[INFO] fetching crate alignoth 1.4.3...
[INFO] testing alignoth-1.4.3 against 1.93.0 for beta-1.94-1
[INFO] extracting crate alignoth 1.4.3 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate alignoth 1.4.3
[INFO] finished tweaking crates.io crate alignoth 1.4.3
[INFO] tweaked toml for crates.io crate alignoth 1.4.3 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate alignoth 1.4.3 on toolchain 1.93.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.93.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate alignoth 1.4.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.93.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded structopt-derive v0.4.18
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2c55809d2ce8643c4775068078c75c8571ec4d35191f7b55a3c5262deac370d1
[INFO] running `Command { std: "docker" "start" "-a" "2c55809d2ce8643c4775068078c75c8571ec4d35191f7b55a3c5262deac370d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2c55809d2ce8643c4775068078c75c8571ec4d35191f7b55a3c5262deac370d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2c55809d2ce8643c4775068078c75c8571ec4d35191f7b55a3c5262deac370d1", kill_on_drop: false }`
[INFO] [stdout] 2c55809d2ce8643c4775068078c75c8571ec4d35191f7b55a3c5262deac370d1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] bf3a4d3b44190e809b7db46ccbc83837213f564468a9fc73092643bece19b809
[INFO] running `Command { std: "docker" "start" "-a" "bf3a4d3b44190e809b7db46ccbc83837213f564468a9fc73092643bece19b809", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
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[INFO] [stderr]    Compiling bio-types v1.0.4
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[INFO] [stderr]    Compiling tokio v1.49.0
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[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling icu_properties v1.5.1
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[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling alignoth v1.4.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 57s
[INFO] running `Command { std: "docker" "inspect" "bf3a4d3b44190e809b7db46ccbc83837213f564468a9fc73092643bece19b809", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bf3a4d3b44190e809b7db46ccbc83837213f564468a9fc73092643bece19b809", kill_on_drop: false }`
[INFO] [stdout] bf3a4d3b44190e809b7db46ccbc83837213f564468a9fc73092643bece19b809
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3df954dbc9deeb31e23b5d5e55eda9e1c35fef8c2074f29282b60b1542cbfb30
[INFO] running `Command { std: "docker" "start" "-a" "3df954dbc9deeb31e23b5d5e55eda9e1c35fef8c2074f29282b60b1542cbfb30", kill_on_drop: false }`
[INFO] [stderr]    Compiling alignoth v1.4.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.10s
[INFO] running `Command { std: "docker" "inspect" "3df954dbc9deeb31e23b5d5e55eda9e1c35fef8c2074f29282b60b1542cbfb30", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3df954dbc9deeb31e23b5d5e55eda9e1c35fef8c2074f29282b60b1542cbfb30", kill_on_drop: false }`
[INFO] [stdout] 3df954dbc9deeb31e23b5d5e55eda9e1c35fef8c2074f29282b60b1542cbfb30
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+1.93.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9506eaa31beff284563e95eec25aa8d99dc4eea7525f240eb492764277ad3d03
[INFO] running `Command { std: "docker" "start" "-a" "9506eaa31beff284563e95eec25aa8d99dc4eea7525f240eb492764277ad3d03", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.47s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignoth-a70cf5b7aeadf855)
[INFO] [stdout] 
[INFO] [stdout] running 32 tests
[INFO] [stdout] test cli::tests::test_interval_deserialization ... ok
[INFO] [stdout] test cli::tests::test_region_from_around ... ok
[INFO] [stdout] test cli::tests::test_data_format_deserialization ... ok
[INFO] [stdout] test cli::tests::test_region_length ... ok
[INFO] [stdout] test cli::tests::test_data_format_to_string ... ok
[INFO] [stdout] test plot::tests::test_coverage_from_reads_basic_overlap ... ok
[INFO] [stdout] test plot::tests::test_aux_record ... ok
[INFO] [stdout] test plot::tests::test_aux_record_to_string ... ok
[INFO] [stdout] test plot::tests::test_filter_mismatches ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_deletion ... ok
[INFO] [stdout] test plot::tests::test_empty_aux_record ... ok
[INFO] [stdout] test plot::tests::test_read_ordering ... ok
[INFO] [stdout] test highlight::tests::test_vcf_interval_out_of_bounds ... ok
[INFO] [stdout] test highlight::tests::test_vcf_intervals ... ok
[INFO] [stdout] test plot::tests::test_read_ordering_with_max_read_depth ... ok
[INFO] [stdout] test highlight::tests::test_bed_intervals ... ok
[INFO] [stdout] test tests::test_write_files ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_from_str ... ok
[INFO] [stdout] test utils::tests::test_ellipsis ... ok
[INFO] [stdout] test utils::tests::test_get_ref_and_bam_from_empty_cwd ... ok
[INFO] [stdout] test cli::tests::test_around_deserialization ... ok
[INFO] [stdout] test cli::tests::test_region_deserialization ... ok
[INFO] [stdout] test plot::tests::test_matching_bases ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_insertion ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_match ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_string_serialization ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_contigs ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_length ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data ... ok
[INFO] [stdout] test plot::tests::test_fetch_reference ... ok
[INFO] [stdout] test plot::tests::test_read_position_with_softclips ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data_2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 32 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.22s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "9506eaa31beff284563e95eec25aa8d99dc4eea7525f240eb492764277ad3d03", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9506eaa31beff284563e95eec25aa8d99dc4eea7525f240eb492764277ad3d03", kill_on_drop: false }`
[INFO] [stdout] 9506eaa31beff284563e95eec25aa8d99dc4eea7525f240eb492764277ad3d03
