[INFO] cloning repository https://github.com/TTTPOB/deeptools-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TTTPOB/deeptools-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTTTPOB%2Fdeeptools-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTTTPOB%2Fdeeptools-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 244d32db609df1f8d1df0444683862a036fa8c55
[INFO] testing TTTPOB/deeptools-rs against 1.94.0 for beta-1.95-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTTTPOB%2Fdeeptools-rs" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/TTTPOB/deeptools-rs
[INFO] finished tweaking git repo https://github.com/TTTPOB/deeptools-rs
[INFO] tweaked toml for git repo https://github.com/TTTPOB/deeptools-rs written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/TTTPOB/deeptools-rs on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/TTTPOB/deeptools-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded clap v4.5.50
[INFO] [stderr]   Downloaded ufmt-macros v0.3.0
[INFO] [stderr]   Downloaded ufmt-write v0.1.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded byteordered v0.6.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded index_list v0.2.17
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded libdeflater v0.13.0
[INFO] [stderr]   Downloaded webpki v0.22.4
[INFO] [stderr]   Downloaded attohttpc v0.25.0
[INFO] [stderr]   Downloaded cc v1.2.43
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded ufmt v0.2.0
[INFO] [stderr]   Downloaded libdeflate-sys v0.13.0
[INFO] [stderr]   Downloaded clap_builder v4.5.50
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded bigtools v0.5.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0594f18d7ae9abd6ebe8303dd42bb7cd8b302dae7676490bb3ac7951192aeda6
[INFO] running `Command { std: "docker" "start" "-a" "0594f18d7ae9abd6ebe8303dd42bb7cd8b302dae7676490bb3ac7951192aeda6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0594f18d7ae9abd6ebe8303dd42bb7cd8b302dae7676490bb3ac7951192aeda6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0594f18d7ae9abd6ebe8303dd42bb7cd8b302dae7676490bb3ac7951192aeda6", kill_on_drop: false }`
[INFO] [stdout] 0594f18d7ae9abd6ebe8303dd42bb7cd8b302dae7676490bb3ac7951192aeda6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6d18136f8626e748cd3f4b7f07d45703dff05ba436f3043a064c94307b2b3b94
[INFO] running `Command { std: "docker" "start" "-a" "6d18136f8626e748cd3f4b7f07d45703dff05ba436f3043a064c94307b2b3b94", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling icu_properties_data v2.1.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
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[INFO] [stderr]    Compiling syn v2.0.108
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[INFO] [stderr]    Compiling num-complex v0.4.6
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[INFO] [stderr]    Compiling semver v0.1.20
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[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling syn v1.0.109
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[INFO] [stderr]    Compiling approx v0.5.1
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[INFO] [stderr]    Compiling cc v1.2.43
[INFO] [stderr]    Compiling futures-channel v0.3.31
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling syn v0.15.44
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[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling bitflags v2.10.0
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[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling ufmt-write v0.1.0
[INFO] [stderr]    Compiling zlib-rs v0.5.2
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling rand_core v0.6.4
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[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling byteordered v0.6.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling tokio v1.48.0
[INFO] [stderr]    Compiling ordered-float v5.1.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling index_list v0.2.17
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling libdeflater v0.13.0
[INFO] [stderr]    Compiling ufmt-macros v0.3.0
[INFO] [stderr]    Compiling libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling ufmt v0.2.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling futures-macro v0.3.31
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling rustls-webpki v0.101.7
[INFO] [stderr]    Compiling sct v0.7.1
[INFO] [stderr]    Compiling webpki v0.22.4
[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling yoke v0.8.1
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling zerovec v0.11.5
[INFO] [stderr]    Compiling zerotrie v0.2.3
[INFO] [stderr]    Compiling clap v4.5.50
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling tinystr v0.8.2
