[INFO] cloning repository https://github.com/8051Enthusiast/biodiff
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/8051Enthusiast/biodiff" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7df6377aa2d260e7bb754f51f0c2f9bc601fc768
[INFO] documenting 8051Enthusiast/biodiff against 1.91.0 for beta-1.92-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/8051Enthusiast/biodiff
[INFO] finished tweaking git repo https://github.com/8051Enthusiast/biodiff
[INFO] tweaked toml for git repo https://github.com/8051Enthusiast/biodiff written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/8051Enthusiast/biodiff on toolchain 1.91.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/8051Enthusiast/biodiff already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro2 v1.0.79
[INFO] [stderr]   Downloaded winapi-util v0.1.6
[INFO] [stderr]   Downloaded trycmd v0.15.1
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[INFO] [stderr]   Downloaded serde_derive v1.0.197
[INFO] [stderr]   Downloaded anstyle-parse v0.2.3
[INFO] [stderr]   Downloaded normalize-line-endings v0.3.0
[INFO] [stderr]   Downloaded anstyle v1.0.6
[INFO] [stderr]   Downloaded tempfile v3.10.1
[INFO] [stderr]   Downloaded content_inspector v0.2.4
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.2
[INFO] [stderr]   Downloaded deranged v0.3.11
[INFO] [stderr]   Downloaded powerfmt v0.2.0
[INFO] [stderr]   Downloaded rustfft v6.2.0
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded cursive_core v0.3.7
[INFO] [stderr]   Downloaded cc v1.0.92
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded wide v0.7.15
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[INFO] [stderr]   Downloaded zerocopy v0.7.32
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded crossterm v0.25.0
[INFO] [stderr]   Downloaded cursive v0.20.0
[INFO] [stderr]   Downloaded time v0.3.35
[INFO] [stderr]   Downloaded serde_json v1.0.115
[INFO] [stderr]   Downloaded rustix v0.38.32
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded libm v0.2.8
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded editdistancek v1.0.2
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[INFO] [stderr]   Downloaded num v0.4.1
[INFO] [stderr]   Downloaded xi-unicode v0.3.0
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded bit-vec v0.6.3
[INFO] [stderr]   Downloaded bit-set v0.5.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded fixedbitset v0.4.2
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded paste v1.0.14
[INFO] [stderr]   Downloaded rustversion v1.0.15
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded crossterm_winapi v0.9.1
[INFO] [stderr]   Downloaded signal-hook-mio v0.2.3
[INFO] [stderr]   Downloaded signal-hook v0.3.17
[INFO] [stderr]   Downloaded zerocopy-derive v0.7.32
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded num-iter v0.1.44
[INFO] [stderr]   Downloaded owning_ref v0.4.1
[INFO] [stderr]   Downloaded time-core v0.1.2
[INFO] [stderr]   Downloaded cursive_buffered_backend v0.6.1
[INFO] [stderr]   Downloaded getrandom v0.2.14
[INFO] [stderr]   Downloaded autocfg v1.2.0
[INFO] [stderr]   Downloaded transpose v0.2.3
[INFO] [stderr]   Downloaded realfft v3.3.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded num_threads v0.1.7
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] [stderr]   Downloaded num-conv v0.1.0
[INFO] [stderr]   Downloaded time-macros v0.2.18
[INFO] [stderr]   Downloaded dirs v5.0.1
[INFO] [stderr]   Downloaded num-complex v0.4.5
[INFO] [stderr]   Downloaded primal-check v0.3.3
[INFO] [stderr]   Downloaded strength_reduce v0.2.4
[INFO] [stderr]   Downloaded humantime-serde v1.1.1
[INFO] [stderr]   Downloaded ryu v1.0.17
[INFO] [stderr]   Downloaded either v1.10.0
[INFO] [stderr]   Downloaded dunce v1.0.4
[INFO] [stderr]   Downloaded similar v2.5.0
[INFO] [stderr]   Downloaded enumset_derive v0.8.1
[INFO] [stderr]   Downloaded thiserror-impl v1.0.58
[INFO] [stderr]   Downloaded num-traits v0.2.18
