[INFO] cloning repository https://github.com/ywei1081/oxdna-trajectory-reader
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ywei1081/oxdna-trajectory-reader" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fywei1081%2Foxdna-trajectory-reader", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fywei1081%2Foxdna-trajectory-reader'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6d5228a05478fc550a2a98d7e08cc69c0567e126
[INFO] documenting ywei1081/oxdna-trajectory-reader against beta-2026-01-26 for beta-1.94-rustdoc-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fywei1081%2Foxdna-trajectory-reader" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ywei1081/oxdna-trajectory-reader
[INFO] finished tweaking git repo https://github.com/ywei1081/oxdna-trajectory-reader
[INFO] tweaked toml for git repo https://github.com/ywei1081/oxdna-trajectory-reader written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ywei1081/oxdna-trajectory-reader on toolchain beta-2026-01-26
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-01-26" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ywei1081/oxdna-trajectory-reader already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-01-26" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-26" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0231c43b4d713ce8ea6f7109fa0dab63a89035b9f70420fb14bf376ddbfae422
[INFO] running `Command { std: "docker" "start" "-a" "0231c43b4d713ce8ea6f7109fa0dab63a89035b9f70420fb14bf376ddbfae422", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0231c43b4d713ce8ea6f7109fa0dab63a89035b9f70420fb14bf376ddbfae422", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0231c43b4d713ce8ea6f7109fa0dab63a89035b9f70420fb14bf376ddbfae422", kill_on_drop: false }`
[INFO] [stdout] 0231c43b4d713ce8ea6f7109fa0dab63a89035b9f70420fb14bf376ddbfae422
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-26" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ff2440f776e7a4fa4c760ca1b8db5276be017fba9801d66caa9ca66dc055ed56
[INFO] running `Command { std: "docker" "start" "-a" "ff2440f776e7a4fa4c760ca1b8db5276be017fba9801d66caa9ca66dc055ed56", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.13.4
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]     Checking rustc-hash v2.1.0
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling pyo3-build-config v0.27.2
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling syn v2.0.91
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.2
[INFO] [stderr]    Compiling pyo3-ffi v0.27.2
[INFO] [stderr]    Compiling pyo3 v0.27.2
[INFO] [stderr]    Compiling numpy v0.27.1
[INFO] [stderr]    Compiling pyo3-macros v0.27.2
[INFO] [stderr]  Documenting oxdna_trajectory_reader v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 22.57s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/oxdna_trajectory_reader/index.html
[INFO] running `Command { std: "docker" "inspect" "ff2440f776e7a4fa4c760ca1b8db5276be017fba9801d66caa9ca66dc055ed56", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ff2440f776e7a4fa4c760ca1b8db5276be017fba9801d66caa9ca66dc055ed56", kill_on_drop: false }`
[INFO] [stdout] ff2440f776e7a4fa4c760ca1b8db5276be017fba9801d66caa9ca66dc055ed56
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-26" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d2ec3c02e7c8cb032f7c691b32d371e241cb97dca34d7b46111f80d93674b5ba
[INFO] running `Command { std: "docker" "start" "-a" "d2ec3c02e7c8cb032f7c691b32d371e241cb97dca34d7b46111f80d93674b5ba", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stdout] error[E0425]: cannot find type `SourceFile` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.92/src/wrapper.rs:366:26
[INFO] [stdout]     |
[INFO] [stdout] 366 |     Compiler(proc_macro::SourceFile),
[INFO] [stdout]     |                          ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these structs
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::fallback::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `SourceFile`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 366 -     Compiler(proc_macro::SourceFile),
[INFO] [stdout] 366 +     Compiler(SourceFile),
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `SourceFile` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.92/src/wrapper.rs:372:32
[INFO] [stdout]     |
[INFO] [stdout] 372 |     fn nightly(sf: proc_macro::SourceFile) -> Self {
[INFO] [stdout]     |                                ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these structs
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::fallback::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `SourceFile`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 372 -     fn nightly(sf: proc_macro::SourceFile) -> Self {
[INFO] [stdout] 372 +     fn nightly(sf: SourceFile) -> Self {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `source_file` found for reference `&proc_macro::Span` in the current scope
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.92/src/wrapper.rs:462:56
[INFO] [stdout]     |
[INFO] [stdout] 462 |             Span::Compiler(s) => SourceFile::nightly(s.source_file()),
[INFO] [stdout]     |                                                        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: there is a method `source` with a similar name
[INFO] [stdout]     |
[INFO] [stdout] 462 -             Span::Compiler(s) => SourceFile::nightly(s.source_file()),
[INFO] [stdout] 462 +             Span::Compiler(s) => SourceFile::nightly(s.source()),
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `proc-macro2` (lib) due to 3 previous errors
[INFO] running `Command { std: "docker" "inspect" "d2ec3c02e7c8cb032f7c691b32d371e241cb97dca34d7b46111f80d93674b5ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d2ec3c02e7c8cb032f7c691b32d371e241cb97dca34d7b46111f80d93674b5ba", kill_on_drop: false }`
[INFO] [stdout] d2ec3c02e7c8cb032f7c691b32d371e241cb97dca34d7b46111f80d93674b5ba