[INFO] cloning repository https://github.com/mbhall88/rasusa
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mbhall88/rasusa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Frasusa", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Frasusa'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8381499d130e0f991869dc932efc9190ba5523a0
[INFO] testing mbhall88/rasusa against 1.93.0 for beta-1.94-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Frasusa" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/mbhall88/rasusa
[INFO] finished tweaking git repo https://github.com/mbhall88/rasusa
[INFO] tweaked toml for git repo https://github.com/mbhall88/rasusa written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/mbhall88/rasusa on toolchain 1.93.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.93.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/mbhall88/rasusa already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.93.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded wit-bindgen v0.45.0
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[INFO] [stderr]   Downloaded rand_pcg v0.3.1
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded buffer-redux v1.0.0
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded wasi v0.14.3+wasi-0.2.4
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[INFO] [stderr]   Downloaded float-cmp v0.10.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
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[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded regex-automata v0.4.12
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[INFO] [stderr]   Downloaded libz-sys v1.1.16
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8402a131fe7c435329cc631501811a35ab15b240dc503b699cd22c6690955705
[INFO] running `Command { std: "docker" "start" "-a" "8402a131fe7c435329cc631501811a35ab15b240dc503b699cd22c6690955705", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8402a131fe7c435329cc631501811a35ab15b240dc503b699cd22c6690955705", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8402a131fe7c435329cc631501811a35ab15b240dc503b699cd22c6690955705", kill_on_drop: false }`
[INFO] [stdout] 8402a131fe7c435329cc631501811a35ab15b240dc503b699cd22c6690955705
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d8f5b696eca7d8fe90a1b916464a41f41f57ce076f65a3f791bae97c0dbbedc5
[INFO] running `Command { std: "docker" "start" "-a" "d8f5b696eca7d8fe90a1b916464a41f41f57ce076f65a3f791bae97c0dbbedc5", kill_on_drop: false }`
[INFO] [stderr]    Compiling pkg-config v0.3.28
[INFO] [stderr]    Compiling memchr v2.7.1
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[INFO] [stderr]    Compiling getrandom v0.2.11
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[INFO] [stderr]    Compiling cmake v0.1.50
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[INFO] [stderr]    Compiling thiserror-impl v2.0.17
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[INFO] [stderr]    Compiling env_filter v0.1.0
[INFO] [stderr]    Compiling bgzip v0.2.2
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling zstd v0.12.4
[INFO] [stderr]    Compiling niffler v2.5.0
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling clap v4.5.54
[INFO] [stderr]    Compiling rasusa v2.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 40.64s
[INFO] running `Command { std: "docker" "inspect" "d8f5b696eca7d8fe90a1b916464a41f41f57ce076f65a3f791bae97c0dbbedc5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d8f5b696eca7d8fe90a1b916464a41f41f57ce076f65a3f791bae97c0dbbedc5", kill_on_drop: false }`
[INFO] [stdout] d8f5b696eca7d8fe90a1b916464a41f41f57ce076f65a3f791bae97c0dbbedc5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5955e5355cea775d7b2b6cb69b610797c2fb5b6471dab01c2413d648ffb65ce1
[INFO] running `Command { std: "docker" "start" "-a" "5955e5355cea775d7b2b6cb69b610797c2fb5b6471dab01c2413d648ffb65ce1", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.17
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling bitflags v2.4.1
[INFO] [stderr]    Compiling assert_cmd v2.0.17
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling bstr v1.9.0
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling rasusa v2.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 9.04s
