x78fce205ea64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_sampling
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 14 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 223.68s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "bc23b21a8b9a15a96b36de6aecd82ed6f76a4f97d7e7b791899e8b6076d7d86f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bc23b21a8b9a15a96b36de6aecd82ed6f76a4f97d7e7b791899e8b6076d7d86f", kill_on_drop: false }`
[INFO] [stdout] bc23b21a8b9a15a96b36de6aecd82ed6f76a4f97d7e7b791899e8b6076d7d86f
