[INFO] cloning repository https://github.com/ywei1081/oxdna-trajectory-reader
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ywei1081/oxdna-trajectory-reader" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fywei1081%2Foxdna-trajectory-reader", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fywei1081%2Foxdna-trajectory-reader'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4c73edf1cce314d6f60e76e4c8820273f32da26d
[INFO] documenting ywei1081/oxdna-trajectory-reader against beta-2026-01-20 for beta-1.94-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fywei1081%2Foxdna-trajectory-reader" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ywei1081/oxdna-trajectory-reader
[INFO] finished tweaking git repo https://github.com/ywei1081/oxdna-trajectory-reader
[INFO] tweaked toml for git repo https://github.com/ywei1081/oxdna-trajectory-reader written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ywei1081/oxdna-trajectory-reader on toolchain beta-2026-01-20
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-01-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ywei1081/oxdna-trajectory-reader already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2026-01-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6a21502082e29fd627ff7a4ffd18541d8e7339f258d26552775b2270e6d90cc4
[INFO] running `Command { std: "docker" "start" "-a" "6a21502082e29fd627ff7a4ffd18541d8e7339f258d26552775b2270e6d90cc4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6a21502082e29fd627ff7a4ffd18541d8e7339f258d26552775b2270e6d90cc4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6a21502082e29fd627ff7a4ffd18541d8e7339f258d26552775b2270e6d90cc4", kill_on_drop: false }`
[INFO] [stdout] 6a21502082e29fd627ff7a4ffd18541d8e7339f258d26552775b2270e6d90cc4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2026-01-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8cf8546f7869a6918c2d6561aaeba943775f59cf55b4d38a190d9d59c1debbf4
[INFO] running `Command { std: "docker" "start" "-a" "8cf8546f7869a6918c2d6561aaeba943775f59cf55b4d38a190d9d59c1debbf4", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking rustc-hash v2.1.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling pyo3-build-config v0.23.3
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling syn v2.0.91
[INFO] [stderr]    Compiling pyo3-ffi v0.23.3
[INFO] [stderr]    Compiling pyo3-macros-backend v0.23.3
[INFO] [stderr]    Compiling pyo3 v0.23.3
[INFO] [stderr]    Compiling pyo3-macros v0.23.3
[INFO] [stderr]     Checking numpy v0.23.0
[INFO] [stderr]  Documenting oxdna_trajectory_reader v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr] 
[INFO] [stdout] error: internal compiler error: src/librustdoc/passes/collect_intra_doc_links.rs:369:17: no resolution for "ToPyArray::to_pyarray" MacroNS DefId(20:648 ~ numpy[07f4]::convert)
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/numpy-0.23.0/src/convert.rs:151:5
[INFO] [stdout]     |
[INFO] [stdout] 151 |     fn to_pyarray_bound<'py>(&self, py: Python<'py>) -> Bound<'py, PyArray<Self::Item, Self::Dim>> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] thread 'rustc' (496) panicked at src/librustdoc/passes/collect_intra_doc_links.rs:369:17:
[INFO] [stderr] Box<dyn Any>
[INFO] [stderr] stack backtrace:
[INFO] [stderr]    0:     0x7368cb45c5b3 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hb7e843cde1bc81a3
[INFO] [stderr]    1:     0x7368cba0e408 - core::fmt::write::h952c506e2dbe9cff
[INFO] [stderr]    2:     0x7368ccf4c182 - std::io::Write::write_fmt::hb496f2b9b027aa16
[INFO] [stderr]    3:     0x7368cb429b15 - std::panicking::default_hook::{{closure}}::h85cb76b8462c00f2
[INFO] [stderr]    4:     0x7368cb429943 - std::panicking::default_hook::h0134d220cc034c02
[INFO] [stderr]    5:     0x7368ca411c4a - std[a6ffc322ab77e72b]::panicking::update_hook::<alloc[dee09189312495c1]::boxed::Box<rustc_driver_impl[ae30ea3cc38f692f]::install_ice_hook::{closure#1}>>::{closure#0}
[INFO] [stderr]    6:     0x7368cb429e42 - std::panicking::panic_with_hook::h8119b6db1fef734f
[INFO] [stderr]    7:     0x7368ca44ef81 - std[a6ffc322ab77e72b]::panicking::begin_panic::<rustc_errors[376ba38486738b83]::ExplicitBug>::{closure#0}
[INFO] [stderr]    8:     0x7368ca43f4d6 - std[a6ffc322ab77e72b]::sys::backtrace::__rust_end_short_backtrace::<std[a6ffc322ab77e72b]::panicking::begin_panic<rustc_errors[376ba38486738b83]::ExplicitBug>::{closure#0}, !>
[INFO] [stderr]    9:     0x7368ca43f03f - std[a6ffc322ab77e72b]::panicking::begin_panic::<rustc_errors[376ba38486738b83]::ExplicitBug>