[INFO] running `Command { std: "docker" "inspect" "5955e5355cea775d7b2b6cb69b610797c2fb5b6471dab01c2413d648ffb65ce1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5955e5355cea775d7b2b6cb69b610797c2fb5b6471dab01c2413d648ffb65ce1", kill_on_drop: false }`
[INFO] [stdout] 5955e5355cea775d7b2b6cb69b610797c2fb5b6471dab01c2413d648ffb65ce1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] fbb3943a1ebfefb606fa73644ad717c9af76e4b6f6beaae782fe7980160ecf4b
[INFO] running `Command { std: "docker" "start" "-a" "fbb3943a1ebfefb606fa73644ad717c9af76e4b6f6beaae782fe7980160ecf4b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rasusa-abc6b71150ae880b)
[INFO] [stdout] 
[INFO] [stdout] running 123 tests
[INFO] [stdout] test alignment::tests::test_infer_format ... ok
[INFO] [stdout] test alignment::tests::test_original_issue_random_compare_insufficient_shuffling ... ok
[INFO] [stdout] test alignment::tests::test_make_program_id_unique_one_program_occurrence ... ok
[INFO] [stdout] test alignment::tests::test_infer_format_from_char ... ok
[INFO] [stdout] test alignment::tests::test_make_program_id_unique_two_program_occurrences ... ok
[INFO] [stdout] test alignment::tests::test_shuffle_records_by_position_empty ... ok
[INFO] [stdout] test alignment::tests::test_original_issue_random_compare_vs_proper_shuffle ... ok
[INFO] [stdout] test alignment::tests::test_shuffle_records_by_position_mixed_positions ... ok
[INFO] [stdout] test alignment::tests::test_make_program_id_unique_no_programs ... ok
[INFO] [stdout] test cli::tests::base_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::compression_format_from_path ... ok
[INFO] [stdout] test cli::tests::compression_format_from_str ... ok
[INFO] [stdout] test cli::tests::empty_string_is_base_metric_suffix ... ok
[INFO] [stdout] test alignment::tests::test_make_program_id_unique_no_program ... ok
[INFO] [stdout] test alignment::tests::test_shuffle_records_by_position_maintains_sort_order ... ok
[INFO] [stdout] test cli::tests::float_coverage_returns_float ... ok
[INFO] [stdout] test cli::tests::float_ending_in_x_coverage_returns_float ... ok
[INFO] [stdout] test cli::tests::float_multiply_with_base_unit ... ok
[INFO] [stdout] test alignment::tests::test_shuffle_records_by_position_single_record ... ok
[INFO] [stdout] test alignment::tests::test_make_program_id_unique_program_id_startswith_same_substring ... ok
[INFO] [stdout] test alignment::tests::no_coverage_given_raises_error ... ok
[INFO] [stdout] test alignment::tests::zero_coverage_raises_error ... ok
[INFO] [stdout] test alignment::tests::test_original_issue_demonstrates_problem_with_random_compare ... ok
[INFO] [stdout] test alignment::tests::test_shuffle_records_by_position_shuffles_same_position ... ok
[INFO] [stdout] test cli::tests::genome_size_from_faidx ... ok
[INFO] [stdout] test cli::tests::genome_size_from_faidx_fastq_index ... ok
[INFO] [stdout] test cli::tests::int_coverage_returns_float ... ok
[INFO] [stdout] test cli::tests::int_ending_in_x_coverage_returns_float ... ok
[INFO] [stdout] test cli::tests::giga_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::invalid_suffix_raises_error ... ok
[INFO] [stdout] test cli::tests::float_and_suffix_returns_multiplied_float_as_int ... ok
[INFO] [stdout] test cli::tests::kilo_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::mega_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::empty_string_returns_error ... ok
[INFO] [stdout] test cli::tests::int_and_base_suffix_returns_int_without_scaling ... ok
[INFO] [stdout] test alignment::tests::bam_no_index_fails ... ok
[INFO] [stdout] test cli::tests::genome_size_from_str_fastq_index ... ok
[INFO] [stdout] test cli::tests::float_without_leading_int_and_suffix_returns_multiplied_float_as_int ... ok
[INFO] [stdout] test cli::tests::non_number_coverage_returns_err ... ok
[INFO] [stdout] test cli::tests::integer_only_returns_integer ... ok
[INFO] [stdout] test cli::tests::int_and_tera_suffix_returns_multiplied_int ... ok
[INFO] [stdout] test cli::tests::parse_fraction_check_lower_range ... ok
[INFO] [stdout] test cli::tests::parse_fraction_check_upper_range ... ok
[INFO] [stdout] test cli::tests::parse_fraction_over_100_fails ... ok
[INFO] [stdout] test cli::tests::parse_fraction_over_one_as_fration_converts ... ok
[INFO] [stdout] test cli::tests::parse_fraction_over_one_converts ... ok
[INFO] [stdout] test cli::tests::parse_fraction_zero_is_zero ... ok
