[INFO] cloning repository https://github.com/MaimonLab/corrosiff-python [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MaimonLab/corrosiff-python" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMaimonLab%2Fcorrosiff-python", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMaimonLab%2Fcorrosiff-python'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 64bebda59cd4f296ef057652256d6495c5f44129 [INFO] documenting MaimonLab/corrosiff-python against beta-2026-01-26 for beta-1.94-rustdoc-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMaimonLab%2Fcorrosiff-python" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/MaimonLab/corrosiff-python [INFO] finished tweaking git repo https://github.com/MaimonLab/corrosiff-python [INFO] tweaked toml for git repo https://github.com/MaimonLab/corrosiff-python written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/MaimonLab/corrosiff-python on toolchain beta-2026-01-26 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-01-26" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/MaimonLab/corrosiff-python already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-01-26" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-26" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 09d1aaec6a33d876a8c553a2d5b1b67b420acfe9a9e058355f761c26dd8866de [INFO] running `Command { std: "docker" "start" "-a" "09d1aaec6a33d876a8c553a2d5b1b67b420acfe9a9e058355f761c26dd8866de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "09d1aaec6a33d876a8c553a2d5b1b67b420acfe9a9e058355f761c26dd8866de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "09d1aaec6a33d876a8c553a2d5b1b67b420acfe9a9e058355f761c26dd8866de", kill_on_drop: false }` [INFO] [stdout] 09d1aaec6a33d876a8c553a2d5b1b67b420acfe9a9e058355f761c26dd8866de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-26" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b0ab2b620a68aba6d55918c7af598b5a9b01375b3465bf2253a023e86ba3c343 [INFO] running `Command { std: "docker" "start" "-a" "b0ab2b620a68aba6d55918c7af598b5a9b01375b3465bf2253a023e86ba3c343", kill_on_drop: false }` [INFO] [stderr] Compiling target-lexicon v0.12.14 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling proc-macro2 v1.0.85 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling binrw_derive v0.14.0 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling owo-colors v3.5.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling binrw v0.14.0 [INFO] [stderr] Compiling pyo3-build-config v0.23.3 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling syn v2.0.66 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Checking bytemuck v1.16.1 [INFO] [stderr] Checking array-init v2.1.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking rustc-hash v2.1.0 [INFO] [stderr] Compiling pyo3-macros-backend v0.23.3 [INFO] [stderr] Compiling pyo3-ffi v0.23.3 [INFO] [stderr] Compiling pyo3 v0.23.3 [INFO] [stderr] Compiling pyo3-macros v0.23.3 [INFO] [stderr] Checking corrosiff v0.1.0 (https://github.com/MaimonLab/Corrosiff.git?branch=dev#1b36bbb0) [INFO] [stderr] Checking numpy v0.23.0 [INFO] [stderr] Documenting corrosiff-python v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:233:5 [INFO] [stdout] | [INFO] [stdout] 233 | / /** [INFO] [stdout] 234 | | * The following methods are used to read metadata (timestamps, [INFO] [stdout] 235 | | * text annotations, etc.) from the file. [INFO] [stdout] 236 | | */ [INFO] [stdout] ... | [INFO] [stdout] 284 | | /// } [INFO] [stdout] 285 | | /// ``` [INFO] [stdout] | |_______________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] (optional) [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:321:5 [INFO] [stdout] | [INFO] [stdout] 321 | / /// Returns an array of timestamps of each frame based on [INFO] [stdout] 322 | | /// counting laser pulses since the start of the experiment. [INFO] [stdout] 323 | | [INFO] [stdout] 324 | | /// Units are seconds. [INFO] [stdout] ... | [INFO] [stdout] 357 | | /// - `get_epoch_timestamps_system` [INFO] [stdout] 358 | | /// - `get_epoch_both` [INFO] [stdout] | |__________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:372:5 [INFO] [stdout] | [INFO] [stdout] 372 | / /// Returns an array of timestamps of each frame based on [INFO] [stdout] 373 | | /// counting laser pulses since the start of the experiment. [INFO] [stdout] 374 | | /// Extremely low jitter, small amounts of drift (maybe 50 milliseconds an hour). [INFO] [stdout] ... | [INFO] [stdout] 407 | | /// - `get_epoch_timestamps_system` [INFO] [stdout] 408 | | /// - `get_epoch_both` [INFO] [stdout] | |__________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:422:5 [INFO] [stdout] | [INFO] [stdout] 422 | / /// Returns an array of timestamps of each frame based on [INFO] [stdout] 423 | | /// the system clock. High jitter, but no drift. [INFO] [stdout] 424 | | [INFO] [stdout] 425 | | /// WARNING if system timestamps do not exist, the function [INFO] [stdout] ... | [INFO] [stdout] 462 | | /// - `get_epoch_timestamps_laser` [INFO] [stdout] 463 | | /// - `get_epoch_both` [INFO] [stdout] | |__________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:478:5 [INFO] [stdout] | [INFO] [stdout] 478 | / /// Returns an array containing both the laser timestamps [INFO] [stdout] 479 | | /// and the system timestamps. [INFO] [stdout] 480 | | [INFO] [stdout] 481 | | /// The first row is laser timestamps, the second [INFO] [stdout] ... | [INFO] [stdout] 520 | | /// - `get_epoch_timestamps_laser` [INFO] [stdout] 521 | | /// - `get_epoch_timestamps_system` [INFO] [stdout] | |_______________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:534:5 [INFO] [stdout] | [INFO] [stdout] 534 | / /// Returns a list of strings containing the text appended [INFO] [stdout] 535 | | /// to each frame. Only returns elements where there was appended text. [INFO] [stdout] 536 | | /// If no frames are provided, searches all frames. [INFO] [stdout] ... | [INFO] [stdout] 566 | | /// text = siffio.get_appended_text(frames = list(range(1000))) [INFO] [stdout] 567 | | /// ``` [INFO] [stdout] | |_______________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:664:5 [INFO] [stdout] | [INFO] [stdout] 664 | / /// Returns a tuple of `(flim_map, intensity_map, confidence_map)` [INFO] [stdout] 665 | | /// where flim_map is the empirical lifetime with the offset of [INFO] [stdout] 666 | | /// params subtracted. WARNING! This is DIFFERENT from the `siffreadermodule` [INFO] [stdout] 667 | | /// implementation, which returns ONLY the empirical lifetime! This [INFO] [stdout] ... | [INFO] [stdout] 730 | | /// ``` [INFO] [stdout] | |_______________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:809:5 [INFO] [stdout] | [INFO] [stdout] 809 | / /// Returns a full-dimensioned array: [INFO] [stdout] 810 | | /// (frames, y, x, arrival_time). This is a [INFO] [stdout] 811 | | /// large array -- with 20 picosecond arrival [INFO] [stdout] 812 | | /// time bins and an 80 MHz laser this is [INFO] [stdout] ... | [INFO] [stdout] 855 | | /// - `flim_map` : For average arrival time + intensity data. [INFO] [stdout] | |______________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : Optional[List[int]] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Dict` [INFO] [stdout] --> src/siffio.rs:821:37 [INFO] [stdout] | [INFO] [stdout] 821 | /// * `registration` : Optional[Dict] [INFO] [stdout] | ^^^^ no item named `Dict` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:885:5 [INFO] [stdout] | [INFO] [stdout] 885 | / /// Retrieves the arrival time histogram from the [INFO] [stdout] 886 | | /// file. Width of the histogram corresponds to the [INFO] [stdout] 887 | | /// number of BINS in the histogram. All frames are compressed [INFO] [stdout] 888 | | /// onto the one axis. For the time units [INFO] [stdout] ... | [INFO] [stdout] 929 | | /// - `get_histogram_masked` : The masked version of this function. [INFO] [stdout] | |________________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:947:5 [INFO] [stdout] | [INFO] [stdout] 947 | / /// Retrieves the arrival time histogram from the [INFO] [stdout] 948 | | /// file. Width of the histogram corresponds to the [INFO] [stdout] 949 | | /// number of BINS in the histogram. For the time units [INFO] [stdout] 950 | | /// of the histogram, use the metadata. [INFO] [stdout] ... | [INFO] [stdout] 981 | | /// ``` [INFO] [stdout] | |___________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:996:5 [INFO] [stdout] | [INFO] [stdout] 996 | / /// Returns a framewise histogram of the arrival [INFO] [stdout] 997 | | /// times of the photons in the mask. [INFO] [stdout] 998 | | [INFO] [stdout] 999 | | /// ## Arguments [INFO] [stdout] ... | [INFO] [stdout] 1048 | | /// - `get_histogram` : The unmasked version of this function. [INFO] [stdout] | |__________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : List[int] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Dict` [INFO] [stdout] --> src/siffio.rs:1009:37 [INFO] [stdout] | [INFO] [stdout] 1009 | /// * `registration` : Optional[Dict] [INFO] [stdout] | ^^^^ no item named `Dict` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:1088:5 [INFO] [stdout] | [INFO] [stdout] 1088 | / /// Mask may have 2 or 3 dimensions, but [INFO] [stdout] 1089 | | /// if so then be aware that the frames will be [INFO] [stdout] 1090 | | /// iterated through sequentially, rather than [INFO] [stdout] 1091 | | /// aware of the correspondence between frame [INFO] [stdout] ... | [INFO] [stdout] 1174 | | /// calls to `sum_roi` for each ROI. [INFO] [stdout] 1175 | | /// - `sum_roi_flim` : The FLIM version of this function. [INFO] [stdout] | |_____________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : Optional[List[int]] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Dict` [INFO] [stdout] --> src/siffio.rs:1111:37 [INFO] [stdout] | [INFO] [stdout] 1111 | /// * `registration` : Optional[Dict] [INFO] [stdout] | ^^^^ no item named `Dict` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:1221:5 [INFO] [stdout] | [INFO] [stdout] 1221 | / /// Masks may have 2 or 3 dimensions each, (i.e. [INFO] [stdout] 1222 | | /// `masks` can be 3d or 4d), but [INFO] [stdout] 1223 | | /// if 4d then be aware that the frames will be [INFO] [stdout] 1224 | | /// iterated through sequentially (see below or as in [INFO] [stdout] ... | [INFO] [stdout] 1312 | | /// - `sum_roi` : Summing a single ROI mask. [INFO] [stdout] 1313 | | /// - `sum_rois_flim` : The FLIM version of this function. [INFO] [stdout] | |______________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : Optional[List[int]] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Dict` [INFO] [stdout] --> src/siffio.rs:1253:37 [INFO] [stdout] | [INFO] [stdout] 1253 | /// * `registration` : Optional[Dict] [INFO] [stdout] | ^^^^ no item named `Dict` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `FLIMParams` [INFO] [stdout] --> src/siffio.rs:1353:5 [INFO] [stdout] | [INFO] [stdout] 1353 | / /// Mask may have 2 or 3 dimensions, but [INFO] [stdout] 1354 | | /// if so then be aware