[INFO] [stderr]    Compiling potential_utf v0.1.4
[INFO] [stderr]    Compiling icu_collections v2.1.1
[INFO] [stderr]    Compiling icu_locale_core v2.1.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling icu_provider v2.1.1
[INFO] [stderr]    Compiling icu_properties v2.1.1
[INFO] [stderr]    Compiling icu_normalizer v2.1.1
[INFO] [stderr]    Compiling futures-executor v0.3.31
[INFO] [stderr]    Compiling futures v0.3.31
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.7
[INFO] [stderr]    Compiling attohttpc v0.25.0
[INFO] [stderr]    Compiling bigtools v0.5.6
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling compute_matrix_rs v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 23s
[INFO] running `Command { std: "docker" "inspect" "6d18136f8626e748cd3f4b7f07d45703dff05ba436f3043a064c94307b2b3b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6d18136f8626e748cd3f4b7f07d45703dff05ba436f3043a064c94307b2b3b94", kill_on_drop: false }`
[INFO] [stdout] 6d18136f8626e748cd3f4b7f07d45703dff05ba436f3043a064c94307b2b3b94
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 297f1f4714f193ccf99f76d9c4a58926c241f38ee7d535b06f3f201105de294f
[INFO] running `Command { std: "docker" "start" "-a" "297f1f4714f193ccf99f76d9c4a58926c241f38ee7d535b06f3f201105de294f", kill_on_drop: false }`
[INFO] [stderr]    Compiling compute_matrix_rs v0.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: struct `TestBin` is never constructed
[INFO] [stdout]    --> src/pipeline/core/mod.rs:922:12
[INFO] [stdout]     |
[INFO] [stdout] 922 |     struct TestBin {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `TestPlan` is never constructed
[INFO] [stdout]    --> src/pipeline/core/mod.rs:942:12
[INFO] [stdout]     |
[INFO] [stdout] 942 |     struct TestPlan {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.35s
[INFO] running `Command { std: "docker" "inspect" "297f1f4714f193ccf99f76d9c4a58926c241f38ee7d535b06f3f201105de294f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "297f1f4714f193ccf99f76d9c4a58926c241f38ee7d535b06f3f201105de294f", kill_on_drop: false }`
[INFO] [stdout] 297f1f4714f193ccf99f76d9c4a58926c241f38ee7d535b06f3f201105de294f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2739be4cac80b37621b1c931883e493982d69b3229d35823b04ee1f86d8bfad9
[INFO] running `Command { std: "docker" "start" "-a" "2739be4cac80b37621b1c931883e493982d69b3229d35823b04ee1f86d8bfad9", kill_on_drop: false }`
[INFO] [stderr] warning: struct `TestBin` is never constructed
[INFO] [stderr]    --> src/pipeline/core/mod.rs:922:12
[INFO] [stderr]     |
[INFO] [stderr] 922 |     struct TestBin {
[INFO] [stderr]     |            ^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: struct `TestPlan` is never constructed
[INFO] [stderr]    --> src/pipeline/core/mod.rs:942:12
[INFO] [stderr]     |
[INFO] [stderr] 942 |     struct TestPlan {
[INFO] [stderr]     |            ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `compute_matrix_rs` (lib test) generated 2 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/compute_matrix_rs-01bcd4551450415e)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test io::readers::bed::tests::parses_basic_bed_line ... ok
[INFO] [stdout] test io::readers::bed::tests::extracts_bed12_exons ... ok
[INFO] [stdout] test io::readers::bed::tests::keeps_invalid_score_and_strand_as_raw_strings ... ok
[INFO] [stdout] test io::readers::bed::tests::reader_skips_comments_and_blank_lines ... ok
[INFO] [stdout] test pipeline::core::tests::aggregate_slice_ignores_nans ... ok
[INFO] [stdout] test pipeline::core::tests::index_from_coordinate_bounds_checks ... ok
[INFO] [stdout] test pipeline::zones::tests::metagene_reference_point_skips_introns ... ok
[INFO] [stdout] test pipeline::zones::tests::metagene_scale_regions_collapses_introns ... ok
[INFO] [stdout] test pipeline::zones::tests::reference_plan_negative_strand ... ok
[INFO] [stdout] test pipeline::zones::tests::reference_plan_positive_strand ... ok
[INFO] [stdout] test pipeline::zones::tests::scale_plan_negative_strand ... ok
[INFO] [stdout] test pipeline::zones::tests::scale_plan_positive_strand ... ok
[INFO] [stdout] test io::readers::gtf::tests::attaches_exons_even_if_seen_first ... ok
[INFO] [stdout] test io::readers::gtf::tests::parses_basic_transcript ... ok
[INFO] [stdout] test io::readers::gtf::tests::skips_features_without_ids ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/compute_matrix_rs-d2590853742978d2)
[INFO] [stderr]    Doc-tests compute_matrix_rs
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "2739be4cac80b37621b1c931883e493982d69b3229d35823b04ee1f86d8bfad9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2739be4cac80b37621b1c931883e493982d69b3229d35823b04ee1f86d8bfad9", kill_on_drop: false }`
[INFO] [stdout] 2739be4cac80b37621b1c931883e493982d69b3229d35823b04ee1f86d8bfad9