[INFO] [stdout] test cli::tests::parse_fraction_less_one_unchanged ... ok
[INFO] [stdout] test cli::tests::parse_fraction_negative_fraction_returns_error ... ok
[INFO] [stdout] test cli::tests::tera_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::test_in_compress_range ... ok
[INFO] [stdout] test fastx::tests::create_invalid_output_file_raises_error ... ok
[INFO] [stdout] test cli::tests::zero_coverage_returns_zero ... ok
[INFO] [stdout] test cli::tests::int_and_suffix_returns_multiplied_int ... ok
[INFO] [stdout] test cli::tests::parse_fraction_non_fraction_fails ... ok
[INFO] [stdout] test cli::tests::parse_fraction_one_asf32_is_one ... ok
[INFO] [stdout] test cli::tests::parse_fraction_one_is_one ... ok
[INFO] [stdout] test fastx::tests::create_valid_output_file_and_can_write_to_it ... ok
[INFO] [stdout] test cli::tests::invalid_suffix_returns_err ... ok
[INFO] [stdout] test cli::tests::multiply_coverage_by_genome_size ... ok
[INFO] [stdout] test fastx::tests::create_valid_compressed_output_file_and_can_write_to_it ... ok
[INFO] [stdout] test fastx::tests::fastx_from_fasta ... ok
[INFO] [stdout] test fastx::tests::filter_fasta_reads_one_index_matches_only_read ... ok
[INFO] [stdout] test fastx::tests::filter_reads_empty_indices_no_output ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_matches_one_of_two_reads ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_out_of_range ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_matches_only_read ... ok
[INFO] [stdout] test fastx::tests::get_read_lengths_for_empty_fasta_returns_empty_vector ... ok
[INFO] [stdout] test fastx::tests::get_read_lengths_for_fastq ... ok
[INFO] [stdout] test fastx::tests::filter_fasta_reads_one_index_out_of_range ... ok
[INFO] [stdout] test fastx::tests::get_read_lengths_for_fasta ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_two_indices_matches_first_and_last_reads ... ok
[INFO] [stdout] test cli::tests::float_only_returns_integer ... ok
[INFO] [stdout] test reads::tests::bases_and_num_not_allowed ... ok
[INFO] [stdout] test reads::tests::invalid_genome_size_given_raises_error ... ok
[INFO] [stdout] test reads::tests::frac_and_num_not_allowed ... ok
[INFO] [stdout] test reads::tests::invalid_coverage_given_raises_error ... ok
[INFO] [stdout] test cli::tests::suffix_with_no_size_returns_error ... ok
[INFO] [stdout] test reads::tests::frac_and_coverage_and_genome_size_not_allowed ... ok
[INFO] [stdout] test reads::tests::frac_and_bases_not_allowed ... ok
[INFO] [stdout] test cli::tests::empty_coverage_returns_err ... ok
[INFO] [stdout] test cli::tests::divide_u64_by_genome_size ... ok
[INFO] [stdout] test reads::tests::no_genome_size_or_coverage_given_but_frac_given ... ok
[INFO] [stdout] test reads::tests::invalid_seed_given_raises_error ... ok
[INFO] [stdout] test reads::tests::no_coverage_given_raises_error ... ok
[INFO] [stdout] test reads::tests::no_genome_size_or_coverage_given_but_bases_given ... ok
[INFO] [stdout] test reads::tests::faidx_given_as_genome_size ... ok
[INFO] [stdout] test reads::tests::three_inputs_raises_error ... ok
[INFO] [stdout] test reads::tests::no_genome_size_but_bases_and_coverage ... ok
[INFO] [stdout] test reads::tests::no_args_given_raises_error ... ok
[INFO] [stdout] test reads::tests::num_and_coverage_and_genome_size_not_allowed ... ok
[INFO] [stdout] test reads::tests::no_genome_size_given_raises_error ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_for_empty_vector_returns_empty ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_for_vector_len_one_returns_zero ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_for_vector_len_two_does_shuffle ... ok
[INFO] [stdout] test cli::tests::multiply_genome_size_by_coverage ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_with_seed_produces_same_ordering ... ok
[INFO] [stdout] test subsampler::tests::subsample_empty_lengths_returns_empty ... ok
[INFO] [stdout] test subsampler::tests::subsample_more_reads_than_available_takes_all ... ok
