[INFO] cloning repository https://github.com/Crispy13/sequenza-utils-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Crispy13/sequenza-utils-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCrispy13%2Fsequenza-utils-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCrispy13%2Fsequenza-utils-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 58f7f5457c19ba24b8b2440604fd9d4c480137d9
[INFO] testing Crispy13/sequenza-utils-rs against 1.94.0 for beta-1.95-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCrispy13%2Fsequenza-utils-rs" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Crispy13/sequenza-utils-rs
[INFO] finished tweaking git repo https://github.com/Crispy13/sequenza-utils-rs
[INFO] tweaked toml for git repo https://github.com/Crispy13/sequenza-utils-rs written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Crispy13/sequenza-utils-rs on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Crispy13/sequenza-utils-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/Crispy13/rust-htslib.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/Crispy13/hts-sys.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htscodecs.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.110
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.110
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.110
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.110
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded mimalloc v0.1.48
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded js-sys v0.3.87
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded libdeflate-sys v1.25.2
[INFO] [stderr]   Downloaded zlib-rs v0.6.2
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.44
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b174b3efb7f131d922997235de673d3e24ffd45526e875c318dc1440255c51c5
[INFO] running `Command { std: "docker" "start" "-a" "b174b3efb7f131d922997235de673d3e24ffd45526e875c318dc1440255c51c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b174b3efb7f131d922997235de673d3e24ffd45526e875c318dc1440255c51c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b174b3efb7f131d922997235de673d3e24ffd45526e875c318dc1440255c51c5", kill_on_drop: false }`
[INFO] [stdout] b174b3efb7f131d922997235de673d3e24ffd45526e875c318dc1440255c51c5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c77cdb3a653b5a62f17976081cf7ead69791104c83b152587ad80f00c659ba76
[INFO] running `Command { std: "docker" "start" "-a" "c77cdb3a653b5a62f17976081cf7ead69791104c83b152587ad80f00c659ba76", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling clap_lex v1.0.0
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.44
[INFO] [stderr]    Compiling getrandom v0.4.1
[INFO] [stderr]    Compiling iana-time-zone v0.1.65
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling zlib-rs v0.6.2
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling clap_builder v4.5.60
[INFO] [stderr]    Compiling chrono v0.4.43
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling mimalloc v0.1.48
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling tempfile v3.25.0
[INFO] [stderr]    Compiling matchers v0.2.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling clap v4.5.60
[INFO] [stderr]    Compiling sequenza-utils v0.1.13 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 28.76s
[INFO] running `Command { std: "docker" "inspect" "c77cdb3a653b5a62f17976081cf7ead69791104c83b152587ad80f00c659ba76", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c77cdb3a653b5a62f17976081cf7ead69791104c83b152587ad80f00c659ba76", kill_on_drop: false }`
[INFO] [stdout] c77cdb3a653b5a62f17976081cf7ead69791104c83b152587ad80f00c659ba76
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 59fb8091c0efa0c220c04d21673efec9c2a5f86c826af43c22f5794be75375d6
[INFO] running `Command { std: "docker" "start" "-a" "59fb8091c0efa0c220c04d21673efec9c2a5f86c826af43c22f5794be75375d6", kill_on_drop: false }`
[INFO] [stderr]    Compiling sequenza-utils v0.1.13 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.75s
[INFO] running `Command { std: "docker" "inspect" "59fb8091c0efa0c220c04d21673efec9c2a5f86c826af43c22f5794be75375d6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "59fb8091c0efa0c220c04d21673efec9c2a5f86c826af43c22f5794be75375d6", kill_on_drop: false }`
[INFO] [stdout] 59fb8091c0efa0c220c04d21673efec9c2a5f86c826af43c22f5794be75375d6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] a150a23054ee906eed83ec1c1218eadd3717d21d9d2dc112c0c58d9e1e4575b2
