[INFO] cloning repository https://github.com/nextgenusfs/annorefine
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nextgenusfs/annorefine" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnextgenusfs%2Fannorefine", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnextgenusfs%2Fannorefine'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4341ebb81cb6f581180fe16e9600caccf9a55391
[INFO] testing nextgenusfs/annorefine against 1.94.0 for beta-1.95-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnextgenusfs%2Fannorefine" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/nextgenusfs/annorefine
[INFO] finished tweaking git repo https://github.com/nextgenusfs/annorefine
[INFO] tweaked toml for git repo https://github.com/nextgenusfs/annorefine written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/nextgenusfs/annorefine on toolchain 1.94.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/nextgenusfs/annorefine already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.94.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded tempfile v3.22.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded serde v1.0.225
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded windows-result v0.4.0
[INFO] [stderr]   Downloaded windows-strings v0.5.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.103
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded js-sys v0.3.80
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded pyo3-ffi v0.22.6
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.22.6
[INFO] [stderr]   Downloaded openssl-sys v0.9.109
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.103
[INFO] [stderr]   Downloaded clap v4.5.47
[INFO] [stderr]   Downloaded clap_builder v4.5.47
[INFO] [stderr]   Downloaded windows-core v0.62.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded wasm-bindgen-backend v0.2.103
[INFO] [stderr]   Downloaded clap_derive v4.5.47
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded cc v1.2.37
[INFO] [stderr]   Downloaded serde_core v1.0.225
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.1
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded pyo3-build-config v0.22.6
[INFO] [stderr]   Downloaded pyo3-macros v0.22.6
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded serde_derive v1.0.225
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.103
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded pyo3 v0.22.6
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.103
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] [stderr]   Downloaded curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]   Downloaded windows-sys v0.61.0
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded openssl-src v300.5.2+3.5.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] be252f9de9c2286fb0ae6f576682e6d1682fcf91ddacbf20d059363354ff8975
[INFO] running `Command { std: "docker" "start" "-a" "be252f9de9c2286fb0ae6f576682e6d1682fcf91ddacbf20d059363354ff8975", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "be252f9de9c2286fb0ae6f576682e6d1682fcf91ddacbf20d059363354ff8975", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "be252f9de9c2286fb0ae6f576682e6d1682fcf91ddacbf20d059363354ff8975", kill_on_drop: false }`
[INFO] [stdout] be252f9de9c2286fb0ae6f576682e6d1682fcf91ddacbf20d059363354ff8975
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 633c0d8c5aa158eb5c49213b2b59d11a4d73534a742372301c9a2ba980d2068a
[INFO] running `Command { std: "docker" "start" "-a" "633c0d8c5aa158eb5c49213b2b59d11a4d73534a742372301c9a2ba980d2068a", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]    Compiling find-msvc-tools v0.1.1
[INFO] [stderr]    Compiling serde_core v1.0.225
[INFO] [stderr]    Compiling serde v1.0.225
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bytemuck v1.23.2
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling indexmap v2.11.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling cc v1.2.37
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling clap_builder v4.5.47
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling jiff v0.2.15
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling colored v3.0.0
[INFO] [stderr]    Compiling regex-automata v0.4.10
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.5.2+3.5.2
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling openssl-sys v0.9.109
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling env_filter v0.1.3
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.0
[INFO] [stderr]    Compiling zerovec-derive v0.11.1
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.225
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.16
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.47
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling thiserror v2.0.16
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.8.0
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling zerovec v0.11.4
[INFO] [stderr]    Compiling zerotrie v0.2.2
[INFO] [stderr]    Compiling clap v4.5.47
[INFO] [stderr]    Compiling tinystr v0.8.1
[INFO] [stderr]    Compiling potential_utf v0.1.3
[INFO] [stderr]    Compiling icu_collections v2.0.0
[INFO] [stderr]    Compiling icu_locale_core v2.0.0
[INFO] [stderr]    Compiling icu_provider v2.0.0
[INFO] [stderr]    Compiling icu_properties v2.0.1
[INFO] [stderr]    Compiling icu_normalizer v2.0.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling chrono v0.4.42
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.7
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling annorefine v2026.2.22 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 31s
[INFO] running `Command { std: "docker" "inspect" "633c0d8c5aa158eb5c49213b2b59d11a4d73534a742372301c9a2ba980d2068a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "633c0d8c5aa158eb5c49213b2b59d11a4d73534a742372301c9a2ba980d2068a", kill_on_drop: false }`
[INFO] [stdout] 633c0d8c5aa158eb5c49213b2b59d11a4d73534a742372301c9a2ba980d2068a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 23b4e3c88332ea18348920a7d23fd32fc21cc0ac3a6540a319e133ffccda5895
[INFO] running `Command { std: "docker" "start" "-a" "23b4e3c88332ea18348920a7d23fd32fc21cc0ac3a6540a319e133ffccda5895", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling tempfile v3.22.0
[INFO] [stderr]    Compiling annorefine v2026.2.22 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.91s
[INFO] running `Command { std: "docker" "inspect" "23b4e3c88332ea18348920a7d23fd32fc21cc0ac3a6540a319e133ffccda5895", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "23b4e3c88332ea18348920a7d23fd32fc21cc0ac3a6540a319e133ffccda5895", kill_on_drop: false }`
[INFO] [stdout] 23b4e3c88332ea18348920a7d23fd32fc21cc0ac3a6540a319e133ffccda5895
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.94.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 269f43b5e9bc410336c5776e19ed2e5274f4c78e5b1d1c89bc154ec827e96603
[INFO] running `Command { std: "docker" "start" "-a" "269f43b5e9bc410336c5776e19ed2e5274f4c78e5b1d1c89bc154ec827e96603", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.28s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/annorefine-f922260a0b7f79f7)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] test bam2hints::tests::test_block_filtering ... ok
[INFO] [stdout] test bam2hints::tests::test_cigar_parsing ... ok
[INFO] [stdout] test bam2hints::tests::test_alignment_to_blocks ... ok
[INFO] [stdout] test bam2hints::tests::test_config_defaults ... ok
[INFO] [stdout] test bam2hints::tests::test_multiplicity_compression ... ok
[INFO] [stdout] test fasta::tests::test_validate_dna_sequence ... ok
[INFO] [stdout] test bam2hints::tests::test_hint_generation ... ok
[INFO] [stdout] test tests::test_basic_types ... ok
[INFO] [stdout] test tests::test_strand_enum ... ok
[INFO] [stdout] test tests::test_version_info ... ok
[INFO] [stdout] test translation::tests::test_cds_validation ... ok
[INFO] [stdout] test translation::tests::test_genetic_code ... ok
[INFO] [stdout] test bam2hints::tests::test_augustus_hint_gff_format ... ok
[INFO] [stdout] test fasta::tests::test_parse_simple_fasta ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/annorefine-88f603beb8c227ac)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/test_parsing.rs (/opt/rustwide/target/debug/deps/test_parsing-ee17ea1eb7f44bdc)
[INFO] [stderr]    Doc-tests annorefine
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "269f43b5e9bc410336c5776e19ed2e5274f4c78e5b1d1c89bc154ec827e96603", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "269f43b5e9bc410336c5776e19ed2e5274f4c78e5b1d1c89bc154ec827e96603", kill_on_drop: false }`
[INFO] [stdout] 269f43b5e9bc410336c5776e19ed2e5274f4c78e5b1d1c89bc154ec827e96603