[INFO] [stdout] test subsampler::tests::subsample_num_reads_less_than_available_takes_subset ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_length_greater_than_target_returns_zero ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_length_less_than_target_returns_zero ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_length_target_zero_returns_empty ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_read_target_zero_returns_empty ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_all_greater_than_target_returns_two ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_equal_target_returns_three ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_greater_than_target_returns_two ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_less_than_target_returns_three ... ok
[INFO] [stdout] test subsampler::tests::subsample_num_reads_and_available_equal_takes_all ... ok
[INFO] [stdout] test reads::tests::one_input_no_output_is_ok ... ok
[INFO] [stdout] test reads::tests::all_valid_args_parsed_as_expected ... ok
[INFO] [stdout] test reads::tests::no_genome_size_or_coverage_given_but_num_given ... ok
[INFO] [stdout] test reads::tests::bases_and_coverage_and_genome_size_all_allowed ... ok
[INFO] [stdout] test reads::tests::one_input_two_outputs_raises_error ... ok
[INFO] [stdout] test reads::tests::no_input_file_given_raises_error ... ok
[INFO] [stdout] test reads::tests::two_inputs_one_output_raises_error ... ok
[INFO] [stdout] test reads::tests::two_outputs_passed_with_one_option_flag ... ok
[INFO] [stdout] test reads::tests::three_outputs_raises_error ... ok
[INFO] [stdout] test reads::tests::two_input_two_outputs_is_ok ... FAILED
[INFO] [stdout] test reads::tests::two_input_two_outputs_is_ok_when_positional_args_at_end ... FAILED
[INFO] [stdout] test alignment::tests::bam_with_regions_of_zero_coverage_doesnt_endless_loop ... ok
[INFO] [stdout] test alignment::tests::excess_coverage_doesnt_endless_loop ... ok
[INFO] [stdout] test alignment::tests::bam_with_no_start_or_end_regions_and_missing_chromosomes ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- reads::tests::two_input_two_outputs_is_ok stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'reads::tests::two_input_two_outputs_is_ok' (212) panicked at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5:
[INFO] [stdout] Unexpected failure.
[INFO] [stdout] code=1
[INFO] [stdout] stderr=``````
[INFO] [stdout] [2026-01-27T16:47:11Z INFO ] Two input files given. Assuming paired Illumina...
[INFO] [stdout] Error: unable to create the first output file
[INFO] [stdout] 
[INFO] [stdout] Caused by:
[INFO] [stdout]     0: Output file could not be created
[INFO] [stdout]     1: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <E as anyhow::context::ext::StdError>::ext_context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/backtrace.rs:27:14
[INFO] [stdout]    1: anyhow::context::<impl anyhow::Context<T,E> for core::result::Result<T,E>>::context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/context.rs:54:37
[INFO] [stdout]    2: <rasusa::reads::Reads as rasusa::Runner>::run
[INFO] [stdout]              at ./src/reads.rs:170:22
[INFO] [stdout]    3: rasusa::main
[INFO] [stdout]              at ./src/main.rs:48:12
[INFO] [stdout]    4: core::ops::function::FnOnce::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]    5: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:160:18
[INFO] [stdout]    6: std::rt::lang_start::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:206:18
[INFO] [stdout]    7: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:287:21
[INFO] [stdout]    8: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]    9: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   10: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   11: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:175:24
[INFO] [stdout]   12: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   13: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   14: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   15: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:171:5
[INFO] [stdout]   16: std::rt::lang_start
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:205:5
[INFO] [stdout]   17: main
[INFO] [stdout]   18: <unknown>
[INFO] [stdout]   19: __libc_start_main
[INFO] [stdout]   20: _start
[INFO] [stdout] ```
[INFO] [stdout] ```
[INFO] [stdout] command=`"/opt/rustwide/target/debug/rasusa" "reads" "tests/cases/r1.fq.gz" "tests/cases/r1.fq.gz" "-c" "5" "-g" "8mb" "-s" "88" "-o" "out.fq" "-o" "out.fq"`
[INFO] [stdout] code=1
[INFO] [stdout] stdout=""
[INFO] [stdout] stderr=```
[INFO] [stdout] [2026-01-27T16:47:11Z INFO ] Two input files given. Assuming paired Illumina...
