[INFO] cloning repository https://github.com/MDSYN2019/rust_md_work
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MDSYN2019/rust_md_work" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMDSYN2019%2Frust_md_work", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMDSYN2019%2Frust_md_work'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 54c1787e45796d4abe2c5fada7adb010cbe9e330
[INFO] testing MDSYN2019/rust_md_work against 1.94.0 for beta-1.95-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMDSYN2019%2Frust_md_work" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/MDSYN2019/rust_md_work
[INFO] finished tweaking git repo https://github.com/MDSYN2019/rust_md_work
[INFO] tweaked toml for git repo https://github.com/MDSYN2019/rust_md_work written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/MDSYN2019/rust_md_work on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/MDSYN2019/rust_md_work already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.9
[INFO] [stderr]   Downloaded lazy-init v0.3.0
[INFO] [stderr]   Downloaded anstyle-query v1.1.5
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[INFO] [stderr]   Downloaded shell-words v1.1.1
[INFO] [stderr]   Downloaded build-probe-mpi v0.1.5
[INFO] [stderr]   Downloaded parameterized v2.1.0
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[INFO] [stderr]   Downloaded anstyle-wincon v3.0.11
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[INFO] [stderr]   Downloaded bindgen v0.69.5
[INFO] [stderr]   Downloaded portable-atomic v1.13.1
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[INFO] [stderr]   Downloaded pyo3-ffi v0.22.6
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[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded regex-syntax v0.8.10
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded cc v1.2.55
[INFO] [stderr]   Downloaded thiserror-impl v2.0.18
[INFO] [stderr]   Downloaded thiserror v2.0.18
[INFO] [stderr]   Downloaded pyo3-build-config v0.22.6
[INFO] [stderr]   Downloaded rand_distr v0.5.1
[INFO] [stderr]   Downloaded env_logger v0.11.9
[INFO] [stderr]   Downloaded conv v0.3.3
[INFO] [stderr]   Downloaded indoc v2.0.7
[INFO] [stderr]   Downloaded pyo3 v0.22.6
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded libloading v0.8.9
[INFO] [stderr]   Downloaded regex-automata v0.4.14
[INFO] [stderr]   Downloaded mpi-sys v0.2.3
[INFO] [stderr]   Downloaded rawpointer v0.2.1
[INFO] [stderr]   Downloaded nalgebra-macros v0.2.2
[INFO] [stderr]   Downloaded parameterized-macro v3.0.0
[INFO] [stderr]   Downloaded jiff v0.2.23
[INFO] [stderr]   Downloaded libc v0.2.172
[INFO] [stderr]   Downloaded pyo3-macros v0.22.6
[INFO] [stderr]   Downloaded libffi-sys v4.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 58ef9825431354d86293bf51dac47310983e2aec133136feb613d080832f4b90
[INFO] running `Command { std: "docker" "start" "-a" "58ef9825431354d86293bf51dac47310983e2aec133136feb613d080832f4b90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "58ef9825431354d86293bf51dac47310983e2aec133136feb613d080832f4b90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "58ef9825431354d86293bf51dac47310983e2aec133136feb613d080832f4b90", kill_on_drop: false }`
[INFO] [stdout] 58ef9825431354d86293bf51dac47310983e2aec133136feb613d080832f4b90
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] aaa94b74ab818fb1fc281538f1ae888e767f7fa2da89e872071611dac3de3ec0
[INFO] running `Command { std: "docker" "start" "-a" "aaa94b74ab818fb1fc281538f1ae888e767f7fa2da89e872071611dac3de3ec0", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling libm v0.2.13
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling zerocopy v0.8.24
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling typenum v1.18.0
[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling hashbrown v0.16.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling indexmap v2.11.4
[INFO] [stderr]    Compiling xdrfile v0.3.0
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling rand v0.9.1
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling jiff v0.2.23
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling lazy-init v0.3.0
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling rand_distr v0.5.1
[INFO] [stderr]    Compiling env_filter v1.0.0
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling assert-type-eq v0.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling parameterized-macro v3.0.0
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling parameterized v2.1.0
[INFO] [stderr]    Compiling env_logger v0.11.9
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling sang_md v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 46.49s
[INFO] running `Command { std: "docker" "inspect" "aaa94b74ab818fb1fc281538f1ae888e767f7fa2da89e872071611dac3de3ec0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aaa94b74ab818fb1fc281538f1ae888e767f7fa2da89e872071611dac3de3ec0", kill_on_drop: false }`
[INFO] [stdout] aaa94b74ab818fb1fc281538f1ae888e767f7fa2da89e872071611dac3de3ec0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dd3226f798f6f424cbc3d95832afbb0d72a5a4656dac48c582b8cc515ca8b487
[INFO] running `Command { std: "docker" "start" "-a" "dd3226f798f6f424cbc3d95832afbb0d72a5a4656dac48c582b8cc515ca8b487", kill_on_drop: false }`
[INFO] [stderr]    Compiling sang_md v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.53s
[INFO] running `Command { std: "docker" "inspect" "dd3226f798f6f424cbc3d95832afbb0d72a5a4656dac48c582b8cc515ca8b487", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dd3226f798f6f424cbc3d95832afbb0d72a5a4656dac48c582b8cc515ca8b487", kill_on_drop: false }`
[INFO] [stdout] dd3226f798f6f424cbc3d95832afbb0d72a5a4656dac48c582b8cc515ca8b487
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8261c7cfe4f1af7532cbfcd3b908785d54367f8e4321aa2ae9f61fa83b76bbca
[INFO] running `Command { std: "docker" "start" "-a" "8261c7cfe4f1af7532cbfcd3b908785d54367f8e4321aa2ae9f61fa83b76bbca", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/sang_md-28ba20fa62813ab9)
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test molecule::io::tests::parses_basic_gro_records ... ok
[INFO] [stdout] test molecule::io::tests::parses_basic_pdb_records ... ok
[INFO] [stdout] test molecule::martini::tests::parses_c6_c12_atomtypes ... ok
[INFO] [stdout] test molecule::martini::tests::parses_martini_itp_and_builds_system ... ok
[INFO] [stdout] test molecule::molecule::tests::test_atom ... ok
[INFO] [stdout] test tests::test_double_loop ... ok
[INFO] [stdout] test molecule::molecule::tests::test_bond_distance_happy ... ok
[INFO] [stdout] test molecule::molecule::tests::test_dihedral_energy_phase_shift ... ok
[INFO] [stdout] test molecule::io::tests::writes_gro_records ... ok
[INFO] [stdout] test molecule::molecule::tests::test_angle_force_energy_zero_at_equilibrium ... ok
[INFO] [stdout] test tests::test_lennard_jones ... ok
[INFO] [stdout] test tests::berenden_pull_towards_target has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "8261c7cfe4f1af7532cbfcd3b908785d54367f8e4321aa2ae9f61fa83b76bbca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8261c7cfe4f1af7532cbfcd3b908785d54367f8e4321aa2ae9f61fa83b76bbca", kill_on_drop: false }`
[INFO] [stdout] 8261c7cfe4f1af7532cbfcd3b908785d54367f8e4321aa2ae9f61fa83b76bbca