[INFO] running `Command { std: "docker" "start" "-a" "a150a23054ee906eed83ec1c1218eadd3717d21d9d2dc112c0c58d9e1e4575b2", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/sequenza_utils-8ea828cc39a4de15)
[INFO] [stdout] 
[INFO] [stdout] running 44 tests
[INFO] [stdout] test cli::tests::parses_legacy_normal2_flag ... ok
[INFO] [stdout] test cli::tests::accepts_parallel_single_output_stdout ... ok
[INFO] [stdout] test cli::tests::accepts_parallel_stdout_for_auto_binned_mode ... ok
[INFO] [stdout] test cli::tests::parses_experimental_rust_htslib_backend ... ok
[INFO] [stdout] test cli::tests::parses_quality_format_illumina ... ok
[INFO] [stdout] test cli::tests::parses_minimal_bam_arguments ... ok
[INFO] [stdout] test cli::tests::parses_parallel_single_output_flag ... ok
[INFO] [stdout] test cli::tests::rejects_missing_fasta_for_bam_input ... ok
[INFO] [stdout] test cli::tests::rejects_parallel_multi_output_stdout ... ok
[INFO] [stdout] test cli::tests::rejects_single_ranged_region_with_parallel ... ok
[INFO] [stdout] test external_tools::tests::builds_mpileup_command_with_regions ... ok
[INFO] [stdout] test pipeline::tests::adaptive_auto_bin_keeps_default_for_large_coverage ... ok
[INFO] [stdout] test pipeline::tests::adaptive_auto_bin_shrinks_for_small_coverage ... ok
[INFO] [stdout] test pipeline::tests::auto_bin_derivation_uses_explicit_chromosomes_deduped_and_ordered ... ok
[INFO] [stdout] test pipeline::tests::auto_bin_respects_input_chromosome_order ... ok
[INFO] [stdout] test pipeline::tests::auto_bins_gc_intervals_for_requested_chromosomes ... ok
[INFO] [stdout] test pipeline::tests::build_plan_for_parallel_outputs ... ok
[INFO] [stdout] test cli::tests::parses_pileup_without_fasta ... ok
[INFO] [stdout] test pipeline::tests::gc_lookup_cursor_matches_gc_value_at ... ok
[INFO] [stdout] test pipeline::tests::auto_bins_support_chr_prefix_aliases ... ok
[INFO] [stdout] test pipeline::tests::filter_regions_supports_chr_prefix_aliases ... ok
[INFO] [stdout] test pipeline::tests::gc_lookup_supports_chr_prefix_aliases ... ok
[INFO] [stdout] test pipeline::tests::collect_pileup_chromosomes_from_reader_dedups_preserving_order ... ok
[INFO] [stdout] test pipeline::tests::dedup_chromosomes_preserves_first_seen_order ... ok
[INFO] [stdout] test pipeline::tests::gc_lookup_cursor_handles_chromosome_switches_and_backtracking ... ok
[INFO] [stdout] test pipeline::tests::parse_i32_ascii_rejects_invalid_or_overflow ... ok
[INFO] [stdout] test pipeline::tests::parse_i32_ascii_supports_signed_values_and_limits ... ok
[INFO] [stdout] test pipeline::tests::parses_gc_intervals_and_lookup ... ok
[INFO] [stdout] test pipeline::tests::parses_gc_intervals_with_trailing_whitespace ... ok
[INFO] [stdout] test pipeline::tests::remaps_gc_intervals_to_preferred_chromosome_style ... ok
[INFO] [stdout] test pipeline::tests::build_plan_sets_ascii_quality_threshold ... ok
[INFO] [stdout] test seqz_core::tests::seqz_header_shape_matches_python ... ok
[INFO] [stdout] test seqz_core::tests::py_round3_matches_python_ties_to_even ... ok
[INFO] [stdout] test cli::tests::rejects_backend_selection_for_pileup_mode ... ok
[INFO] [stdout] test cli::tests::parses_progress_flag ... ok
[INFO] [stdout] test seqz_core::tests::typed_api_matches_do_seqz_for_representative_cases ... ok
[INFO] [stdout] test seqz_core::tests::depth_ratio_str_matches_python_rounding_modes ... ok
[INFO] [stdout] test writer::tests::writes_tab_delimited_header ... ok
[INFO] [stdout] test pipeline::tests::auto_binning_enabled_for_parallel_non_ranged_regions ... ok
[INFO] [stdout] test pipeline::tests::filters_regions_without_gc_overlap ... ok
[INFO] [stdout] test seqz_core::tests::do_seqz_matches_python_reference_cases ... ok
[INFO] [stdout] test cli::tests::accepts_parallel_without_chromosome_for_bam_input ... ok
[INFO] [stdout] test pipeline::tests::auto_bin_derivation_without_explicit_regions_keeps_detected_contigs_order ... FAILED
[INFO] [stdout] test tests::wiring_parses_and_runs_stub_pipeline ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- pipeline::tests::auto_bin_derivation_without_explicit_regions_keeps_detected_contigs_order stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'pipeline::tests::auto_bin_derivation_without_explicit_regions_keeps_detected_contigs_order' (43) panicked at src/pipeline.rs:2935:14:
