[INFO] cloning repository https://github.com/ARU-life-sciences/rep
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/rep" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Frep", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Frep'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a255dbf0604222168843648aeb378f8aeca1e713
[INFO] documenting ARU-life-sciences/rep against 1.91.0 for beta-1.92-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Frep" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/rep
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/rep
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/rep written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/rep on toolchain 1.91.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/rep already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded tempfile v3.11.0
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[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded bio v1.5.0
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 149685350eae439d5a602525efb88eb4dd6534b623792630c67e401cb02b7b06
[INFO] running `Command { std: "docker" "start" "-a" "149685350eae439d5a602525efb88eb4dd6534b623792630c67e401cb02b7b06", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "149685350eae439d5a602525efb88eb4dd6534b623792630c67e401cb02b7b06", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "149685350eae439d5a602525efb88eb4dd6534b623792630c67e401cb02b7b06", kill_on_drop: false }`
[INFO] [stdout] 149685350eae439d5a602525efb88eb4dd6534b623792630c67e401cb02b7b06
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3b65686b5dc940e086f8894c0a62385ac85855114fbc0416810265114ad1d766
[INFO] running `Command { std: "docker" "start" "-a" "3b65686b5dc940e086f8894c0a62385ac85855114fbc0416810265114ad1d766", kill_on_drop: false }`
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking bytemuck v1.15.0
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking regex-syntax v0.8.2
[INFO] [stderr]     Checking getrandom v0.2.12
[INFO] [stderr]    Compiling anyhow v1.0.81
[INFO] [stderr]     Checking indexmap v2.2.5
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling syn v2.0.53
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking wide v0.7.15
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking num-rational v0.4.1
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking clap v4.5.2
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
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[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.58
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking serde v1.0.197
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.5.0
[INFO] [stderr]  Documenting rep v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 35.11s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/rep/index.html
[INFO] running `Command { std: "docker" "inspect" "3b65686b5dc940e086f8894c0a62385ac85855114fbc0416810265114ad1d766", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3b65686b5dc940e086f8894c0a62385ac85855114fbc0416810265114ad1d766", kill_on_drop: false }`
[INFO] [stdout] 3b65686b5dc940e086f8894c0a62385ac85855114fbc0416810265114ad1d766
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ab3381ff1973617cd725f7788b1a0ce58e40a980fe8bcfb2b5edef5db53787de
[INFO] running `Command { std: "docker" "start" "-a" "ab3381ff1973617cd725f7788b1a0ce58e40a980fe8bcfb2b5edef5db53787de", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling anyhow v1.0.81
[INFO] [stdout] error[E0412]: cannot find type `SourceFile` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.79/src/wrapper.rs:364:26
[INFO] [stdout]     |
[INFO] [stdout] 364 |     Compiler(proc_macro::SourceFile),
[INFO] [stdout]     |                          ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these structs
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::fallback::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `SourceFile`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 364 -     Compiler(proc_macro::SourceFile),
[INFO] [stdout] 364 +     Compiler(SourceFile),
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `SourceFile` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.79/src/wrapper.rs:370:32
[INFO] [stdout]     |
[INFO] [stdout] 370 |     fn nightly(sf: proc_macro::SourceFile) -> Self {
[INFO] [stdout]     |                                ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing one of these structs
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout]   1 + use crate::fallback::SourceFile;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `SourceFile`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 370 -     fn nightly(sf: proc_macro::SourceFile) -> Self {
[INFO] [stdout] 370 +     fn nightly(sf: SourceFile) -> Self {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `source_file` found for reference `&proc_macro::Span` in the current scope
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.79/src/wrapper.rs:460:56
[INFO] [stdout]     |
[INFO] [stdout] 460 |             Span::Compiler(s) => SourceFile::nightly(s.source_file()),
[INFO] [stdout]     |                                                        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: there is a method `source` with a similar name
[INFO] [stdout]     |
[INFO] [stdout] 460 -             Span::Compiler(s) => SourceFile::nightly(s.source_file()),
[INFO] [stdout] 460 +             Span::Compiler(s) => SourceFile::nightly(s.source()),
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0412, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0412`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `proc-macro2` (lib) due to 3 previous errors
[INFO] running `Command { std: "docker" "inspect" "ab3381ff1973617cd725f7788b1a0ce58e40a980fe8bcfb2b5edef5db53787de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ab3381ff1973617cd725f7788b1a0ce58e40a980fe8bcfb2b5edef5db53787de", kill_on_drop: false }`
[INFO] [stdout] ab3381ff1973617cd725f7788b1a0ce58e40a980fe8bcfb2b5edef5db53787de