[INFO] [stderr]   Downloaded enumset v1.1.3
[INFO] [stderr]   Downloaded thiserror v1.0.58
[INFO] [stderr]   Downloaded snapbox-macros v0.3.8
[INFO] [stderr]   Downloaded fastrand v2.0.2
[INFO] [stderr]   Downloaded os_pipe v1.1.5
[INFO] [stderr]   Downloaded anstyle-query v1.0.2
[INFO] [stderr]   Downloaded anstream v0.6.13
[INFO] [stderr]   Downloaded wait-timeout v0.2.0
[INFO] [stderr]   Downloaded syn v2.0.58
[INFO] [stderr]   Downloaded serde v1.0.197
[INFO] [stderr]   Downloaded winnow v0.6.6
[INFO] [stderr]   Downloaded unicode-width v0.1.11
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f08f61918ff29d20d3fb1260b1718383afe2071983c446eae8be7f811862b11f
[INFO] running `Command { std: "docker" "start" "-a" "f08f61918ff29d20d3fb1260b1718383afe2071983c446eae8be7f811862b11f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f08f61918ff29d20d3fb1260b1718383afe2071983c446eae8be7f811862b11f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f08f61918ff29d20d3fb1260b1718383afe2071983c446eae8be7f811862b11f", kill_on_drop: false }`
[INFO] [stdout] f08f61918ff29d20d3fb1260b1718383afe2071983c446eae8be7f811862b11f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] eaa5b87946e4a5b773f965edd8503f1cb9abbed76c344310594319fbdedce584
[INFO] running `Command { std: "docker" "start" "-a" "eaa5b87946e4a5b773f965edd8503f1cb9abbed76c344310594319fbdedce584", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking bytemuck v1.15.0
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]     Checking ppv-lite86 v0.2.17
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking regex-syntax v0.8.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking getrandom v0.2.14
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking wide v0.7.15
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]     Checking powerfmt v0.2.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling signal-hook v0.3.17
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking num-iter v0.1.44
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking signal-hook-registry v1.4.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking zerocopy v0.7.32
[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking once_cell v1.19.0
[INFO] [stderr]     Checking ryu v1.0.17
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking num-conv v0.1.0
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking time v0.3.35
[INFO] [stderr]     Checking owning_ref v0.4.1
[INFO] [stderr]    Compiling biodiff-wfa2-sys v2.3.5 (/opt/rustwide/workdir/biodiff-wfa2-sys)
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking num v0.4.1
[INFO] [stderr]     Checking mio v0.8.11
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking regex v1.10.4
[INFO] [stderr]    Compiling rustfft v6.2.0
[INFO] [stderr]     Checking strength_reduce v0.2.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling darling_core v0.20.8
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking unicode-segmentation v1.11.0
[INFO] [stderr]     Checking xi-unicode v0.3.0
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking unicode-width v0.1.11
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking transpose v0.2.3
[INFO] [stderr]     Checking signal-hook-mio v0.2.3
[INFO] [stderr]     Checking parking_lot v0.12.1
[INFO] [stderr] error: failed to run custom build command for `biodiff-wfa2-sys v2.3.5 (/opt/rustwide/workdir/biodiff-wfa2-sys)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/biodiff-wfa2-sys-76e3a0a60182d777/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stderr
[INFO] [stderr]   The WFA2 submodule is not present. Please run `git submodule update --init` to fetch it.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "eaa5b87946e4a5b773f965edd8503f1cb9abbed76c344310594319fbdedce584", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eaa5b87946e4a5b773f965edd8503f1cb9abbed76c344310594319fbdedce584", kill_on_drop: false }`
[INFO] [stdout] eaa5b87946e4a5b773f965edd8503f1cb9abbed76c344310594319fbdedce584