[INFO] [stdout] expected temporary script directory: Custom { kind: NotFound, error: PathError { path: "/opt/rustwide/workdir/tmp/fake_samtools_idxstats_qMUtwY", err: Os { code: 2, kind: NotFound, message: "No such file or directory" } } }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6083ce02ec12 - std::backtrace_rs::backtrace::libunwind::trace::hff358a60abf734fc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x6083ce02ec12 - std::backtrace_rs::backtrace::trace_unsynchronized::h3b121f916dd95ec6
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x6083ce02ec12 - std::sys::backtrace::_print_fmt::hde0a62ded68798e9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x6083ce02ec12 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h93773fc827e3113d
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x6083ce04027a - core::fmt::rt::Argument::fmt::h01eff69902dad97f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x6083ce04027a - core::fmt::write::hed7b5c73d82ecb7c
[INFO] [stdout]    6:     0x6083cdffa4f6 - std::io::default_write_fmt::h2f696ff5b8bbaa4b
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x6083cdffa4f6 - std::io::Write::write_fmt::h5e66814db8a9cfce
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x6083ce00ce49 - std::sys::backtrace::BacktraceLock::print::h8b1d6fcc5a56d1a3
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x6083ce00ce49 - std::panicking::default_hook::{{closure}}::h2be84df4f189ae36
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x6083ce00cce1 - std::panicking::default_hook::hf0ea8939246f43a9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x6083cde249fe - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h02d35e3888986252
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x6083cde249fe - test::test_main_with_exit_callback::{{closure}}::h939640a27d647173
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x6083ce00d172 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hc9df09ff391af3e7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x6083ce00d172 - std::panicking::panic_with_hook::hb4bd9ac1123582a0
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x6083ce00cf08 - std::panicking::panic_handler::{{closure}}::hde00dd15f5637fe2
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x6083ce0079a9 - std::sys::backtrace::__rust_end_short_backtrace::hb72197fa777c1785
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x6083cdfee6ad - __rustc[4425a7e20b4c8619]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x6083ce048e3c - core::panicking::panic_fmt::ha59b517dd231f4da
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x6083ce048622 - core::result::unwrap_failed::hf2d1f30a3ac850fc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/result.rs:1867:5
[INFO] [stdout]   20:     0x6083cdd90c42 - core::result::Result<T,E>::expect::h1ae65e01bf75215b
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/result.rs:1185:23
[INFO] [stdout]   21:     0x6083cdd3a0e6 - sequenza_utils::pipeline::tests::auto_bin_derivation_without_explicit_regions_keeps_detected_contigs_order::h8016741ad22e7c9b
[INFO] [stdout]                                at /opt/rustwide/workdir/src/pipeline.rs:2935:14
[INFO] [stdout]   22:     0x6083cdd3b247 - sequenza_utils::pipeline::tests::auto_bin_derivation_without_explicit_regions_keeps_detected_contigs_order::{{closure}}::hbee9757ea99404b1
[INFO] [stdout]                                at /opt/rustwide/workdir/src/pipeline.rs:2931:83
[INFO] [stdout]   23:     0x6083cdd88886 - core::ops::function::FnOnce::call_once::hbd84af310fc76946
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x6083cde247bb - core::ops::function::FnOnce::call_once::hddb3cd395c36bfbb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x6083cde247bb - test::__rust_begin_short_backtrace::h0b6a7601d9750bfa
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x6083cde381ca - test::run_test_in_process::{{closure}}::h444209903f00b347
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x6083cde381ca - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hfb3ba8f46e537649
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x6083cde381ca - std::panicking::catch_unwind::do_call::h1672a45911fcf9dc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   29:     0x6083cde381ca - std::panicking::catch_unwind::h0fadaee22787a6dd
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   30:     0x6083cde381ca - std::panic::catch_unwind::hc47ad190f2c8e188
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x6083cde381ca - test::run_test_in_process::hcd7faaf934f29999
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x6083cde381ca - test::run_test::{{closure}}::hddc4550da4871867
