[INFO] cloning repository https://github.com/BramDevlaminck/CCB_PairwiseAlignment
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/BramDevlaminck/CCB_PairwiseAlignment" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBramDevlaminck%2FCCB_PairwiseAlignment", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBramDevlaminck%2FCCB_PairwiseAlignment'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 420dc9e9f6c63df9967c3bbe8fc1d58217606c54
[INFO] documenting BramDevlaminck/CCB_PairwiseAlignment against 1.91.0 for beta-1.92-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBramDevlaminck%2FCCB_PairwiseAlignment" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/BramDevlaminck/CCB_PairwiseAlignment
[INFO] finished tweaking git repo https://github.com/BramDevlaminck/CCB_PairwiseAlignment
[INFO] tweaked toml for git repo https://github.com/BramDevlaminck/CCB_PairwiseAlignment written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/BramDevlaminck/CCB_PairwiseAlignment on toolchain 1.91.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/BramDevlaminck/CCB_PairwiseAlignment already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-4-tc1/source/bitpal/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded anstream v0.6.12
[INFO] [stderr]   Downloaded rand_core v0.9.0-alpha.0
[INFO] [stderr]   Downloaded rand_chacha v0.9.0-alpha.0
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.0-alpha.5
[INFO] [stderr]   Downloaded rand v0.9.0-alpha.0
[INFO] [stderr]   Downloaded zerocopy v0.8.0-alpha.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 604da4e418ce1c0800367f2f139f24d7f7ce91f75be2b31101a32e44e9453e95
[INFO] running `Command { std: "docker" "start" "-a" "604da4e418ce1c0800367f2f139f24d7f7ce91f75be2b31101a32e44e9453e95", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "604da4e418ce1c0800367f2f139f24d7f7ce91f75be2b31101a32e44e9453e95", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "604da4e418ce1c0800367f2f139f24d7f7ce91f75be2b31101a32e44e9453e95", kill_on_drop: false }`
[INFO] [stdout] 604da4e418ce1c0800367f2f139f24d7f7ce91f75be2b31101a32e44e9453e95
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e70f54dac53c158d3c9c043958492309027def79d3da31041c9216c9c9d14db3
[INFO] running `Command { std: "docker" "start" "-a" "e70f54dac53c158d3c9c043958492309027def79d3da31041c9216c9c9d14db3", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bitpal/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking strsim v0.11.0
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling zerocopy v0.8.0-alpha.5
[INFO] [stderr]     Checking fasta_reader v0.1.0 (/opt/rustwide/workdir/fasta_reader)
[INFO] [stderr]  Documenting fasta_reader v0.1.0 (/opt/rustwide/workdir/fasta_reader)
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]    Compiling syn v2.0.50
[INFO] [stderr]     Checking anstream v0.6.12
[INFO] [stderr]     Checking clap_builder v4.5.1
[INFO] [stderr]     Checking getrandom v0.2.12
[INFO] [stderr]     Checking rand_core v0.9.0-alpha.0
[INFO] [stderr]     Checking rand_chacha v0.9.0-alpha.0
[INFO] [stderr]     Checking rand v0.9.0-alpha.0
[INFO] [stderr]    Compiling clap_derive v4.5.0
[INFO] [stderr]     Checking clap v4.5.1
[INFO] [stderr]     Checking needleman_wunsch v0.1.0 (/opt/rustwide/workdir/needleman_wunsch)
[INFO] [stderr]  Documenting banded_global_alignment v0.1.0 (/opt/rustwide/workdir/banded_global_alignment)
[INFO] [stderr]  Documenting needleman_wunsch v0.1.0 (/opt/rustwide/workdir/needleman_wunsch)
[INFO] [stderr]  Documenting bitpal v0.1.0 (/opt/rustwide/workdir/bitpal)
[INFO] [stderr]  Documenting hirschberg v0.1.0 (/opt/rustwide/workdir/hirschberg)
[INFO] [stderr]  Documenting needleman_wunsch_delta_encoded v0.1.0 (/opt/rustwide/workdir/needleman_wunsch_delta_encoded)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.84s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/banded_global_alignment/index.html and 5 other files
[INFO] running `Command { std: "docker" "inspect" "e70f54dac53c158d3c9c043958492309027def79d3da31041c9216c9c9d14db3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e70f54dac53c158d3c9c043958492309027def79d3da31041c9216c9c9d14db3", kill_on_drop: false }`
[INFO] [stdout] e70f54dac53c158d3c9c043958492309027def79d3da31041c9216c9c9d14db3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 410b0b5cc6b5486e728814d366989643800b64811b0864b43718b510138fd8e5
[INFO] running `Command { std: "docker" "start" "-a" "410b0b5cc6b5486e728814d366989643800b64811b0864b43718b510138fd8e5", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bitpal/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] error: manifest path `/opt/rustwide/workdir/Cargo.toml` is a virtual manifest, but this command requires running against an actual package in this workspace
[INFO] running `Command { std: "docker" "inspect" "410b0b5cc6b5486e728814d366989643800b64811b0864b43718b510138fd8e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "410b0b5cc6b5486e728814d366989643800b64811b0864b43718b510138fd8e5", kill_on_drop: false }`
[INFO] [stdout] 410b0b5cc6b5486e728814d366989643800b64811b0864b43718b510138fd8e5