that the frames will be [INFO] [stdout] 1355 | | /// iterated through sequentially, rather than [INFO] [stdout] 1356 | | /// aware of the correspondence between frame [INFO] [stdout] ... | [INFO] [stdout] 1483 | | /// calls to `sum_roi` for each ROI. [INFO] [stdout] 1484 | | /// - `sum_roi` : The intensity-only version of this function. [INFO] [stdout] | |__________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `params` : Optional[FLIMParams] [INFO] [stdout] ^^^^^^^^^^ [INFO] [stdout] = note: no item named `FLIMParams` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:1353:5 [INFO] [stdout] | [INFO] [stdout] 1353 | / /// Mask may have 2 or 3 dimensions, but [INFO] [stdout] 1354 | | /// if so then be aware that the frames will be [INFO] [stdout] 1355 | | /// iterated through sequentially, rather than [INFO] [stdout] 1356 | | /// aware of the correspondence between frame [INFO] [stdout] ... | [INFO] [stdout] 1483 | | /// calls to `sum_roi` for each ROI. [INFO] [stdout] 1484 | | /// - `sum_roi` : The intensity-only version of this function. [INFO] [stdout] | |__________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : Optional[List[int]] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Dict` [INFO] [stdout] --> src/siffio.rs:1395:37 [INFO] [stdout] | [INFO] [stdout] 1395 | /// * `registration` : Optional[Dict] [INFO] [stdout] | ^^^^ no item named `Dict` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `FLIMParams` [INFO] [stdout] --> src/siffio.rs:1620:5 [INFO] [stdout] | [INFO] [stdout] 1620 | / /// Masks may have 2 or 3 dimensions each, (i.e. [INFO] [stdout] 1621 | | /// `masks` can be 3d or 4d), but [INFO] [stdout] 1622 | | /// if 4d then be aware that the frames will be [INFO] [stdout] 1623 | | /// iterated through sequentially (see below or as in [INFO] [stdout] ... | [INFO] [stdout] 1725 | | /// - `sum_roi_flim` : Summing a single ROI mask. [INFO] [stdout] 1726 | | /// - `sum_rois` : The intensity-only version of this function. [INFO] [stdout] | |___________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `params` : Optional[FLIMParams] [INFO] [stdout] ^^^^^^^^^^ [INFO] [stdout] = note: no item named `FLIMParams` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/siffio.rs:1620:5 [INFO] [stdout] | [INFO] [stdout] 1620 | / /// Masks may have 2 or 3 dimensions each, (i.e. [INFO] [stdout] 1621 | | /// `masks` can be 3d or 4d), but [INFO] [stdout] 1622 | | /// if 4d then be aware that the frames will be [INFO] [stdout] 1623 | | /// iterated through sequentially (see below or as in [INFO] [stdout] ... | [INFO] [stdout] 1725 | | /// - `sum_roi_flim` : Summing a single ROI mask. [INFO] [stdout] 1726 | | /// - `sum_rois` : The intensity-only version of this function. [INFO] [stdout] | |___________________________________________________________________^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] * `frames` : Optional[List[int]] [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Dict` [INFO] [stdout] --> src/siffio.rs:1666:37 [INFO] [stdout] | [INFO] [stdout] 1666 | /// * `registration` : Optional[Dict] [INFO] [stdout] | ^^^^ no item named `Dict` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: internal compiler error: src/librustdoc/passes/collect_intra_doc_links.rs:369:17: no resolution for "ToPyArray::to_pyarray" MacroNS DefId(47:648 ~ numpy[8b91]::convert) [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/numpy-0.23.0/src/convert.rs:151:5 [INFO] [stdout] | [INFO] [stdout] 151 | fn to_pyarray_bound<'py>(&self, py: Python<'py>) -> Bound<'py, PyArray> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] [INFO] [stderr] thread 'rustc' (826) panicked at src/librustdoc/passes/collect_intra_doc_links.rs:369:17: [INFO] [stderr] Box [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x7597f4c5b913 - ::fmt::h3d7dac47fafb0c4b [INFO] [stderr] 1: 0x7597f520e408 - core::fmt::write::h2b50c72afd608b4f [INFO] [stderr] 2: 0x7597f6739fc2 - std::io::Write::write_fmt::hbf9db9cfd246a008 [INFO] [stderr] 3: 0x7597f4c28e75 - std::panicking::default_hook::{{closure}}::h9e8fa234fcafc036 [INFO] [stderr] 4: 0x7597f4c28ca3 - std::panicking::default_hook::hced54bbef22072d1 [INFO] [stderr] 5: 0x7597f3c1061a - std[3409abd3fb48a5f1]::panicking::update_hook::>::{closure#0} [INFO] [stderr] 6: 0x7597f4c291a2 - std::panicking::panic_with_hook::h12698ee7dd16f3b6 [INFO] [stderr] 7: 0x7597f3c4d281 - std[3409abd3fb48a5f1]::panicking::begin_panic::::{closure#0} [INFO] [stderr] 8: 0x7597f3c3d536 - std[3409abd3fb48a5f1]::sys::backtrace::__rust_end_short_backtrace::::{closure#0}, !> [INFO] [stderr] 9: 0x7597f3c3d33f - std[3409abd3fb48a5f1]::panicking::begin_panic:: [INFO] [stderr] 10: 0x7597f3c6aea1 - ::emit_producing_guarantee [INFO] [stderr] 11: 0x7597f41fd97c - ::span_bug:: [INFO] [stderr] 12: 0x7597f42204f6 - rustc_middle[d308fc93fdc35779]::util::bug::opt_span_bug_fmt::::{closure#0} [INFO] [stderr] 13: 0x7597f42206a2 - rustc_middle[d308fc93fdc35779]::ty::context::tls::with_opt::::{closure#0}, !>::{closure#0} [INFO] [stderr] 14: 0x7597f4211ccb - rustc_middle[d308fc93fdc35779]::ty::context::tls::with_context_opt::::{closure#0}, !>::{closure#0}, !> [INFO] [stderr] 15: 0x7597f221ebc8 - rustc_middle[d308fc93fdc35779]::util::bug::span_bug_fmt:: [INFO] [stderr] 16: 0x64fa3117408d - ::resolve_path [INFO] [stderr] 17: 0x64fa311747c3 - ::resolve [INFO] [stderr] 18: 0x64fa3118a232 - ::resolve_link [INFO] [stderr] 19: 0x64fa310bf859 - ::resolve_links::{closure#0} [INFO] [stderr] 20: 0x64fa312d3b15 - ::visit_item [INFO] [stderr] 21: 0x64fa311b98a8 - rustdoc[a1098cbc91ac2277]::core::run_global_ctxt [INFO] [stderr] 22: 0x64fa310aa488 - rustdoc[a1098cbc91ac2277]::main_args::{closure#2}::{closure#0} [INFO] [stderr] 23: 0x64fa310a13fd - rustc_interface[27b2fd718601f0da]::interface::run_compiler::<(), rustdoc[a1098cbc91ac2277]::main_args::{closure#2}>::{closure#1} [INFO] [stderr] 24: 0x64fa30fd9a28 - std[3409abd3fb48a5f1]::sys::backtrace::__rust_begin_short_backtrace::::{closure#1}, ()>::{closure#0}, ()>::{closure#0}::{closure#0}, ()> [INFO] [stderr] 25: 0x64fa310d40d7 - ::{closure#1}, ()>::{closure#0}, ()>::{closure#0}::{closure#0}, ()>::{closure#1} as core[fe766838cf8e359]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stderr] 26: 0x7597f6395682 - std::sys::thread::unix::Thread::new::thread_start::he30da9c17f5363d6 [INFO] [stderr] 27: 0x7597efe8aaa4 - [INFO] [stderr] 28: 0x7597eff17a64 - clone [INFO] [stderr] 29: 0x0 - [INFO] [stderr] [INFO] [stderr] note: we would appreciate a bug report: https://github.com/rust-lang/rust/issues/new?labels=C-bug%2C+I-ICE%2C+T-rustdoc&template=ice.md [INFO] [stderr] [INFO] [stderr] note: rustc 1.94.0-beta.2 (23a44d3c7 2026-01-25) running on x86_64-unknown-linux-gnu [INFO] [stderr] [INFO] [stderr] note: compiler flags: --crate-type cdylib [INFO] [stderr] [INFO] [stderr] note: some of the compiler flags provided by cargo are hidden [INFO] [stderr] [INFO] [stderr] query stack during panic: [INFO] [stderr] end of query stack [INFO] [stderr] error: could not document `corrosiff-python` [INFO] running `Command { std: "docker" "inspect" "b0ab2b620a68aba6d55918c7af598b5a9b01375b3465bf2253a023e86ba3c343", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b0ab2b620a68aba6d55918c7af598b5a9b01375b3465bf2253a023e86ba3c343", kill_on_drop: false }` [INFO] [stdout] b0ab2b620a68aba6d55918c7af598b5a9b01375b3465bf2253a023e86ba3c343