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x6083cde12624 - test::run_test::{{closure}}::h98ae26689f13ed94
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x6083cde12624 - std::sys::backtrace::__rust_begin_short_backtrace::h3ec4d1f21ad44588
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   35:     0x6083cde15fc2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::{{closure}}::hd8bf2c73d479939f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:91:13
[INFO] [stdout]   36:     0x6083cde15fc2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h3b4248f358af2491
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x6083cde15fc2 - std::panicking::catch_unwind::do_call::hda10a64f4b8daebe
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   38:     0x6083cde15fc2 - std::panicking::catch_unwind::h659e5ee8336ec8c7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   39:     0x6083cde15fc2 - std::panic::catch_unwind::h9d4d66a538912c18
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x6083cde15fc2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::h7557906bb51d79f1
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:89:26
[INFO] [stdout]   41:     0x6083cde15fc2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9e460d1d7fc83d35
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x6083ce002a6f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h61282da819d64ea9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   43:     0x6083ce002a6f - std::sys::thread::unix::Thread::new::thread_start::h982f9ea829d1b5fb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/thread/unix.rs:127:17
[INFO] [stdout]   44:     0x76e76e085aa4 - <unknown>
[INFO] [stdout]   45:     0x76e76e112a64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- tests::wiring_parses_and_runs_stub_pipeline stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::wiring_parses_and_runs_stub_pipeline' (67) panicked at src/lib.rs:68:9:
[INFO] [stdout] assertion failed: crate::run_from_args(args).is_ok()
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6083ce02ec12 - std::backtrace_rs::backtrace::libunwind::trace::hff358a60abf734fc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x6083ce02ec12 - std::backtrace_rs::backtrace::trace_unsynchronized::h3b121f916dd95ec6
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x6083ce02ec12 - std::sys::backtrace::_print_fmt::hde0a62ded68798e9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x6083ce02ec12 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h93773fc827e3113d
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x6083ce04027a - core::fmt::rt::Argument::fmt::h01eff69902dad97f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x6083ce04027a - core::fmt::write::hed7b5c73d82ecb7c
[INFO] [stdout]    6:     0x6083cdffa4f6 - std::io::default_write_fmt::h2f696ff5b8bbaa4b
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x6083cdffa4f6 - std::io::Write::write_fmt::h5e66814db8a9cfce
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x6083ce00ce49 - std::sys::backtrace::BacktraceLock::print::h8b1d6fcc5a56d1a3
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x6083ce00ce49 - std::panicking::default_hook::{{closure}}::h2be84df4f189ae36
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x6083ce00cce1 - std::panicking::default_hook::hf0ea8939246f43a9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x6083cde249fe - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h02d35e3888986252
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x6083cde249fe - test::test_main_with_exit_callback::{{closure}}::h939640a27d647173
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x6083ce00d172 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hc9df09ff391af3e7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x6083ce00d172 - std::panicking::panic_with_hook::hb4bd9ac1123582a0
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x6083ce00cf3a - std::panicking::panic_handler::{{closure}}::hde00dd15f5637fe2
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:691:13
[INFO] [stdout]   16:     0x6083ce0079a9 - std::sys::backtrace::__rust_end_short_backtrace::hb72197fa777c1785
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x6083cdfee6ad - __rustc[4425a7e20b4c8619]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x6083ce048e3c - core::panicking::panic_fmt::ha59b517dd231f4da
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x6083ce048e02 - core::panicking::panic::hbff2745fd4c5afec