[INFO] [stderr]   10:     0x7368ca46ccc1 - <rustc_errors[376ba38486738b83]::diagnostic::BugAbort as rustc_errors[376ba38486738b83]::diagnostic::EmissionGuarantee>::emit_producing_guarantee
[INFO] [stderr]   11:     0x7368ca9fe73c - <rustc_errors[376ba38486738b83]::DiagCtxtHandle>::span_bug::<rustc_span[e08c9c65e8b364a4]::span_encoding::Span, alloc[dee09189312495c1]::string::String>
[INFO] [stderr]   12:     0x7368caa212b6 - rustc_middle[550e158e12b1f18e]::util::bug::opt_span_bug_fmt::<rustc_span[e08c9c65e8b364a4]::span_encoding::Span>::{closure#0}
[INFO] [stderr]   13:     0x7368caa21462 - rustc_middle[550e158e12b1f18e]::ty::context::tls::with_opt::<rustc_middle[550e158e12b1f18e]::util::bug::opt_span_bug_fmt<rustc_span[e08c9c65e8b364a4]::span_encoding::Span>::{closure#0}, !>::{closure#0}
[INFO] [stderr]   14:     0x7368caa1257b - rustc_middle[550e158e12b1f18e]::ty::context::tls::with_context_opt::<rustc_middle[550e158e12b1f18e]::ty::context::tls::with_opt<rustc_middle[550e158e12b1f18e]::util::bug::opt_span_bug_fmt<rustc_span[e08c9c65e8b364a4]::span_encoding::Span>::{closure#0}, !>::{closure#0}, !>
[INFO] [stderr]   15:     0x7368c82e9198 - rustc_middle[550e158e12b1f18e]::util::bug::span_bug_fmt::<rustc_span[e08c9c65e8b364a4]::span_encoding::Span>
[INFO] [stderr]   16:     0x62594edb330d - <rustdoc[9b9ab9058886d6f4]::passes::collect_intra_doc_links::LinkCollector>::resolve_path
[INFO] [stderr]   17:     0x62594edb3a43 - <rustdoc[9b9ab9058886d6f4]::passes::collect_intra_doc_links::LinkCollector>::resolve
[INFO] [stderr]   18:     0x62594edc94b2 - <rustdoc[9b9ab9058886d6f4]::passes::collect_intra_doc_links::LinkCollector>::resolve_link
[INFO] [stderr]   19:     0x62594ecfead9 - <rustdoc[9b9ab9058886d6f4]::passes::collect_intra_doc_links::LinkCollector>::resolve_links::{closure#0}
[INFO] [stderr]   20:     0x62594ef12d95 - <rustdoc[9b9ab9058886d6f4]::passes::collect_intra_doc_links::LinkCollector as rustdoc[9b9ab9058886d6f4]::visit::DocVisitor>::visit_item
[INFO] [stderr]   21:     0x62594edf8b28 - rustdoc[9b9ab9058886d6f4]::core::run_global_ctxt
[INFO] [stderr]   22:     0x62594ece9708 - rustdoc[9b9ab9058886d6f4]::main_args::{closure#2}::{closure#0}
[INFO] [stderr]   23:     0x62594ece120d - rustc_interface[d1d6371790822761]::interface::run_compiler::<(), rustdoc[9b9ab9058886d6f4]::main_args::{closure#2}>::{closure#1}
[INFO] [stderr]   24:     0x62594ec2b308 - std[a6ffc322ab77e72b]::sys::backtrace::__rust_begin_short_backtrace::<rustc_interface[d1d6371790822761]::util::run_in_thread_with_globals<rustc_interface[d1d6371790822761]::util::run_in_thread_pool_with_globals<rustc_interface[d1d6371790822761]::interface::run_compiler<(), rustdoc[9b9ab9058886d6f4]::main_args::{closure#2}>::{closure#1}, ()>::{closure#0}, ()>::{closure#0}::{closure#0}, ()>
[INFO] [stderr]   25:     0x62594ed1bd57 - <std[a6ffc322ab77e72b]::thread::lifecycle::spawn_unchecked<rustc_interface[d1d6371790822761]::util::run_in_thread_with_globals<rustc_interface[d1d6371790822761]::util::run_in_thread_pool_with_globals<rustc_interface[d1d6371790822761]::interface::run_compiler<(), rustdoc[9b9ab9058886d6f4]::main_args::{closure#2}>::{closure#1}, ()>::{closure#0}, ()>::{closure#0}::{closure#0}, ()>::{closure#1} as core[8f63ddeb68e21f74]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stderr]   26:     0x7368ccadb1b8 - std::sys::thread::unix::Thread::new::thread_start::h106a295241840d3b
[INFO] [stderr]   27:     0x7368c668aaa4 - <unknown>
[INFO] [stderr]   28:     0x7368c6717a64 - clone
[INFO] [stderr]   29:                0x0 - <unknown>
[INFO] [stderr] 
[INFO] [stderr] note: we would appreciate a bug report: https://github.com/rust-lang/rust/issues/new?labels=C-bug%2C+I-ICE%2C+T-rustdoc&template=ice.md
[INFO] [stderr] 
[INFO] [stderr] note: rustc 1.94.0-beta.1 (9b1f8ff42 2026-01-19) running on x86_64-unknown-linux-gnu
[INFO] [stderr] 
[INFO] [stderr] note: compiler flags: --crate-type cdylib
[INFO] [stderr] 
[INFO] [stderr] note: some of the compiler flags provided by cargo are hidden
[INFO] [stderr] 
[INFO] [stderr] query stack during panic:
[INFO] [stderr] end of query stack
[INFO] [stderr] error: could not document `oxdna_trajectory_reader`
[INFO] running `Command { std: "docker" "inspect" "8cf8546f7869a6918c2d6561aaeba943775f59cf55b4d38a190d9d59c1debbf4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8cf8546f7869a6918c2d6561aaeba943775f59cf55b4d38a190d9d59c1debbf4", kill_on_drop: false }`
[INFO] [stdout] 8cf8546f7869a6918c2d6561aaeba943775f59cf55b4d38a190d9d59c1debbf4