[INFO] [stdout] Error: unable to create the first output file
[INFO] [stdout] 
[INFO] [stdout] Caused by:
[INFO] [stdout]     0: Output file could not be created
[INFO] [stdout]     1: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <E as anyhow::context::ext::StdError>::ext_context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/backtrace.rs:27:14
[INFO] [stdout]    1: anyhow::context::<impl anyhow::Context<T,E> for core::result::Result<T,E>>::context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/context.rs:54:37
[INFO] [stdout]    2: <rasusa::reads::Reads as rasusa::Runner>::run
[INFO] [stdout]              at ./src/reads.rs:170:22
[INFO] [stdout]    3: rasusa::main
[INFO] [stdout]              at ./src/main.rs:48:12
[INFO] [stdout]    4: core::ops::function::FnOnce::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]    5: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:160:18
[INFO] [stdout]    6: std::rt::lang_start::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:206:18
[INFO] [stdout]    7: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:287:21
[INFO] [stdout]    8: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]    9: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   10: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   11: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:175:24
[INFO] [stdout]   12: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   13: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   14: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   15: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:171:5
[INFO] [stdout]   16: std::rt::lang_start
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:205:5
[INFO] [stdout]   17: main
[INFO] [stdout]   18: <unknown>
[INFO] [stdout]   19: __libc_start_main
[INFO] [stdout]   20: _start
[INFO] [stdout] ```
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x594d3e169ae2 - std::backtrace_rs::backtrace::libunwind::trace::h90e89fac33585832
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x594d3e169ae2 - std::backtrace_rs::backtrace::trace_unsynchronized::heebcf2380a8e7359
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x594d3e169ae2 - std::sys::backtrace::_print_fmt::hdf3e2a22d2f810db
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:68:9
[INFO] [stdout]    3:     0x594d3e169ae2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hac1d885928ba8582
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:38:26
[INFO] [stdout]    4:     0x594d3e17c577 - core::fmt::rt::Argument::fmt::h6901eb7c19abebe8
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x594d3e17c577 - core::fmt::write::h83ebb4d32483be9e
[INFO] [stdout]    6:     0x594d3e1351a6 - std::io::default_write_fmt::h751a79cdae495f10
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x594d3e1351a6 - std::io::Write::write_fmt::h9ef514f8700ff7b2
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x594d3e146e99 - std::sys::backtrace::BacktraceLock::print::hcc2e1a3ac996c911
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:41:9
[INFO] [stdout]    9:     0x594d3e146e99 - std::panicking::default_hook::{{closure}}::h8e9c4d1276f0925f
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x594d3e146d31 - std::panicking::default_hook::h2b2078d38b534dfb
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x594d3db8c45e - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h39d051e7dedac6a7
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x594d3db8c45e - test::test_main_with_exit_callback::{{closure}}::h4b005fe75814c302
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x594d3e147112 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hd426070722c13cbf
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x594d3e147112 - std::panicking::panic_with_hook::h39b739724e701bfd
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x594d3e146f58 - std::panicking::panic_handler::{{closure}}::he540c4833054e458
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x594d3e141429 - std::sys::backtrace::__rust_end_short_backtrace::hfa179d89deec8aed
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:176:18
[INFO] [stdout]   17:     0x594d3e1297ad - __rustc[d131491b17107b07]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x594d3e186b4c - core::panicking::panic_fmt::ha564519d657d9c46
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x594d3ddf86b8 - core::panicking::panic_display::hd7c56973884e71d1
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panicking.rs:259:5
[INFO] [stdout]   20:     0x594d3ddf4317 - assert_cmd::assert::AssertError::panic::hfc5ac10b40c38b6d
[INFO] [stdout]                                at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-2.0.17/src/assert.rs:1033:9
[INFO] [stdout]   21:     0x594d3ddfad57 - core::ops::function::FnOnce::call_once::habe75a8441edb6ef
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   22:     0x594d3ddeca94 - core::result::Result<T,E>::unwrap_or_else::hcc5b7f9233220116
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/result.rs:1622:23
[INFO] [stdout]   23:     0x594d3ddf4b40 - assert_cmd::assert::Assert::success::h7bf676a3dd5b3bea
[INFO] [stdout]                                at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-2.0.17/src/assert.rs:158:28
[INFO] [stdout]   24:     0x594d3db517e9 - rasusa::reads::tests::two_input_two_outputs_is_ok::h4931a76bf30effb4
[INFO] [stdout]                                at /opt/rustwide/workdir/src/reads.rs:626:40
[INFO] [stdout]   25:     0x594d3db51857 - rasusa::reads::tests::two_input_two_outputs_is_ok::{{closure}}::h5ac00bad5fef3a95
[INFO] [stdout]                                at /opt/rustwide/workdir/src/reads.rs:619:37
[INFO] [stdout]   26:     0x594d3db5def6 - core::ops::function::FnOnce::call_once::h151125b48883a502
