[INFO] cloning repository https://github.com/Adoni5/minimap2-sys
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/minimap2-sys" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fminimap2-sys", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fminimap2-sys'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 46d54d8b80c20aeb4368ca36133cb2443fb09a75
[INFO] documenting Adoni5/minimap2-sys against beta-2025-10-28 for beta-1.92-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fminimap2-sys" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Adoni5/minimap2-sys
[INFO] finished tweaking git repo https://github.com/Adoni5/minimap2-sys
[INFO] tweaked toml for git repo https://github.com/Adoni5/minimap2-sys written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Adoni5/minimap2-sys on toolchain beta-2025-10-28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Adoni5/minimap2-sys already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7501822c46aaef38b75242f57cfc88d31c8824fae3ecc0282bce1f9dfc7e364b
[INFO] running `Command { std: "docker" "start" "-a" "7501822c46aaef38b75242f57cfc88d31c8824fae3ecc0282bce1f9dfc7e364b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7501822c46aaef38b75242f57cfc88d31c8824fae3ecc0282bce1f9dfc7e364b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7501822c46aaef38b75242f57cfc88d31c8824fae3ecc0282bce1f9dfc7e364b", kill_on_drop: false }`
[INFO] [stdout] 7501822c46aaef38b75242f57cfc88d31c8824fae3ecc0282bce1f9dfc7e364b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] aca4ba45c3d72d74e44acd3e0cabef4a513707ff227a5d47c4ea082498b395a6
[INFO] running `Command { std: "docker" "start" "-a" "aca4ba45c3d72d74e44acd3e0cabef4a513707ff227a5d47c4ea082498b395a6", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.134
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.46
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling unicode-ident v1.0.4
[INFO] [stderr]    Compiling syn v1.0.104
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling libloading v0.7.3
[INFO] [stderr]    Compiling either v1.8.0
[INFO] [stderr]    Compiling bindgen v0.63.0
[INFO] [stderr]    Compiling regex-syntax v0.6.27
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling clang-sys v1.4.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling which v4.3.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.6.0
[INFO] [stderr]    Compiling minimap2-sys v0.1.7 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `minimap2-sys v0.1.7 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/minimap2-sys-fe26866b64ee0bdc/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   "/opt/rustwide/target/debug/build/minimap2-sys-cb7f5151fb100f3c/out"
[INFO] [stderr]   cargo:rerun-if-changed=minimap2/*.c
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rustc-link-lib=m
[INFO] [stderr]   cargo:rustc-link-lib=pthread
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=SYSROOT
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rustc-link-search=native=/usr/lib/x86_64-linux-gnu
[INFO] [stderr]   cargo:rustc-link-lib=z
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=ZLIB_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (472) panicked at build.rs:59:5:
[INFO] [stderr]   No files found in minimap2 directory -- Did you forget to clone the submodule? git submodule init --recursive
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x6261b8add5d2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x6261b8add5d2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x6261b8add5d2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x6261b8add5d2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h47627beda0767f4c
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x6261b8aee8ef - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x6261b8aee8ef - core::fmt::write::h8a63064c67176fd8
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25
[INFO] [stderr]      6:     0x6261b8aab933 - std::io::default_write_fmt::hc257f38f86d39af6
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x6261b8aab933 - std::io::Write::write_fmt::h5e9b646cef91150b
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x6261b8ab7452 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x6261b8abab5f - std::panicking::default_hook::{{closure}}::h23e0299d4738b766
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x6261b8aba9b9 - std::panicking::default_hook::hfeec6294e8751b62
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x6261b8abb1e5 - std::panicking::panic_with_hook::hd57cd463d793ed79
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x6261b8abaf96 - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:700:13
[INFO] [stderr]     13:     0x6261b8ab7589 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x6261b8a9fa7d - __rustc[256c90bb7e548b45]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x6261b8af87d0 - core::panicking::panic_fmt::hf19c198748ef6a95
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x6261b8600330 - build_script_build::gen::hadd88fca2549efd1
[INFO] [stderr]     17:     0x6261b8600da6 - build_script_build::main::hb80f3df8f45eaac6
[INFO] [stderr]     18:     0x6261b8601913 - core::ops::function::FnOnce::call_once::h81e8645e0a25c348
[INFO] [stderr]     19:     0x6261b8601846 - std::sys::backtrace::__rust_begin_short_backtrace::haf2e32fe601c8a7a
[INFO] [stderr]     20:     0x6261b86017c9 - std::rt::lang_start::{{closure}}::h0fb8f570a9a94b02
[INFO] [stderr]     21:     0x6261b8aad480 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hdf957eac011d0136
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     22:     0x6261b8aad480 - std::panicking::catch_unwind::do_call::h9ff550f7799115e1
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40
[INFO] [stderr]     23:     0x6261b8aad480 - std::panicking::catch_unwind::ha7ce46787bb12905
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19
[INFO] [stderr]     24:     0x6261b8aad480 - std::panic::catch_unwind::h625b36596def7d39
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14
[INFO] [stderr]     25:     0x6261b8aad480 - std::rt::lang_start_internal::{{closure}}::h4cbc9430de699e2c
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:175:24
[INFO] [stderr]     26:     0x6261b8aad480 - std::panicking::catch_unwind::do_call::h5af2f11409a22e3e
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40
[INFO] [stderr]     27:     0x6261b8aad480 - std::panicking::catch_unwind::hf64cf7b0d8070f52
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19
[INFO] [stderr]     28:     0x6261b8aad480 - std::panic::catch_unwind::h480b74763390cdcf
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14
[INFO] [stderr]     29:     0x6261b8aad480 - std::rt::lang_start_internal::h4b3d04f698aef094
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:171:5
[INFO] [stderr]     30:     0x6261b86017b1 - std::rt::lang_start::h716aab3d45b939d3
[INFO] [stderr]     31:     0x6261b8603065 - main
[INFO] [stderr]     32:     0x7580b35131ca - <unknown>
[INFO] [stderr]     33:     0x7580b351328b - __libc_start_main
[INFO] [stderr]     34:     0x6261b85ff3e5 - _start
[INFO] [stderr]     35:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "aca4ba45c3d72d74e44acd3e0cabef4a513707ff227a5d47c4ea082498b395a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aca4ba45c3d72d74e44acd3e0cabef4a513707ff227a5d47c4ea082498b395a6", kill_on_drop: false }`
[INFO] [stdout] aca4ba45c3d72d74e44acd3e0cabef4a513707ff227a5d47c4ea082498b395a6
