[INFO] cloning repository https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fserverless-aws-rust-multi-fail-native-crate", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fserverless-aws-rust-multi-fail-native-crate'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 30c5598a2e25406a664e23f1100fbd81a29ee6f5 [INFO] documenting brainstorm/serverless-aws-rust-multi-fail-native-crate against beta-2025-10-28 for beta-1.92-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fserverless-aws-rust-multi-fail-native-crate" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate [INFO] finished tweaking git repo https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate [INFO] tweaked toml for git repo https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate on toolchain beta-2025-10-28 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/brainstorm/serverless-aws-rust-multi-fail-native-crate already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded lambda_runtime_core v0.1.2 [INFO] [stderr] Downloaded lambda_runtime_errors v0.1.1 [INFO] [stderr] Downloaded lambda_runtime_client v0.2.2 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded serde v1.0.94 [INFO] [stderr] Downloaded serde_derive v1.0.94 [INFO] [stderr] Downloaded bindgen v0.51.1 [INFO] [stderr] Downloaded tokio v0.1.22 [INFO] [stderr] Downloaded doc-comment v0.3.1 [INFO] [stderr] Downloaded backtrace-sys v0.1.30 [INFO] [stderr] Downloaded lambda_http v0.1.1 [INFO] [stderr] Downloaded lambda_runtime v0.2.1 [INFO] [stderr] Downloaded log v0.4.7 [INFO] [stderr] Downloaded arrayvec v0.4.11 [INFO] [stderr] Downloaded which v3.1.0 [INFO] [stderr] Downloaded fs-utils v1.1.1 [INFO] [stderr] Downloaded backtrace v0.3.32 [INFO] [stderr] Downloaded string v0.2.1 [INFO] [stderr] Downloaded regex v1.3.3 [INFO] [stderr] Downloaded syn v0.15.39 [INFO] [stderr] Downloaded snafu-derive v0.5.0 [INFO] [stderr] Downloaded snafu v0.5.0 [INFO] [stderr] Downloaded want v0.2.0 [INFO] [stderr] Downloaded h2 v0.1.25 [INFO] [stderr] Downloaded lzma-sys v0.1.15 [INFO] [stderr] Downloaded hyper v0.12.32 [INFO] [stderr] Downloaded tokio-threadpool v0.1.15 [INFO] [stderr] Downloaded vcpkg v0.2.8 [INFO] [stderr] Downloaded futures v0.1.28 [INFO] [stderr] Downloaded tokio-executor v0.1.8 [INFO] [stderr] Downloaded lambda_runtime_errors_derive v0.1.1 [INFO] [stderr] Downloaded rust-htslib v0.26.1 [INFO] [stderr] Downloaded cexpr v0.3.6 [INFO] [stderr] Downloaded libz-sys v1.0.25 [INFO] [stderr] Downloaded clang-sys v0.28.1 [INFO] [stderr] Downloaded regex-syntax v0.6.13 [INFO] [stderr] Downloaded bzip2-sys v0.1.7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f6e9824f640c33893bdd539b5f295283a320e2f6e3a7dfd63fe982dc4dc71ba2 [INFO] running `Command { std: "docker" "start" "-a" "f6e9824f640c33893bdd539b5f295283a320e2f6e3a7dfd63fe982dc4dc71ba2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f6e9824f640c33893bdd539b5f295283a320e2f6e3a7dfd63fe982dc4dc71ba2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6e9824f640c33893bdd539b5f295283a320e2f6e3a7dfd63fe982dc4dc71ba2", kill_on_drop: false }` [INFO] [stdout] f6e9824f640c33893bdd539b5f295283a320e2f6e3a7dfd63fe982dc4dc71ba2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 89f04fa688a5683c18137d0cac503cb5c4ea5dd5a32fd0417513b2e8fe33cdb3 [INFO] running `Command { std: "docker" "start" "-a" "89f04fa688a5683c18137d0cac503cb5c4ea5dd5a32fd0417513b2e8fe33cdb3", kill_on_drop: false }` [INFO] [stderr] Checking cfg-if v0.1.9 [INFO] [stderr] Compiling autocfg v0.1.4 [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Checking rand_core v0.4.0 [INFO] [stderr] Checking futures v0.1.28 [INFO] [stderr] Checking either v1.5.2 [INFO] [stderr] Checking