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   27:     0x594d3db8c28b - core::ops::function::FnOnce::call_once::h0217b30cfdee2e67
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   28:     0x594d3db8c28b - test::__rust_begin_short_backtrace::h6d98714a1e28f556
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:663:18
[INFO] [stdout]   29:     0x594d3db9fc1a - test::run_test_in_process::{{closure}}::he2c70d2634d3a3cc
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:686:74
[INFO] [stdout]   30:     0x594d3db9fc1a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h40a0a825bcf17fdd
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   31:     0x594d3db9fc1a - std::panicking::catch_unwind::do_call::h6c8eb5dd6e7b5975
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   32:     0x594d3db9fc1a - std::panicking::catch_unwind::h55455eac2972ad1e
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   33:     0x594d3db9fc1a - std::panic::catch_unwind::h0025465150a5e558
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   34:     0x594d3db9fc1a - test::run_test_in_process::hb61e682f9b630fbc
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:686:27
[INFO] [stdout]   35:     0x594d3db9fc1a - test::run_test::{{closure}}::hc2c2a7a38ab176e2
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:607:43
[INFO] [stdout]   36:     0x594d3db79eb4 - test::run_test::{{closure}}::ha91867b85cd2a911
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:637:41
[INFO] [stdout]   37:     0x594d3db79eb4 - std::sys::backtrace::__rust_begin_short_backtrace::ha00a9fe02049c339
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:160:18
[INFO] [stdout]   38:     0x594d3db7d7e2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::{{closure}}::hd629fba9153dfb55
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/thread/lifecycle.rs:92:13
[INFO] [stdout]   39:     0x594d3db7d7e2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4189018816a5c5d9
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   40:     0x594d3db7d7e2 - std::panicking::catch_unwind::do_call::hf9fcdbca3c2e9877
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   41:     0x594d3db7d7e2 - std::panicking::catch_unwind::h97b92d88631c7c64
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   42:     0x594d3db7d7e2 - std::panic::catch_unwind::ha77cdbb68e725e5e
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   43:     0x594d3db7d7e2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::h511f05bc1a132253
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/thread/lifecycle.rs:90:26
[INFO] [stdout]   44:     0x594d3db7d7e2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h6b68b31e9b685cb8
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   45:     0x594d3e13c98f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h22a27d165e4e871d
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   46:     0x594d3e13c98f - std::sys::thread::unix::Thread::new::thread_start::h45cc87bb053add0f
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/thread/unix.rs:118:17
[INFO] [stdout]   47:     0x7bc5b3b50aa4 - <unknown>
[INFO] [stdout]   48:     0x7bc5b3bdda64 - clone
[INFO] [stdout]   49:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- reads::tests::two_input_two_outputs_is_ok_when_positional_args_at_end stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'reads::tests::two_input_two_outputs_is_ok_when_positional_args_at_end' (217) panicked at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5:
[INFO] [stdout] Unexpected failure.
[INFO] [stdout] code=1
[INFO] [stdout] stderr=``````
[INFO] [stdout] [2026-01-27T16:47:11Z INFO ] Two input files given. Assuming paired Illumina...
[INFO] [stdout] Error: unable to create the first output file
[INFO] [stdout] 
[INFO] [stdout] Caused by:
[INFO] [stdout]     0: Output file could not be created
[INFO] [stdout]     1: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <E as anyhow::context::ext::StdError>::ext_context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/backtrace.rs:27:14
[INFO] [stdout]    1: anyhow::context::<impl anyhow::Context<T,E> for core::result::Result<T,E>>::context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/context.rs:54:37
[INFO] [stdout]    2: <rasusa::reads::Reads as rasusa::Runner>::run
[INFO] [stdout]              at ./src/reads.rs:170:22
[INFO] [stdout]    3: rasusa::main
[INFO] [stdout]              at ./src/main.rs:48:12
[INFO] [stdout]    4: core::ops::function::FnOnce::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]    5: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:160:18
[INFO] [stdout]    6: std::rt::lang_start::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:206:18
[INFO] [stdout]    7: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:287:21
[INFO] [stdout]    8: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]    9: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   10: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   11: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:175:24
[INFO] [stdout]   12: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   13: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   14: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   15: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:171:5
[INFO] [stdout]   16: std::rt::lang_start
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:205:5
[INFO] [stdout]   17: main
[INFO] [stdout]   18: <unknown>
[INFO] [stdout]   19: __libc_start_main
[INFO] [stdout]   20: _start
[INFO] [stdout] ```
[INFO] [stdout] ```
[INFO] [stdout] command=`"/opt/rustwide/target/debug/rasusa" "reads" "-c" "5" "-g" "8mb" "-s" "88" "-o" "out.fq" "-o" "out.fq" "tests/cases/r1.fq.gz" "tests/cases/r1.fq.gz"`
[INFO] [stdout] code=1
[INFO] [stdout] stdout=""
[INFO] [stdout] stderr=```
[INFO] [stdout] [2026-01-27T16:47:11Z INFO ] Two input files given. Assuming paired Illumina...