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panicking.rs:150:5
[INFO] [stdout]   20:     0x6083cdd9777f - sequenza_utils::tests::wiring_parses_and_runs_stub_pipeline::h21e0240ec1f39b17
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:68:9
[INFO] [stdout]   21:     0x6083cdd97837 - sequenza_utils::tests::wiring_parses_and_runs_stub_pipeline::{{closure}}::h458f80a3bd6e5137
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:41:46
[INFO] [stdout]   22:     0x6083cdd88636 - core::ops::function::FnOnce::call_once::h99857c131b781256
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   23:     0x6083cde247bb - core::ops::function::FnOnce::call_once::hddb3cd395c36bfbb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x6083cde247bb - test::__rust_begin_short_backtrace::h0b6a7601d9750bfa
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:663:18
[INFO] [stdout]   25:     0x6083cde381ca - test::run_test_in_process::{{closure}}::h444209903f00b347
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:74
[INFO] [stdout]   26:     0x6083cde381ca - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hfb3ba8f46e537649
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   27:     0x6083cde381ca - std::panicking::catch_unwind::do_call::h1672a45911fcf9dc
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   28:     0x6083cde381ca - std::panicking::catch_unwind::h0fadaee22787a6dd
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   29:     0x6083cde381ca - std::panic::catch_unwind::hc47ad190f2c8e188
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   30:     0x6083cde381ca - test::run_test_in_process::hcd7faaf934f29999
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:686:27
[INFO] [stdout]   31:     0x6083cde381ca - test::run_test::{{closure}}::hddc4550da4871867
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:607:43
[INFO] [stdout]   32:     0x6083cde12624 - test::run_test::{{closure}}::h98ae26689f13ed94
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/test/src/lib.rs:637:41
[INFO] [stdout]   33:     0x6083cde12624 - std::sys::backtrace::__rust_begin_short_backtrace::h3ec4d1f21ad44588
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   34:     0x6083cde15fc2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::{{closure}}::hd8bf2c73d479939f
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:91:13
[INFO] [stdout]   35:     0x6083cde15fc2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h3b4248f358af2491
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   36:     0x6083cde15fc2 - std::panicking::catch_unwind::do_call::hda10a64f4b8daebe
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:581:40
[INFO] [stdout]   37:     0x6083cde15fc2 - std::panicking::catch_unwind::h659e5ee8336ec8c7
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panicking.rs:544:19
[INFO] [stdout]   38:     0x6083cde15fc2 - std::panic::catch_unwind::h9d4d66a538912c18
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/panic.rs:359:14
[INFO] [stdout]   39:     0x6083cde15fc2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::h7557906bb51d79f1
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/thread/lifecycle.rs:89:26
[INFO] [stdout]   40:     0x6083cde15fc2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9e460d1d7fc83d35
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   41:     0x6083ce002a6f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h61282da819d64ea9
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   42:     0x6083ce002a6f - std::sys::thread::unix::Thread::new::thread_start::h982f9ea829d1b5fb
[INFO] [stdout]                                at /rustc/4a4ef493e3a1488c6e321570238084b38948f6db/library/std/src/sys/thread/unix.rs:127:17
[INFO] [stdout]   43:     0x76e76e085aa4 - <unknown>
[INFO] [stdout]   44:     0x76e76e112a64 - clone
[INFO] [stdout]   45:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     pipeline::tests::auto_bin_derivation_without_explicit_regions_keeps_detected_contigs_order
[INFO] [stdout]     tests::wiring_parses_and_runs_stub_pipeline
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 42 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "a150a23054ee906eed83ec1c1218eadd3717d21d9d2dc112c0c58d9e1e4575b2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a150a23054ee906eed83ec1c1218eadd3717d21d9d2dc112c0c58d9e1e4575b2", kill_on_drop: false }`
[INFO] [stdout] a150a23054ee906eed83ec1c1218eadd3717d21d9d2dc112c0c58d9e1e4575b2