smallvec v0.6.10 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Checking scopeguard v0.3.3 [INFO] [stderr] Checking iovec v0.1.2 [INFO] [stderr] Checking num_cpus v1.10.1 [INFO] [stderr] Checking stable_deref_trait v1.1.1 [INFO] [stderr] Compiling parking_lot_core v0.4.0 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Checking crossbeam-utils v0.6.5 [INFO] [stderr] Checking owning_ref v0.4.0 [INFO] [stderr] Checking net2 v0.2.33 [INFO] [stderr] Checking nodrop v0.1.13 [INFO] [stderr] Checking bytes v0.4.12 [INFO] [stderr] Compiling serde v1.0.94 [INFO] [stderr] Checking itoa v0.4.4 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking mio v0.6.19 [INFO] [stderr] Checking memoffset v0.2.1 [INFO] [stderr] Checking rustc-demangle v0.1.15 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Checking crossbeam-queue v0.1.2 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Compiling failure_derive v0.1.5 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling memchr v2.3.0 [INFO] [stderr] Checking crossbeam-epoch v0.7.1 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Compiling hyper v0.12.32 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Checking indexmap v1.0.2 [INFO] [stderr] Checking crossbeam-deque v0.7.1 [INFO] [stderr] Checking http v0.1.17 [INFO] [stderr] Checking string v0.2.1 [INFO] [stderr] Checking tokio-executor v0.1.8 [INFO] [stderr] Checking tokio-io v0.1.12 [INFO] [stderr] Checking tokio-sync v0.1.6 [INFO] [stderr] Checking mio-uds v0.6.7 [INFO] [stderr] Checking tokio-buf v0.1.1 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Checking tokio-current-thread v0.1.6 [INFO] [stderr] Checking tokio-timer v0.2.11 [INFO] [stderr] Compiling backtrace-sys v0.1.30 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking futures-cpupool v0.1.8 [INFO] [stderr] Checking want v0.2.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Checking tokio-codec v0.1.1 [INFO] [stderr] Checking tokio-threadpool v0.1.15 [INFO] [stderr] Compiling proc-macro2 v1.0.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling lambda_runtime_core v0.1.2 [INFO] [stderr] Compiling regex-syntax v0.6.13 [INFO] [stderr] Checking parking_lot v0.7.1 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Checking chrono v0.4.7 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking tokio-reactor v0.1.9 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Checking tokio-fs v0.1.6 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Checking tokio-uds v0.2.5 [INFO] [stderr] Checking tokio-udp v0.1.3 [INFO] [stderr] Checking tokio-tcp v0.1.3 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Checking backtrace v0.3.32 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Checking tokio v0.1.22 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling cexpr v0.3.6 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking h2 v0.1.25 [INFO] [stderr] Checking http-body v0.1.0 [INFO] [stderr] Checking dtoa v0.4.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking base64 v0.10.1 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking serde_json v1.0.40 [INFO] [stderr] Compiling regex v1.3.3 [INFO] [stderr] Checking serde_urlencoded v0.5.5 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling synstructure v0.10.2 [INFO] [stderr] Compiling serde_derive v1.0.94 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling lambda_runtime_errors_derive v0.1.1 [INFO] [stderr] Checking failure v0.1.5 [INFO] [stderr] Checking lambda_runtime_errors v0.1.1 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Checking lambda_runtime_client v0.2.2 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking lambda_runtime v0.2.1 [INFO] [stderr] Compiling