[INFO] [stdout] Error: unable to create the first output file
[INFO] [stdout] 
[INFO] [stdout] Caused by:
[INFO] [stdout]     0: Output file could not be created
[INFO] [stdout]     1: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <E as anyhow::context::ext::StdError>::ext_context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/backtrace.rs:27:14
[INFO] [stdout]    1: anyhow::context::<impl anyhow::Context<T,E> for core::result::Result<T,E>>::context
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.100/src/context.rs:54:37
[INFO] [stdout]    2: <rasusa::reads::Reads as rasusa::Runner>::run
[INFO] [stdout]              at ./src/reads.rs:170:22
[INFO] [stdout]    3: rasusa::main
[INFO] [stdout]              at ./src/main.rs:48:12
[INFO] [stdout]    4: core::ops::function::FnOnce::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]    5: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:160:18
[INFO] [stdout]    6: std::rt::lang_start::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:206:18
[INFO] [stdout]    7: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:287:21
[INFO] [stdout]    8: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]    9: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   10: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   11: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:175:24
[INFO] [stdout]   12: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   13: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   14: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   15: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:171:5
[INFO] [stdout]   16: std::rt::lang_start
[INFO] [stdout]              at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/rt.rs:205:5
[INFO] [stdout]   17: main
[INFO] [stdout]   18: <unknown>
[INFO] [stdout]   19: __libc_start_main
[INFO] [stdout]   20: _start
[INFO] [stdout] ```
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x594d3e169ae2 - std::backtrace_rs::backtrace::libunwind::trace::h90e89fac33585832
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x594d3e169ae2 - std::backtrace_rs::backtrace::trace_unsynchronized::heebcf2380a8e7359
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x594d3e169ae2 - std::sys::backtrace::_print_fmt::hdf3e2a22d2f810db
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:68:9
[INFO] [stdout]    3:     0x594d3e169ae2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hac1d885928ba8582
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:38:26
[INFO] [stdout]    4:     0x594d3e17c577 - core::fmt::rt::Argument::fmt::h6901eb7c19abebe8
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x594d3e17c577 - core::fmt::write::h83ebb4d32483be9e
[INFO] [stdout]    6:     0x594d3e1351a6 - std::io::default_write_fmt::h751a79cdae495f10
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x594d3e1351a6 - std::io::Write::write_fmt::h9ef514f8700ff7b2
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x594d3e146e99 - std::sys::backtrace::BacktraceLock::print::hcc2e1a3ac996c911
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:41:9
[INFO] [stdout]    9:     0x594d3e146e99 - std::panicking::default_hook::{{closure}}::h8e9c4d1276f0925f
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x594d3e146d31 - std::panicking::default_hook::h2b2078d38b534dfb
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x594d3db8c45e - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h39d051e7dedac6a7
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x594d3db8c45e - test::test_main_with_exit_callback::{{closure}}::h4b005fe75814c302
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x594d3e147112 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hd426070722c13cbf
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x594d3e147112 - std::panicking::panic_with_hook::h39b739724e701bfd
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x594d3e146f58 - std::panicking::panic_handler::{{closure}}::he540c4833054e458
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x594d3e141429 - std::sys::backtrace::__rust_end_short_backtrace::hfa179d89deec8aed
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:176:18
[INFO] [stdout]   17:     0x594d3e1297ad - __rustc[d131491b17107b07]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x594d3e186b4c - core::panicking::panic_fmt::ha564519d657d9c46
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x594d3ddf86b8 - core::panicking::panic_display::hd7c56973884e71d1
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panicking.rs:259:5
[INFO] [stdout]   20:     0x594d3ddf4317 - assert_cmd::assert::AssertError::panic::hfc5ac10b40c38b6d
[INFO] [stdout]                                at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-2.0.17/src/assert.rs:1033:9
[INFO] [stdout]   21:     0x594d3ddfad57 - core::ops::function::FnOnce::call_once::habe75a8441edb6ef
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   22:     0x594d3ddeca94 - core::result::Result<T,E>::unwrap_or_else::hcc5b7f9233220116