rust-htslib v0.26.1 [INFO] [stderr] Checking lambda_http v0.1.1 [INFO] [stderr] Documenting hello v0.1.0 (/opt/rustwide/workdir/hello) [INFO] [stderr] Documenting world v0.1.0 (/opt/rustwide/workdir/world) [INFO] [stderr] error: failed to run custom build command for `rust-htslib v0.26.1` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-htslib-bf06803194879f58/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#define HAVE_LIBBZ2 1' >> config.h [INFO] [stderr] echo '#define HAVE_LIBLZMA 1' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#define HAVE_FSEEKO 1' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION "1.9"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/files.o cram/files.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/sam_header.o cram/sam_header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o [INFO] [stderr] ranlib libhts.a [INFO] [stderr] running: "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/opt/rustwide/target/debug/build/bzip2-sys-e42f4ab6919bb134/out/include" "-o" "/opt/rustwide/target/debug/build/rust-htslib-402a59fee9058461/out/wrapper.o" "-c" "wrapper.c" [INFO] [stderr] exit status: 0 [INFO] [stderr] AR_x86_64-unknown-linux-gnu = None [INFO] [stderr] AR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_AR = None [INFO] [stderr] AR = None [INFO] [stderr] running: "ar" "crs" "/opt/rustwide/target/debug/build/rust-htslib-402a59fee9058461/out/libwrapper.a" "/opt/rustwide/target/debug/build/rust-htslib-402a59fee9058461/out/wrapper.o" [INFO] [stderr] exit status: 0 [INFO] [stderr] cargo:rustc-link-lib=static=wrapper [INFO] [stderr] cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/rust-htslib-402a59fee9058461/out [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hts.c: In function 'hts_idx_init': [INFO] [stderr] hts.c:1386:59: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int' changes value from 'idx->z.last_bin = 4294967295' to '-1' [-Woverflow] [INFO] [stderr] 1386 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; [INFO] [stderr] | ^~~ [INFO] [stderr] [INFO] [stderr] thread 'main' (2263) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.8/src/fallback.rs:618:9: [INFO] [stderr] "htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5)" is not a valid Ident [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5af1c42a2012 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5af1c42a2012 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5af1c42a2012 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5af1c42a2012 - ::fmt::h47627beda0767f4c [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5af1c42b320f - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5af1c42b320f - core::fmt::write::h8a63064c67176fd8 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stderr] 6: 0x5af1c426fd33 - std::io::default_write_fmt::hc257f38f86d39af6 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5af1c426fd33 - std::io::Write::write_fmt::h5e9b646cef91150b [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5af1c427bfb2 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5af1c427f61f - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5af1c427f479 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5af1c427fbf5 - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5af1c427fa8a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x5af1c427c0e9 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5af1c426403d - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5af1c42bd360 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x5af1c417268f - proc_macro2::fallback::validate_ident::h482c785b285a53f2 [INFO] [stderr] 17: 0x5af1c4174e11 - proc_macro2::fallback::Ident::_new::h854fe4c5b50e6759 [INFO] [stderr] 18: 0x5af1c4174dcf - proc_macro2::fallback::Ident::new::hb88ad092daeb677d [INFO] [stderr] 19: 0x5af1c416ac18 - proc_macro2::Ident::new::h72577eeea46ee3b0 [INFO] [stderr] 20: 0x5af1c3fb5b75 - bindgen::ir::context::BindgenContext::rust_ident_raw::h2b218e3e8195a20f [INFO] [stderr] 21: 0x5af1c3fb3b60 - bindgen::ir::context::BindgenContext::rust_ident::h0e10195603a97f0f [INFO] [stderr] 22: 0x5af1c3f3e4ba - ::codegen::h5a14663cb11a34f2 [INFO] [stderr] 23: 0x5af1c3fd55ff - ::codegen::hd59e10b7f7e4468a [INFO] [stderr] 24: 0x5af1c4025759 - ::codegen::h81255fbf760f33d8 [INFO] [stderr] 25: 0x5af1c3f461a1 - ::codegen::h5a14663cb11a34f2 [INFO] [stderr] 26: 0x5af1c3fd55ff - ::codegen::hd59e10b7f7e4468a [INFO] [stderr] 27: 0x5af1c4025759 - ::codegen::h81255fbf760f33d8 [INFO] [stderr] 28: 0x5af1c403da15 - ::codegen::{{closure}}::h009f06f568267025 [INFO] [stderr] 29: 0x5af1c3fda591 - ::codegen::h929bc1445f09446d [INFO] [stderr] 30: 0x5af1c4025734 - ::codegen::h81255fbf760f33d8 [INFO] [stderr] 31: 0x5af1c4049e7c - bindgen::codegen::codegen::{{closure}}::h410acb607c54aba6 [INFO] [stderr] 32: 0x5af1c3fc0a38 - bindgen::ir::context::BindgenContext::gen::h1b320903032e300d [INFO] [stderr] 33: 0x5af1c404970d - bindgen::codegen::codegen::h698ed86a1843c582 [INFO] [stderr] 34: 0x5af1c405e116 - bindgen::Bindings::generate::h06164b7214408764 [INFO] [stderr] 35: 0x5af1c405b275 - bindgen::Builder::generate::he705f361c7cf5128 [INFO] [stderr] 36: 0x5af1c3ee0621 - build_script_build::main::hfe6df0d6d3f0ab42 [INFO] [stderr] 37: 0x5af1c3ee1f83 - core::ops::function::FnOnce::call_once::hd71ce4e5d3131d60 [INFO] [stderr] 38: 0x5af1c3ee1c66 - std::sys::backtrace::__rust_begin_short_backtrace::h2df36690f6a588bb [INFO] [stderr] 39: 0x5af1c3ee1bc9 - std::rt::lang_start::{{closure}}::hb9a6628f2dfa5764 [INFO] [stderr] 40: 0x5af1c4271880 - core::ops::function::impls:: for &F>::call_once::hdf957eac011d0136 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 41: 0x5af1c4271880 - std::panicking::catch_unwind::do_call::h9ff550f7799115e1 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stderr] 42: 0x5af1c4271880 - std::panicking::catch_unwind::ha7ce46787bb12905 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stderr] 43: 0x5af1c4271880 - std::panic::catch_unwind::h625b36596def7d39 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stderr] 44: 0x5af1c4271880 - std::rt::lang_start_internal::{{closure}}::h4cbc9430de699e2c [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:175:24 [INFO] [stderr] 45: 0x5af1c4271880 - std::panicking::catch_unwind::do_call::h5af2f11409a22e3e [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stderr] 46: 0x5af1c4271880 - std::panicking::catch_unwind::hf64cf7b0d8070f52 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stderr] 47: 0x5af1c4271880 - std::panic::catch_unwind::h480b74763390cdcf [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stderr] 48: 0x5af1c4271880 - std::rt::lang_start_internal::h4b3d04f698aef094 [INFO] [stderr] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:171:5 [INFO] [stderr] 49: 0x5af1c3ee1bb1 - std::rt::lang_start::hc38496b22a185efd [INFO] [stderr] 50: 0x5af1c3ee4085 - main [INFO] [stderr] 51: 0x7627f58dd1ca - [INFO] [stderr] 52: 0x7627f58dd28b - __libc_start_main [INFO] [stderr] 53: 0x5af1c3edeff5 - _start [INFO] [stderr] 54: 0x0 - [INFO] running `Command { std: "docker" "inspect" "89f04fa688a5683c18137d0cac503cb5c4ea5dd5a32fd0417513b2e8fe33cdb3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "89f04fa688a5683c18137d0cac503cb5c4ea5dd5a32fd0417513b2e8fe33cdb3", kill_on_drop: false }` [INFO] [stdout] 89f04fa688a5683c18137d0cac503cb5c4ea5dd5a32fd0417513b2e8fe33cdb3