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/result.rs:1622:23
[INFO] [stdout]   23:     0x594d3ddf4b40 - assert_cmd::assert::Assert::success::h7bf676a3dd5b3bea
[INFO] [stdout]                                at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-2.0.17/src/assert.rs:158:28
[INFO] [stdout]   24:     0x594d3db556f9 - rasusa::reads::tests::two_input_two_outputs_is_ok_when_positional_args_at_end::h863f24469daf0948
[INFO] [stdout]                                at /opt/rustwide/workdir/src/reads.rs:637:40
[INFO] [stdout]   25:     0x594d3db55767 - rasusa::reads::tests::two_input_two_outputs_is_ok_when_positional_args_at_end::{{closure}}::h839737466149f3c4
[INFO] [stdout]                                at /opt/rustwide/workdir/src/reads.rs:630:65
[INFO] [stdout]   26:     0x594d3db5dbf6 - core::ops::function::FnOnce::call_once::h008fe10c9c349929
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   27:     0x594d3db8c28b - core::ops::function::FnOnce::call_once::h0217b30cfdee2e67
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   28:     0x594d3db8c28b - test::__rust_begin_short_backtrace::h6d98714a1e28f556
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:663:18
[INFO] [stdout]   29:     0x594d3db9fc1a - test::run_test_in_process::{{closure}}::he2c70d2634d3a3cc
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:686:74
[INFO] [stdout]   30:     0x594d3db9fc1a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h40a0a825bcf17fdd
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   31:     0x594d3db9fc1a - std::panicking::catch_unwind::do_call::h6c8eb5dd6e7b5975
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   32:     0x594d3db9fc1a - std::panicking::catch_unwind::h55455eac2972ad1e
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   33:     0x594d3db9fc1a - std::panic::catch_unwind::h0025465150a5e558
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   34:     0x594d3db9fc1a - test::run_test_in_process::hb61e682f9b630fbc
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:686:27
[INFO] [stdout]   35:     0x594d3db9fc1a - test::run_test::{{closure}}::hc2c2a7a38ab176e2
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:607:43
[INFO] [stdout]   36:     0x594d3db79eb4 - test::run_test::{{closure}}::ha91867b85cd2a911
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/test/src/lib.rs:637:41
[INFO] [stdout]   37:     0x594d3db79eb4 - std::sys::backtrace::__rust_begin_short_backtrace::ha00a9fe02049c339
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/backtrace.rs:160:18
[INFO] [stdout]   38:     0x594d3db7d7e2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::{{closure}}::hd629fba9153dfb55
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/thread/lifecycle.rs:92:13
[INFO] [stdout]   39:     0x594d3db7d7e2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4189018816a5c5d9
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   40:     0x594d3db7d7e2 - std::panicking::catch_unwind::do_call::hf9fcdbca3c2e9877
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:581:40
[INFO] [stdout]   41:     0x594d3db7d7e2 - std::panicking::catch_unwind::h97b92d88631c7c64
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panicking.rs:544:19
[INFO] [stdout]   42:     0x594d3db7d7e2 - std::panic::catch_unwind::ha77cdbb68e725e5e
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/panic.rs:359:14
[INFO] [stdout]   43:     0x594d3db7d7e2 - std::thread::lifecycle::spawn_unchecked::{{closure}}::h511f05bc1a132253
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/thread/lifecycle.rs:90:26
[INFO] [stdout]   44:     0x594d3db7d7e2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h6b68b31e9b685cb8
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   45:     0x594d3e13c98f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h22a27d165e4e871d
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   46:     0x594d3e13c98f - std::sys::thread::unix::Thread::new::thread_start::h45cc87bb053add0f
[INFO] [stdout]                                at /rustc/254b59607d4417e9dffbc307138ae5c86280fe4c/library/std/src/sys/thread/unix.rs:118:17
[INFO] [stdout]   47:     0x7bc5b3b50aa4 - <unknown>
[INFO] [stdout]   48:     0x7bc5b3bdda64 - clone
[INFO] [stdout]   49:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     reads::tests::two_input_two_outputs_is_ok
[INFO] [stdout]     reads::tests::two_input_two_outputs_is_ok_when_positional_args_at_end
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 121 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 23.31s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--bin rasusa`
[INFO] running `Command { std: "docker" "inspect" "fbb3943a1ebfefb606fa73644ad717c9af76e4b6f6beaae782fe7980160ecf4b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fbb3943a1ebfefb606fa73644ad717c9af76e4b6f6beaae782fe7980160ecf4b", kill_on_drop: false }`
[INFO] [stdout] fbb3943a1ebfefb606fa73644ad717c9af76e4b6f6beaae782fe7980160ecf4b
